Wall clock time and date at job start Mon Mar 30 2020 02:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00043 * 2 1 4 4 H 1.48507 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47111 * 299.99811 * 3 2 1 6 6 H 1.48498 * 109.47294 * 59.99932 * 3 2 1 7 7 C 1.37883 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99992 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99885 * 0.02562 * 7 2 1 10 10 C 1.53353 * 109.41604 * 300.12400 * 9 7 2 11 11 C 1.53190 * 109.15193 * 178.67159 * 10 9 7 12 12 N 1.46937 * 108.88805 * 54.57853 * 11 10 9 13 13 C 1.34779 * 120.62689 * 126.29640 * 12 11 10 14 14 O 1.21279 * 119.99952 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99655 * 180.02562 * 13 12 11 16 16 H 1.08997 * 115.55952 * 57.45311 * 15 13 12 17 17 C 1.53093 * 117.50906 * 203.23509 * 15 13 12 18 18 C 1.52558 * 117.50797 * 271.73316 * 15 13 12 19 19 C 1.53873 * 120.82055 * 142.33554 * 18 15 13 20 20 C 1.54992 * 104.06090 * 192.36543 * 19 18 15 21 21 C 1.54922 * 102.82241 * 37.56718 * 20 19 18 22 22 C 1.53478 * 121.09006 * 2.96798 * 18 15 13 23 23 C 1.46920 * 118.73880 * 306.32440 * 12 11 10 24 24 C 1.53034 * 109.46090 * 180.02562 * 9 7 2 25 25 H 0.96999 * 120.00087 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46232 * 60.02169 * 9 7 2 27 27 H 1.09004 * 109.68322 * 58.71235 * 10 9 7 28 28 H 1.09004 * 109.47755 * 298.51342 * 10 9 7 29 29 H 1.08995 * 109.58877 * 294.72846 * 11 10 9 30 30 H 1.08997 * 109.59137 * 174.43128 * 11 10 9 31 31 H 1.08992 * 117.51146 * 214.91646 * 17 15 13 32 32 H 1.09000 * 117.51030 * 0.02562 * 17 15 13 33 33 H 1.08995 * 110.51214 * 311.00943 * 19 18 15 34 34 H 1.08997 * 110.51334 * 73.72237 * 19 18 15 35 35 H 1.09003 * 110.74367 * 279.23260 * 20 19 18 36 36 H 1.09006 * 110.89849 * 155.96837 * 20 19 18 37 37 H 1.09000 * 110.48641 * 203.59494 * 21 20 19 38 38 H 1.08999 * 110.59458 * 81.01429 * 21 20 19 39 39 H 1.08994 * 110.07397 * 263.30296 * 22 18 15 40 40 H 1.09004 * 110.06918 * 24.77846 * 22 18 15 41 41 H 1.09006 * 109.58728 * 173.39734 * 23 12 11 42 42 H 1.09001 * 109.58576 * 293.67362 * 23 12 11 43 43 H 1.08994 * 109.50290 * 61.42742 * 24 9 7 44 44 H 1.09004 * 109.51988 * 301.34879 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 0.3671 -2.5775 1.2512 11 6 -0.4207 -3.8911 1.2283 12 7 0.5221 -5.0087 1.0828 13 6 0.5114 -6.0343 1.9572 14 8 -0.2817 -6.0407 2.8747 15 6 1.4851 -7.1730 1.7947 16 1 2.5387 -6.8939 1.7911 17 6 1.1113 -8.5180 2.4230 18 6 1.0624 -8.3406 0.9085 19 6 2.0813 -9.0493 -0.0009 20 6 1.2073 -9.9224 -0.9370 21 6 -0.0251 -9.0203 -1.1969 22 6 -0.2754 -8.3210 0.1565 23 6 1.4768 -4.9866 -0.0337 24 6 2.2458 -3.6622 0.0018 25 1 -0.4850 0.8400 0.0004 26 1 0.6252 -2.5572 -0.8899 27 1 -0.3271 -1.7372 1.2633 28 1 0.9942 -2.5448 2.1422 29 1 -1.1145 -3.8865 0.3877 30 1 -0.9759 -4.0005 2.1599 31 1 1.9192 -9.1240 2.8331 32 1 0.1610 -8.5793 2.9534 33 1 2.6493 -8.3203 -0.5789 34 1 2.7505 -9.6747 0.5899 35 1 0.9117 -10.8458 -0.4389 36 1 1.7309 -10.1383 -1.8683 37 1 -0.8873 -9.6244 -1.4793 38 1 0.1944 -8.2851 -1.9712 39 1 -1.0314 -8.8638 0.7238 40 1 -0.5977 -7.2925 -0.0068 41 1 2.1753 -5.8175 0.0663 42 1 0.9379 -5.0739 -0.9771 43 1 2.8551 -3.6189 0.9046 44 1 2.8894 -3.5919 -0.8751 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334218347.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:17 Heat of formation + Delta-G solvation = -35.061351 kcal Electronic energy + Delta-G solvation = -22493.068122 eV Core-core repulsion = 19409.762501 eV Total energy + Delta-G solvation = -3083.305621 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.31733 -38.37799 -36.69962 -34.14052 -33.47600 -31.03999 -30.23656 -28.87134 -26.47784 -25.68302 -24.13106 -22.77342 -21.81441 -20.92586 -19.81064 -18.98280 -17.91566 -16.84046 -16.20871 -15.92447 -15.55040 -15.19464 -14.56537 -14.17055 -13.81112 -13.42329 -13.17096 -13.00457 -12.80470 -12.69520 -12.47075 -12.15530 -11.90497 -11.74720 -11.26062 -11.19189 -11.17735 -11.05753 -10.96086 -10.70224 -10.62486 -10.41699 -10.26180 -10.04491 -9.83105 -9.57047 -9.40450 -9.09336 -8.90398 -8.37605 -7.96439 -6.02294 -4.08953 2.88648 3.27476 3.36057 3.39161 3.42996 3.77657 4.32482 4.41031 4.50140 4.74054 4.74304 4.95560 5.03755 5.24650 5.27831 5.33953 5.50112 5.52429 5.61986 5.68542 5.72959 5.77532 5.81553 5.84491 5.94106 5.97441 6.03122 6.05711 6.10721 6.20310 6.22422 6.29018 6.43009 6.47355 6.63544 6.87086 6.97243 7.20778 7.34196 7.69704 7.91361 7.96813 8.06564 8.39932 8.62824 8.94637 9.56271 11.03170 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029820 B = 0.004213 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.754164 B = 6645.235949 C = 6933.535620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.049 3.951 10 C -0.122 4.122 11 C 0.108 3.892 12 N -0.594 5.594 13 C 0.541 3.459 14 O -0.556 6.556 15 C -0.173 4.173 16 H 0.124 0.876 17 C -0.138 4.138 18 C -0.106 4.106 19 C -0.090 4.090 20 C -0.121 4.121 21 C -0.122 4.122 22 C -0.093 4.093 23 C 0.111 3.889 24 C -0.125 4.125 25 H 0.260 0.740 26 H 0.027 0.973 27 H 0.103 0.897 28 H 0.037 0.963 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.410 -17.936 -1.674 18.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.160 4.160 11 C -0.013 4.013 12 N -0.326 5.326 13 C 0.329 3.671 14 O -0.435 6.435 15 C -0.194 4.194 16 H 0.142 0.858 17 C -0.175 4.175 18 C -0.106 4.106 19 C -0.127 4.127 20 C -0.158 4.158 21 C -0.159 4.159 22 C -0.131 4.131 23 C -0.012 4.012 24 C -0.163 4.163 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.121 0.879 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.831 -17.784 -1.212 17.919 hybrid contribution 0.592 1.157 0.028 1.299 sum 2.423 -16.627 -1.183 16.844 Atomic orbital electron populations 1.69856 1.05869 1.26370 1.50810 1.24966 0.94848 0.99076 0.95069 0.86570 0.80138 0.83911 0.77573 1.19850 1.21054 1.21049 1.21231 0.92911 0.90599 1.50385 0.92685 1.18688 0.92573 0.91633 0.94079 1.22059 1.00001 0.94725 0.99241 1.21884 0.91524 0.86633 1.01279 1.48174 1.35839 1.20944 1.27627 1.19530 0.83606 0.82449 0.81545 1.90636 1.40962 1.79110 1.32789 1.22276 1.00129 0.89460 1.07501 0.85795 1.23032 1.03722 0.96575 0.94185 1.21814 0.97520 0.99120 0.92171 1.21931 0.96226 0.97981 0.96551 1.22454 0.96269 0.98037 0.99070 1.22338 0.97974 0.98545 0.97059 1.21678 0.94762 1.01336 0.95276 1.21808 0.91373 0.99338 0.88691 1.22018 0.98958 0.94398 1.00916 0.93012 0.95507 0.87888 0.94402 0.92399 0.90727 0.88229 0.87846 0.90831 0.91451 0.91518 0.91488 0.91696 0.91361 0.91466 0.91272 0.91137 0.92062 0.92934 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.83 11.31 55.43 0.63 -24.20 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -13.68 8.56 -34.44 -0.29 -13.97 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.05 1.16 2.07 -91.57 -0.19 0.97 16 10 C -0.12 -2.84 5.17 -26.45 -0.14 -2.98 16 11 C 0.11 2.21 6.42 -3.71 -0.02 2.18 16 12 N -0.59 -10.83 2.97 -172.77 -0.51 -11.34 16 13 C 0.54 9.69 6.15 -10.99 -0.07 9.62 16 14 O -0.56 -11.79 15.93 5.56 0.09 -11.70 16 15 C -0.17 -2.36 4.25 -91.95 -0.39 -2.75 16 16 H 0.12 1.55 7.71 -51.93 -0.40 1.15 16 17 C -0.14 -1.64 9.75 -26.90 -0.26 -1.90 16 18 C -0.11 -1.20 2.44 -154.25 -0.38 -1.58 16 19 C -0.09 -0.81 6.58 -25.22 -0.17 -0.98 16 20 C -0.12 -1.00 6.91 -24.67 -0.17 -1.17 16 21 C -0.12 -1.15 6.84 -24.99 -0.17 -1.32 16 22 C -0.09 -1.10 6.19 -25.75 -0.16 -1.26 16 23 C 0.11 1.81 6.35 -3.71 -0.02 1.78 16 24 C -0.12 -2.42 5.30 -26.62 -0.14 -2.56 16 25 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.10 2.68 6.05 -51.93 -0.31 2.37 16 28 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.56 7.00 -51.93 -0.36 1.20 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.10 1.37 7.86 -51.93 -0.41 0.97 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.96 7.25 -51.93 -0.38 0.59 16 41 H 0.07 0.96 6.06 -51.93 -0.31 0.65 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 341.29 15.07 5.14 5.14 Total: -1.00 -29.37 341.29 -9.98 -39.36 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -7.64 Total: 1.16 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -2.67 Total: -14.35 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.11 Total: -35.55 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.37 -9.98 -39.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334218347.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.294 kcal (2) G-P(sol) polarization free energy of solvation -29.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds