Wall clock time and date at job start Mon Mar 30 2020 01:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 119.99775 * 2 1 4 4 C 1.50699 * 109.46500 * 90.00381 * 3 2 1 5 5 H 1.07998 * 120.00966 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99889 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00501 * 180.02562 * 6 4 3 8 8 Si 1.86804 * 119.99759 * 359.97438 * 6 4 3 9 9 H 1.48494 * 109.47224 * 90.00525 * 8 6 4 10 10 H 1.48504 * 109.46822 * 210.00180 * 8 6 4 11 11 H 1.48501 * 109.47350 * 329.99802 * 8 6 4 12 12 C 1.34775 * 120.00520 * 180.02562 * 2 1 3 13 13 O 1.21626 * 120.00529 * 180.44462 * 12 2 1 14 14 C 1.47163 * 119.99547 * 0.43997 * 12 2 1 15 15 C 1.38403 * 126.88609 * 342.14689 * 14 12 2 16 16 C 1.39676 * 105.35994 * 180.02562 * 15 14 12 17 17 N 1.30869 * 107.86328 * 0.02562 * 16 15 14 18 18 N 1.28447 * 110.92130 * 359.71062 * 17 16 15 19 19 C 1.46498 * 125.18893 * 180.27903 * 18 17 16 20 20 C 1.54273 * 110.03046 * 52.84886 * 19 18 17 21 21 C 1.54963 * 104.16248 * 217.13592 * 20 19 18 22 22 C 1.54895 * 102.77705 * 37.88578 * 21 20 19 23 23 C 1.53875 * 110.03616 * 295.63685 * 19 18 17 24 24 H 1.09003 * 109.47452 * 263.36517 * 1 2 3 25 25 H 1.09003 * 109.47391 * 143.37502 * 1 2 3 26 26 H 1.08995 * 109.47563 * 23.36868 * 1 2 3 27 27 H 1.08997 * 109.47398 * 209.99812 * 3 2 1 28 28 H 1.09000 * 109.47278 * 330.00711 * 3 2 1 29 29 H 0.96994 * 120.00644 * 179.97438 * 7 6 4 30 30 H 1.08002 * 127.32414 * 0.02562 * 15 14 12 31 31 H 1.08004 * 126.06905 * 180.02562 * 16 15 14 32 32 H 1.08997 * 110.02090 * 174.23955 * 19 18 17 33 33 H 1.08995 * 110.48486 * 335.78679 * 20 19 18 34 34 H 1.09002 * 110.48414 * 98.42869 * 20 19 18 35 35 H 1.08998 * 110.72161 * 279.57733 * 21 20 19 36 36 H 1.09001 * 110.76796 * 156.22181 * 21 20 19 37 37 H 1.08997 * 110.48756 * 203.40352 * 22 21 20 38 38 H 1.09004 * 110.59524 * 80.81839 * 22 21 20 39 39 H 1.09002 * 110.03100 * 238.56889 * 23 19 18 40 40 H 1.09003 * 110.02559 * 359.94571 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 1.4209 5 1 2.0981 1.0957 2.2418 6 6 3.1259 2.8779 1.6729 7 7 3.3455 3.2573 2.9129 8 14 3.7327 3.9293 0.2531 9 1 2.6809 4.9075 -0.1233 10 1 4.9603 4.6564 0.6651 11 1 4.0397 3.0598 -0.9109 12 6 2.1389 -1.1671 -0.0005 13 8 3.3552 -1.1671 0.0077 14 6 1.4032 -2.4416 -0.0109 15 6 0.0731 -2.6356 0.3188 16 6 -0.1529 -4.0042 0.1549 17 7 0.9684 -4.5518 -0.2396 18 7 1.8950 -3.6694 -0.3522 19 6 3.2705 -3.9393 -0.7780 20 6 3.2684 -4.7061 -2.1166 21 6 4.4507 -5.6994 -1.9865 22 6 4.3712 -6.1339 -0.5018 23 6 3.9716 -4.8465 0.2482 24 1 -0.3634 -0.1187 1.0208 25 1 -0.3634 -0.8248 -0.6131 26 1 -0.3634 0.9433 -0.4076 27 1 3.1498 1.1386 -0.5138 28 1 1.6083 2.0285 -0.5137 29 1 3.8223 4.0831 3.0902 30 1 -0.6389 -1.8878 0.6356 31 1 -1.0872 -4.5192 0.3237 32 1 3.8185 -3.0032 -0.8848 33 1 2.3300 -5.2452 -2.2460 34 1 3.4341 -4.0216 -2.9486 35 1 5.3978 -5.2008 -2.1927 36 1 4.3113 -6.5549 -2.6473 37 1 5.3412 -6.4913 -0.1564 38 1 3.6120 -6.9046 -0.3680 39 1 4.8604 -4.3509 0.6389 40 1 3.2887 -5.0851 1.0636 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332445942.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:23 Heat of formation + Delta-G solvation = 52.847482 kcal Electronic energy + Delta-G solvation = -22007.161527 eV Core-core repulsion = 18824.127575 eV Total energy + Delta-G solvation = -3183.033952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.41433 -38.82951 -37.97900 -35.19234 -32.73381 -32.10763 -30.86491 -28.89313 -28.22956 -27.67600 -26.27072 -23.47244 -22.09083 -21.62292 -20.82362 -20.03738 -18.66905 -17.06323 -16.94269 -16.05491 -15.96247 -15.48304 -15.20079 -14.61586 -14.46876 -14.00789 -13.79213 -13.49061 -13.46171 -12.78748 -12.46926 -12.36901 -12.02901 -11.77667 -11.73666 -11.51301 -11.28724 -11.27298 -11.00362 -10.96267 -10.71388 -10.60205 -10.32566 -10.17519 -9.59999 -9.30128 -8.95734 -8.72829 -8.62737 -7.82797 -6.11997 -4.11596 1.63351 2.57136 2.82073 3.24126 3.32517 3.35712 3.65693 3.74556 4.33197 4.36058 4.42476 4.76728 4.83267 4.89374 5.20483 5.24252 5.28790 5.35449 5.38820 5.45266 5.49818 5.56876 5.67760 5.73137 5.74680 5.86913 5.89406 5.94562 6.04792 6.10514 6.15865 6.18978 6.56268 6.70080 6.86988 6.98862 7.19657 7.54446 8.03858 8.29051 8.41033 8.75304 8.91941 9.47028 11.01321 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021804 B = 0.004982 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.843341 B = 5618.656106 C = 6305.907959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.577 5.577 3 C 0.217 3.783 4 C -0.531 4.531 5 H 0.075 0.925 6 C 0.074 3.926 7 N -0.896 5.896 8 Si 0.874 3.126 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.264 1.264 12 C 0.578 3.422 13 O -0.540 6.540 14 C -0.021 4.021 15 C -0.208 4.208 16 C -0.012 4.012 17 N -0.284 5.284 18 N -0.253 5.253 19 C 0.135 3.865 20 C -0.131 4.131 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.128 4.128 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.030 0.970 29 H 0.265 0.735 30 H 0.171 0.829 31 H 0.182 0.818 32 H 0.133 0.867 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.554 -15.480 -9.691 18.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.307 5.307 3 C 0.097 3.903 4 C -0.569 4.569 5 H 0.094 0.906 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.701 3.299 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.188 1.188 12 C 0.364 3.636 13 O -0.419 6.419 14 C -0.150 4.150 15 C -0.237 4.237 16 C -0.188 4.188 17 N -0.116 5.116 18 N -0.040 5.040 19 C 0.034 3.966 20 C -0.169 4.169 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.167 4.167 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.188 0.812 31 H 0.199 0.801 32 H 0.151 0.849 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.194 -16.328 -9.918 19.370 hybrid contribution -0.234 1.532 -0.107 1.554 sum -3.428 -14.796 -10.026 18.199 Atomic orbital electron populations 1.22250 0.80644 1.02836 1.01584 1.47544 1.06645 1.06368 1.70131 1.19785 0.92564 0.79229 0.98712 1.21300 1.37255 1.07294 0.91099 0.90646 1.24846 0.95156 0.97296 0.95593 1.69889 1.41319 1.23497 1.18675 0.86873 0.78997 0.80842 0.83198 1.20001 1.20862 1.18838 1.16862 0.86474 0.82137 0.78133 1.90722 1.13050 1.86792 1.51337 1.21736 0.94907 0.88761 1.09567 1.22818 0.94818 0.97776 1.08266 1.23531 0.96876 0.93058 1.05346 1.73026 0.97856 1.20704 1.20037 1.45866 1.09812 1.02979 1.45371 1.22702 0.76469 1.02670 0.94760 1.22749 1.00435 0.98265 0.95462 1.22469 0.98038 0.98583 0.96759 1.22329 1.01460 0.97105 0.94852 1.22455 1.00878 0.95516 0.97820 0.92256 0.90845 0.90986 0.93894 0.95164 0.92482 0.81205 0.80142 0.84899 0.89837 0.90835 0.90962 0.91000 0.91263 0.91221 0.90078 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 8.80 59.84 0.53 1.61 16 2 N -0.58 -11.97 2.86 -184.34 -0.53 -12.50 16 3 C 0.22 5.24 4.26 -5.19 -0.02 5.21 16 4 C -0.53 -15.15 9.94 -34.44 -0.34 -15.49 16 5 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 8 Si 0.87 21.16 27.47 -169.99 -4.67 16.49 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 12 C 0.58 12.27 7.59 -12.64 -0.10 12.17 16 13 O -0.54 -13.08 14.26 5.25 0.07 -13.01 16 14 C -0.02 -0.37 6.66 -82.06 -0.55 -0.92 16 15 C -0.21 -3.04 8.75 -38.98 -0.34 -3.38 16 16 C -0.01 -0.16 12.03 -17.43 -0.21 -0.37 16 17 N -0.28 -4.32 11.07 30.59 0.34 -3.98 16 18 N -0.25 -4.12 3.03 -49.61 -0.15 -4.27 16 19 C 0.13 1.98 3.52 -66.81 -0.23 1.74 16 20 C -0.13 -1.55 6.50 -25.03 -0.16 -1.71 16 21 C -0.12 -1.15 6.91 -24.70 -0.17 -1.32 16 22 C -0.12 -1.22 6.83 -25.07 -0.17 -1.39 16 23 C -0.13 -1.68 6.53 -25.62 -0.17 -1.85 16 24 H 0.06 0.88 7.35 -51.93 -0.38 0.50 16 25 H 0.07 0.94 5.37 -51.93 -0.28 0.66 16 26 H 0.07 1.01 7.82 -51.93 -0.41 0.61 16 27 H 0.04 1.10 6.48 -51.93 -0.34 0.77 16 28 H 0.03 0.67 7.28 -51.93 -0.38 0.30 16 29 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.17 2.09 5.02 -52.49 -0.26 1.83 16 31 H 0.18 1.72 8.06 -52.48 -0.42 1.30 16 32 H 0.13 2.25 5.72 -51.93 -0.30 1.95 16 33 H 0.08 1.03 7.48 -51.93 -0.39 0.64 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 1.07 7.87 -51.93 -0.41 0.66 16 LS Contribution 320.87 15.07 4.84 4.84 Total: -1.00 -33.64 320.87 -7.05 -40.69 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -5.69 Total: 2.08 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -2.03 Total: -3.65 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.44 Total: -47.42 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.07 Total: -13.01 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.64 -7.05 -40.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332445942.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.533 kcal (2) G-P(sol) polarization free energy of solvation -33.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds