Wall clock time and date at job start Mon Mar 30 2020 01:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 119.99775 * 2 1 4 4 C 1.50699 * 109.46500 * 90.00381 * 3 2 1 5 5 H 1.07998 * 120.00966 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99889 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00501 * 180.02562 * 6 4 3 8 8 Si 1.86804 * 119.99759 * 359.97438 * 6 4 3 9 9 H 1.48494 * 109.47224 * 90.00525 * 8 6 4 10 10 H 1.48504 * 109.46822 * 210.00180 * 8 6 4 11 11 H 1.48501 * 109.47350 * 329.99802 * 8 6 4 12 12 C 1.34775 * 120.00520 * 180.02562 * 2 1 3 13 13 O 1.21626 * 120.00529 * 180.44462 * 12 2 1 14 14 C 1.47163 * 119.99547 * 0.43997 * 12 2 1 15 15 C 1.38403 * 126.88609 * 342.14689 * 14 12 2 16 16 C 1.39676 * 105.35994 * 180.02562 * 15 14 12 17 17 N 1.30869 * 107.86328 * 0.02562 * 16 15 14 18 18 N 1.28447 * 110.92130 * 359.71062 * 17 16 15 19 19 C 1.46498 * 125.18893 * 180.27903 * 18 17 16 20 20 C 1.54273 * 110.03046 * 52.84886 * 19 18 17 21 21 C 1.54963 * 104.16248 * 217.13592 * 20 19 18 22 22 C 1.54895 * 102.77705 * 37.88578 * 21 20 19 23 23 C 1.53875 * 110.03616 * 295.63685 * 19 18 17 24 24 H 1.09003 * 109.47452 * 263.36517 * 1 2 3 25 25 H 1.09003 * 109.47391 * 143.37502 * 1 2 3 26 26 H 1.08995 * 109.47563 * 23.36868 * 1 2 3 27 27 H 1.08997 * 109.47398 * 209.99812 * 3 2 1 28 28 H 1.09000 * 109.47278 * 330.00711 * 3 2 1 29 29 H 0.96994 * 120.00644 * 179.97438 * 7 6 4 30 30 H 1.08002 * 127.32414 * 0.02562 * 15 14 12 31 31 H 1.08004 * 126.06905 * 180.02562 * 16 15 14 32 32 H 1.08997 * 110.02090 * 174.23955 * 19 18 17 33 33 H 1.08995 * 110.48486 * 335.78679 * 20 19 18 34 34 H 1.09002 * 110.48414 * 98.42869 * 20 19 18 35 35 H 1.08998 * 110.72161 * 279.57733 * 21 20 19 36 36 H 1.09001 * 110.76796 * 156.22181 * 21 20 19 37 37 H 1.08997 * 110.48756 * 203.40352 * 22 21 20 38 38 H 1.09004 * 110.59524 * 80.81839 * 22 21 20 39 39 H 1.09002 * 110.03100 * 238.56889 * 23 19 18 40 40 H 1.09003 * 110.02559 * 359.94571 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 1.4209 5 1 2.0981 1.0957 2.2418 6 6 3.1259 2.8779 1.6729 7 7 3.3455 3.2573 2.9129 8 14 3.7327 3.9293 0.2531 9 1 2.6809 4.9075 -0.1233 10 1 4.9603 4.6564 0.6651 11 1 4.0397 3.0598 -0.9109 12 6 2.1389 -1.1671 -0.0005 13 8 3.3552 -1.1671 0.0077 14 6 1.4032 -2.4416 -0.0109 15 6 0.0731 -2.6356 0.3188 16 6 -0.1529 -4.0042 0.1549 17 7 0.9684 -4.5518 -0.2396 18 7 1.8950 -3.6694 -0.3522 19 6 3.2705 -3.9393 -0.7780 20 6 3.2684 -4.7061 -2.1166 21 6 4.4507 -5.6994 -1.9865 22 6 4.3712 -6.1339 -0.5018 23 6 3.9716 -4.8465 0.2482 24 1 -0.3634 -0.1187 1.0208 25 1 -0.3634 -0.8248 -0.6131 26 1 -0.3634 0.9433 -0.4076 27 1 3.1498 1.1386 -0.5138 28 1 1.6083 2.0285 -0.5137 29 1 3.8223 4.0831 3.0902 30 1 -0.6389 -1.8878 0.6356 31 1 -1.0872 -4.5192 0.3237 32 1 3.8185 -3.0032 -0.8848 33 1 2.3300 -5.2452 -2.2460 34 1 3.4341 -4.0216 -2.9486 35 1 5.3978 -5.2008 -2.1927 36 1 4.3113 -6.5549 -2.6473 37 1 5.3412 -6.4913 -0.1564 38 1 3.6120 -6.9046 -0.3680 39 1 4.8604 -4.3509 0.6389 40 1 3.2887 -5.0851 1.0636 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332445942.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:23 Heat of formation + Delta-G solvation = 30.765944 kcal Electronic energy + Delta-G solvation = -22008.119054 eV Core-core repulsion = 18824.127575 eV Total energy + Delta-G solvation = -3183.991479 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.61645 -40.45461 -38.96261 -36.86096 -34.81722 -33.23853 -32.35087 -30.02778 -29.83449 -28.73552 -27.68435 -25.28247 -23.20925 -23.05334 -21.71358 -21.43989 -19.91954 -19.17744 -18.37170 -17.53095 -17.14066 -16.87171 -16.60590 -16.09363 -15.84817 -15.32673 -15.02609 -14.98816 -14.46514 -14.41907 -14.05921 -13.84766 -13.69631 -13.25575 -12.94558 -12.75562 -12.61562 -12.38261 -12.18995 -12.11998 -12.08610 -12.01699 -11.77478 -11.57267 -11.51963 -10.93699 -10.83014 -10.19878 -9.92582 -9.51882 -8.34944 -6.41254 0.28753 1.32744 1.33747 1.39534 1.47931 1.70128 2.13728 2.25588 2.30967 2.98868 3.32701 3.45202 3.46674 3.79188 3.91852 4.17511 4.28637 4.31860 4.36048 4.39192 4.44315 4.56880 4.63945 4.67823 4.70834 4.74152 4.86131 4.87945 4.92280 4.95146 5.07729 5.11152 5.13372 5.36175 5.41003 5.49057 5.60868 5.81907 6.19440 6.45854 6.60150 7.05795 7.14904 7.25678 8.82195 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021804 B = 0.004982 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.843341 B = 5618.656106 C = 6305.907959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.585 5.585 3 C 0.225 3.775 4 C -0.540 4.540 5 H 0.026 0.974 6 C 0.013 3.987 7 N -0.945 5.945 8 Si 0.949 3.051 9 H -0.248 1.248 10 H -0.282 1.282 11 H -0.254 1.254 12 C 0.570 3.430 13 O -0.586 6.586 14 C -0.058 4.058 15 C -0.192 4.192 16 C -0.004 4.004 17 N -0.288 5.288 18 N -0.258 5.258 19 C 0.124 3.876 20 C -0.124 4.124 21 C -0.113 4.113 22 C -0.111 4.111 23 C -0.128 4.128 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.088 0.912 27 H 0.025 0.975 28 H 0.060 0.940 29 H 0.269 0.731 30 H 0.194 0.806 31 H 0.225 0.775 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.047 -16.514 -11.808 21.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.314 5.314 3 C 0.104 3.896 4 C -0.578 4.578 5 H 0.045 0.955 6 C -0.185 4.185 7 N -0.585 5.585 8 Si 0.771 3.229 9 H -0.172 1.172 10 H -0.208 1.208 11 H -0.178 1.178 12 C 0.358 3.642 13 O -0.468 6.468 14 C -0.186 4.186 15 C -0.220 4.220 16 C -0.180 4.180 17 N -0.120 5.120 18 N -0.046 5.046 19 C 0.024 3.976 20 C -0.162 4.162 21 C -0.151 4.151 22 C -0.149 4.149 23 C -0.166 4.166 24 H 0.082 0.918 25 H 0.122 0.878 26 H 0.107 0.893 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.211 0.789 31 H 0.241 0.759 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.739 -17.378 -12.044 21.668 hybrid contribution 0.158 1.779 0.669 1.907 sum -4.580 -15.600 -11.374 19.842 Atomic orbital electron populations 1.22566 0.77399 1.05132 1.02680 1.47613 1.08741 1.05196 1.69879 1.19493 0.92960 0.81474 0.95709 1.21507 1.37238 1.06885 0.92178 0.95525 1.25860 0.95099 0.98870 0.98717 1.70050 1.42581 1.24457 1.21416 0.85693 0.78875 0.79020 0.79267 1.17238 1.20805 1.17775 1.17403 0.86253 0.83464 0.77126 1.90685 1.15138 1.87664 1.53339 1.21482 0.96183 0.88015 1.12933 1.23172 0.93573 0.99063 1.06225 1.24250 0.97642 0.92542 1.03536 1.73042 0.98313 1.20589 1.20058 1.46006 1.10378 1.02618 1.45568 1.22784 0.76083 1.01870 0.96874 1.22723 1.01389 0.98388 0.93676 1.22485 0.97218 0.98717 0.96645 1.22310 1.02419 0.95347 0.94817 1.22450 0.99901 0.96883 0.97393 0.91820 0.87844 0.89288 0.95734 0.92259 0.92180 0.78910 0.75892 0.87975 0.90058 0.90705 0.90384 0.88635 0.89541 0.90747 0.91045 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.85 8.80 127.77 1.12 2.97 16 2 N -0.58 -24.42 2.86 -855.36 -2.44 -26.86 16 3 C 0.23 10.92 4.26 85.63 0.37 11.29 16 4 C -0.54 -31.80 9.94 25.60 0.25 -31.55 16 5 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 6 C 0.01 0.75 5.47 84.66 0.46 1.21 16 7 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 8 Si 0.95 43.71 27.47 68.60 1.88 45.60 16 9 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 12 C 0.57 24.94 7.59 86.59 0.66 25.60 16 13 O -0.59 -30.11 14.26 -4.11 -0.06 -30.17 16 14 C -0.06 -2.06 6.66 40.79 0.27 -1.79 16 15 C -0.19 -5.18 8.75 22.66 0.20 -4.98 16 16 C 0.00 -0.10 12.03 85.18 1.02 0.93 16 17 N -0.29 -8.27 11.07 -57.13 -0.63 -8.90 16 18 N -0.26 -8.38 3.03 -310.88 -0.94 -9.33 16 19 C 0.12 3.76 3.52 45.72 0.16 3.92 16 20 C -0.12 -2.83 6.50 31.70 0.21 -2.62 16 21 C -0.11 -1.94 6.91 31.91 0.22 -1.72 16 22 C -0.11 -2.10 6.83 31.67 0.22 -1.89 16 23 C -0.13 -3.44 6.53 31.32 0.20 -3.23 16 24 H 0.06 1.80 7.35 -2.39 -0.02 1.78 16 25 H 0.10 2.37 5.37 -2.39 -0.01 2.36 16 26 H 0.09 2.28 7.82 -2.39 -0.02 2.26 16 27 H 0.02 1.28 6.48 -2.39 -0.02 1.27 16 28 H 0.06 2.53 7.28 -2.39 -0.02 2.52 16 29 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 30 H 0.19 4.15 5.02 -2.91 -0.01 4.14 16 31 H 0.22 3.18 8.06 -2.91 -0.02 3.15 16 32 H 0.10 3.72 5.72 -2.39 -0.01 3.71 16 33 H 0.08 1.90 7.48 -2.39 -0.02 1.88 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.06 1.70 7.87 -2.39 -0.02 1.68 16 Total: -1.00 -77.61 320.87 4.46 -73.15 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.98 Total: 17.79 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 5.37 Total: -1.86 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -3.72 Total: -104.51 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.06 Total: -30.17 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.60 kcal Total: -77.61 4.46 -73.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332445942.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.914 kcal (2) G-P(sol) polarization free energy of solvation -77.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds