Wall clock time and date at job start Mon Mar 30 2020 02:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00043 * 2 1 4 4 H 1.48507 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47111 * 299.99811 * 3 2 1 6 6 H 1.48498 * 109.47294 * 59.99932 * 3 2 1 7 7 C 1.37883 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99992 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99885 * 0.02562 * 7 2 1 10 10 C 1.53353 * 109.41604 * 300.12400 * 9 7 2 11 11 C 1.53190 * 109.15193 * 178.67159 * 10 9 7 12 12 N 1.46937 * 108.88805 * 54.57853 * 11 10 9 13 13 C 1.34779 * 120.62689 * 126.29640 * 12 11 10 14 14 O 1.21279 * 119.99952 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99655 * 180.02562 * 13 12 11 16 16 H 1.08997 * 115.55952 * 57.45311 * 15 13 12 17 17 C 1.53093 * 117.50906 * 203.23509 * 15 13 12 18 18 C 1.52558 * 117.50797 * 271.73316 * 15 13 12 19 19 C 1.53873 * 120.82055 * 142.33554 * 18 15 13 20 20 C 1.54992 * 104.06090 * 192.36543 * 19 18 15 21 21 C 1.54922 * 102.82241 * 37.56718 * 20 19 18 22 22 C 1.53478 * 121.09006 * 2.96798 * 18 15 13 23 23 C 1.46920 * 118.73880 * 306.32440 * 12 11 10 24 24 C 1.53034 * 109.46090 * 180.02562 * 9 7 2 25 25 H 0.96999 * 120.00087 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46232 * 60.02169 * 9 7 2 27 27 H 1.09004 * 109.68322 * 58.71235 * 10 9 7 28 28 H 1.09004 * 109.47755 * 298.51342 * 10 9 7 29 29 H 1.08995 * 109.58877 * 294.72846 * 11 10 9 30 30 H 1.08997 * 109.59137 * 174.43128 * 11 10 9 31 31 H 1.08992 * 117.51146 * 214.91646 * 17 15 13 32 32 H 1.09000 * 117.51030 * 0.02562 * 17 15 13 33 33 H 1.08995 * 110.51214 * 311.00943 * 19 18 15 34 34 H 1.08997 * 110.51334 * 73.72237 * 19 18 15 35 35 H 1.09003 * 110.74367 * 279.23260 * 20 19 18 36 36 H 1.09006 * 110.89849 * 155.96837 * 20 19 18 37 37 H 1.09000 * 110.48641 * 203.59494 * 21 20 19 38 38 H 1.08999 * 110.59458 * 81.01429 * 21 20 19 39 39 H 1.08994 * 110.07397 * 263.30296 * 22 18 15 40 40 H 1.09004 * 110.06918 * 24.77846 * 22 18 15 41 41 H 1.09006 * 109.58728 * 173.39734 * 23 12 11 42 42 H 1.09001 * 109.58576 * 293.67362 * 23 12 11 43 43 H 1.08994 * 109.50290 * 61.42742 * 24 9 7 44 44 H 1.09004 * 109.51988 * 301.34879 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 0.3671 -2.5775 1.2512 11 6 -0.4207 -3.8911 1.2283 12 7 0.5221 -5.0087 1.0828 13 6 0.5114 -6.0343 1.9572 14 8 -0.2817 -6.0407 2.8747 15 6 1.4851 -7.1730 1.7947 16 1 2.5387 -6.8939 1.7911 17 6 1.1113 -8.5180 2.4230 18 6 1.0624 -8.3406 0.9085 19 6 2.0813 -9.0493 -0.0009 20 6 1.2073 -9.9224 -0.9370 21 6 -0.0251 -9.0203 -1.1969 22 6 -0.2754 -8.3210 0.1565 23 6 1.4768 -4.9866 -0.0337 24 6 2.2458 -3.6622 0.0018 25 1 -0.4850 0.8400 0.0004 26 1 0.6252 -2.5572 -0.8899 27 1 -0.3271 -1.7372 1.2633 28 1 0.9942 -2.5448 2.1422 29 1 -1.1145 -3.8865 0.3877 30 1 -0.9759 -4.0005 2.1599 31 1 1.9192 -9.1240 2.8331 32 1 0.1610 -8.5793 2.9534 33 1 2.6493 -8.3203 -0.5789 34 1 2.7505 -9.6747 0.5899 35 1 0.9117 -10.8458 -0.4389 36 1 1.7309 -10.1383 -1.8683 37 1 -0.8873 -9.6244 -1.4793 38 1 0.1944 -8.2851 -1.9712 39 1 -1.0314 -8.8638 0.7238 40 1 -0.5977 -7.2925 -0.0068 41 1 2.1753 -5.8175 0.0663 42 1 0.9379 -5.0739 -0.9771 43 1 2.8551 -3.6189 0.9046 44 1 2.8894 -3.5919 -0.8751 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334218347.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:16 Heat of formation + Delta-G solvation = -49.678593 kcal Electronic energy + Delta-G solvation = -22493.701974 eV Core-core repulsion = 19409.762501 eV Total energy + Delta-G solvation = -3083.939473 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.57204 -39.55598 -38.26626 -35.35662 -35.02477 -32.88352 -31.88282 -29.63962 -28.20844 -26.66984 -25.52767 -24.37895 -23.38601 -21.72592 -21.24619 -20.18785 -19.24695 -18.54940 -17.86538 -16.90993 -16.83549 -16.52685 -16.18932 -15.45424 -15.12145 -14.93395 -14.63175 -14.43861 -14.13845 -13.93750 -13.81780 -13.33475 -13.24542 -13.07594 -13.02540 -12.84436 -12.42869 -12.18364 -12.00691 -11.98770 -11.94513 -11.81209 -11.45334 -11.38485 -11.20673 -11.13941 -10.87972 -10.79044 -10.51062 -10.40918 -9.56014 -8.08863 -6.22897 1.39576 1.42463 1.52616 1.54288 2.04691 2.43054 2.74701 3.18016 3.37100 3.63602 3.76795 3.86334 3.94738 4.13164 4.28970 4.29875 4.33652 4.39409 4.48024 4.57904 4.58554 4.68167 4.76534 4.80317 4.88314 4.92405 4.92926 4.96568 5.02055 5.09645 5.14359 5.16595 5.23429 5.27156 5.29950 5.40300 5.44264 5.51370 5.53542 5.66390 5.95819 6.08813 6.36633 6.53104 6.88913 7.18762 7.45627 8.94960 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029820 B = 0.004213 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.754164 B = 6645.235949 C = 6933.535620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.285 1.285 7 C -0.532 4.532 8 H 0.054 0.946 9 C 0.045 3.955 10 C -0.110 4.110 11 C 0.119 3.881 12 N -0.597 5.597 13 C 0.537 3.463 14 O -0.597 6.597 15 C -0.188 4.188 16 H 0.145 0.855 17 C -0.133 4.133 18 C -0.091 4.091 19 C -0.086 4.086 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.099 4.099 23 C 0.118 3.882 24 C -0.117 4.117 25 H 0.260 0.740 26 H 0.003 0.997 27 H 0.072 0.928 28 H 0.021 0.979 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.130 0.870 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.042 0.958 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.047 0.953 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.556 -20.039 -2.617 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.211 1.211 7 C -0.570 4.570 8 H 0.072 0.928 9 C 0.027 3.973 10 C -0.148 4.148 11 C -0.003 4.003 12 N -0.328 5.328 13 C 0.327 3.673 14 O -0.479 6.479 15 C -0.209 4.209 16 H 0.162 0.838 17 C -0.170 4.170 18 C -0.091 4.091 19 C -0.124 4.124 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.137 4.137 23 C -0.004 4.004 24 C -0.155 4.155 25 H 0.069 0.931 26 H 0.021 0.979 27 H 0.090 0.910 28 H 0.040 0.960 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.148 0.852 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.126 0.874 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.999 -19.902 -2.172 20.416 hybrid contribution -0.147 1.825 0.343 1.863 sum 3.853 -18.077 -1.829 18.573 Atomic orbital electron populations 1.69991 1.07140 1.27017 1.51509 1.25723 0.95625 1.02325 0.94910 0.85610 0.79222 0.80011 0.77429 1.19045 1.20602 1.21113 1.21625 0.93120 0.92091 1.50130 0.92774 1.18663 0.93090 0.92753 0.92808 1.21814 0.99259 0.95306 0.98471 1.21531 0.91640 0.86356 1.00818 1.48213 1.35747 1.20402 1.28450 1.20319 0.83638 0.82983 0.80336 1.90610 1.42887 1.79998 1.34367 1.22276 0.99666 0.88476 1.10449 0.83765 1.23122 1.03747 0.95438 0.94721 1.21946 0.97925 0.97033 0.92245 1.22000 0.95831 0.98223 0.96305 1.22460 0.95340 0.97735 0.99757 1.22338 0.99214 0.98740 0.95408 1.21725 0.95093 0.99961 0.96931 1.21872 0.91354 0.98821 0.88332 1.21883 0.98145 0.94134 1.01316 0.93089 0.97916 0.91001 0.96049 0.92230 0.91813 0.85240 0.89880 0.90127 0.89609 0.90841 0.89851 0.90974 0.91445 0.92131 0.93923 0.87385 0.91171 0.93440 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.54 11.31 21.45 0.24 -52.30 16 2 C 0.01 0.69 5.30 84.66 0.45 1.14 16 3 Si 0.95 43.32 29.54 68.60 2.03 45.34 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.53 -28.66 8.56 25.60 0.22 -28.44 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 9 C 0.05 2.20 2.07 -11.41 -0.02 2.17 16 10 C -0.11 -5.33 5.17 30.78 0.16 -5.18 16 11 C 0.12 5.04 6.42 86.36 0.55 5.59 16 12 N -0.60 -21.65 2.97 -818.90 -2.43 -24.09 16 13 C 0.54 19.06 6.15 87.66 0.54 19.60 16 14 O -0.60 -25.87 15.93 -3.03 -0.05 -25.92 16 15 C -0.19 -4.72 4.25 -11.66 -0.05 -4.77 16 16 H 0.14 3.06 7.71 -2.39 -0.02 3.04 16 17 C -0.13 -2.86 9.75 30.48 0.30 -2.56 16 18 C -0.09 -1.82 2.44 -52.02 -0.13 -1.95 16 19 C -0.09 -1.19 6.58 31.57 0.21 -0.98 16 20 C -0.12 -1.45 6.91 31.93 0.22 -1.23 16 21 C -0.12 -1.97 6.84 31.72 0.22 -1.75 16 22 C -0.10 -2.21 6.19 31.23 0.19 -2.02 16 23 C 0.12 3.63 6.35 86.36 0.55 4.18 16 24 C -0.12 -4.39 5.30 30.67 0.16 -4.23 16 25 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 26 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 27 H 0.07 3.94 6.05 -2.38 -0.01 3.93 16 28 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.06 2.81 7.00 -2.39 -0.02 2.79 16 31 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.08 2.15 7.86 -2.39 -0.02 2.13 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.09 0.93 8.11 -2.39 -0.02 0.91 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.04 1.17 7.25 -2.39 -0.02 1.15 16 41 H 0.11 2.56 6.06 -2.38 -0.01 2.55 16 42 H 0.07 2.07 8.14 -2.39 -0.02 2.06 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 Total: -1.00 -65.63 341.29 4.31 -61.32 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.96 Total: 16.06 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 3.57 Total: -20.41 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -2.19 Total: -76.39 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.05 Total: -25.92 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -65.63 4.31 -61.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334218347.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.642 kcal (2) G-P(sol) polarization free energy of solvation -65.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds