Wall clock time and date at job start Mon Mar 30 2020 02:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99702 * 2 1 4 4 H 1.48507 * 109.46888 * 239.99932 * 3 2 1 5 5 H 1.48494 * 109.47420 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46939 * 120.00431 * 3 2 1 7 7 C 1.37870 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00211 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00156 * 0.02562 * 7 2 1 10 10 C 1.53033 * 109.46207 * 59.92925 * 9 7 2 11 11 C 1.53192 * 109.31270 * 181.38592 * 10 9 7 12 12 N 1.46926 * 108.77820 * 305.36633 * 11 10 9 13 13 C 1.34773 * 120.62904 * 233.58715 * 12 11 10 14 14 O 1.21277 * 120.00553 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99638 * 180.02562 * 13 12 11 16 16 H 1.09001 * 115.57371 * 34.15086 * 15 13 12 17 17 C 1.52305 * 117.53913 * 179.97438 * 15 13 12 18 18 H 1.09005 * 115.91242 * 1.58864 * 17 15 13 19 19 C 1.52074 * 119.84326 * 217.19684 * 17 15 13 20 20 C 1.52873 * 110.51109 * 310.44755 * 19 17 15 21 21 C 1.53301 * 108.59296 * 305.10823 * 20 19 17 22 22 C 1.52879 * 108.57806 * 74.44262 * 21 20 19 23 23 C 1.52072 * 60.63865 * 107.37734 * 17 15 13 24 24 H 1.09003 * 117.25484 * 252.86884 * 23 17 15 25 25 C 1.46927 * 118.73580 * 53.60911 * 12 11 10 26 26 C 1.53041 * 109.46128 * 180.02562 * 9 7 2 27 27 H 0.96994 * 119.99927 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.45730 * 299.97310 * 9 7 2 29 29 H 1.09000 * 109.49457 * 61.43935 * 10 9 7 30 30 H 1.08995 * 109.50116 * 301.34105 * 10 9 7 31 31 H 1.09006 * 109.58809 * 185.57967 * 11 10 9 32 32 H 1.09002 * 109.58657 * 65.15954 * 11 10 9 33 33 H 1.08995 * 109.26646 * 70.71266 * 19 17 15 34 34 H 1.09001 * 109.26823 * 190.18294 * 19 17 15 35 35 H 1.09001 * 109.61452 * 64.84275 * 20 19 17 36 36 H 1.08998 * 109.61592 * 185.37712 * 20 19 17 37 37 H 1.09000 * 109.61498 * 194.17036 * 21 20 19 38 38 H 1.09003 * 109.61729 * 314.71749 * 21 20 19 39 39 H 1.09002 * 109.35677 * 65.68941 * 22 21 20 40 40 H 1.09001 * 109.35587 * 185.40895 * 22 21 20 41 41 H 1.08997 * 109.58859 * 66.17990 * 25 12 11 42 42 H 1.09000 * 109.58547 * 186.60408 * 25 12 11 43 43 H 1.09005 * 109.49689 * 58.66128 * 26 9 7 44 44 H 1.09002 * 109.50075 * 298.56217 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 0.3705 -2.5784 -1.2508 11 6 -0.4197 -3.8906 -1.2311 12 7 0.5228 -5.0082 -1.0854 13 6 0.5122 -6.0339 -1.9597 14 8 -0.2808 -6.0404 -2.8772 15 6 1.4850 -7.1732 -1.7964 16 1 1.7343 -7.4354 -0.7681 17 6 1.4237 -8.3031 -2.8157 18 1 0.6883 -8.1869 -3.6120 19 6 1.6528 -9.7386 -2.3690 20 6 2.9244 -9.8409 -1.5266 21 6 4.0917 -9.2571 -2.3306 22 6 3.9637 -7.7337 -2.3390 23 6 2.5867 -7.3242 -2.8568 24 1 2.5990 -6.5975 -3.6691 25 6 1.4768 -4.9866 0.0318 26 6 2.2459 -3.6622 -0.0015 27 1 -0.4850 0.8400 -0.0004 28 1 0.6245 -2.5575 0.8883 29 1 0.9984 -2.5452 -2.1412 30 1 -0.3220 -1.7368 -1.2618 31 1 -0.9726 -3.9983 -2.1644 32 1 -1.1142 -3.8863 -0.3910 33 1 0.8008 -10.0711 -1.7761 34 1 1.7506 -10.3773 -3.2469 35 1 2.7977 -9.2764 -0.6028 36 1 3.1265 -10.8866 -1.2947 37 1 5.0353 -9.5425 -1.8656 38 1 4.0560 -9.6330 -3.3532 39 1 4.0961 -7.3544 -1.3257 40 1 4.7315 -7.3102 -2.9865 41 1 0.9371 -5.0718 0.9749 42 1 2.1753 -5.8174 -0.0681 43 1 2.8878 -3.5917 0.8767 44 1 2.8564 -3.6190 -0.9034 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335309822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:26 Heat of formation + Delta-G solvation = -38.996536 kcal Electronic energy + Delta-G solvation = -22318.223238 eV Core-core repulsion = 19234.746974 eV Total energy + Delta-G solvation = -3083.476264 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.44909 -38.63239 -36.67316 -33.52706 -33.15091 -31.05430 -30.90322 -30.23252 -26.52672 -25.25014 -23.15068 -22.72378 -22.55196 -21.45593 -19.72283 -18.60923 -17.98859 -17.22915 -16.36293 -15.60994 -15.17737 -14.66091 -14.55759 -14.18125 -14.05176 -13.90572 -13.45917 -13.07846 -12.76917 -12.63951 -12.45508 -12.21584 -12.17220 -11.80793 -11.75040 -11.25533 -11.14892 -10.98855 -10.90760 -10.67774 -10.42127 -10.41045 -10.08374 -9.93006 -9.76418 -9.56358 -9.40196 -9.08960 -8.91144 -8.36744 -7.96128 -6.01709 -4.08664 2.81772 3.29955 3.35189 3.37339 3.44033 3.87246 4.41150 4.51129 4.62065 4.64060 4.87392 4.90488 5.02262 5.19300 5.23287 5.27883 5.40702 5.45735 5.50171 5.55485 5.77520 5.78221 5.80363 5.85707 5.95476 5.97250 6.08945 6.10799 6.13024 6.19920 6.28925 6.30985 6.42893 6.47561 6.63903 6.87444 6.97937 7.20934 7.35097 7.69561 7.91957 7.97408 8.07212 8.40241 8.63420 8.94489 9.56424 11.03691 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030015 B = 0.004093 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.648314 B = 6838.566091 C = 7346.788678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.122 4.122 11 C 0.108 3.892 12 N -0.596 5.596 13 C 0.538 3.462 14 O -0.559 6.559 15 C -0.185 4.185 16 H 0.122 0.878 17 C -0.110 4.110 18 H 0.111 0.889 19 C -0.088 4.088 20 C -0.124 4.124 21 C -0.118 4.118 22 C -0.091 4.091 23 C -0.117 4.117 24 H 0.106 0.894 25 C 0.107 3.893 26 C -0.123 4.123 27 H 0.261 0.739 28 H 0.027 0.973 29 H 0.037 0.963 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.687 -17.709 -1.977 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.160 4.160 11 C -0.013 4.013 12 N -0.327 5.327 13 C 0.326 3.674 14 O -0.439 6.439 15 C -0.206 4.206 16 H 0.139 0.861 17 C -0.128 4.128 18 H 0.129 0.871 19 C -0.125 4.125 20 C -0.161 4.161 21 C -0.156 4.156 22 C -0.129 4.129 23 C -0.136 4.136 24 H 0.124 0.876 25 C -0.016 4.016 26 C -0.161 4.161 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.121 0.879 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.099 -17.545 -2.434 18.433 hybrid contribution 0.433 1.164 0.155 1.252 sum 5.533 -16.381 -2.279 17.440 Atomic orbital electron populations 1.69837 1.05867 1.26603 1.50630 1.24964 0.94857 0.99061 0.95056 0.86676 0.79626 0.83230 0.78569 1.20338 1.21300 1.20316 1.21149 0.92837 0.90605 1.50645 0.92780 1.18632 0.92606 0.91638 0.94098 1.22002 1.00006 0.94771 0.99252 1.21891 0.91532 0.86579 1.01297 1.48142 1.35863 1.20933 1.27774 1.19625 0.83602 0.82545 0.81636 1.90625 1.41008 1.79197 1.33044 1.22481 1.02200 0.98441 0.97513 0.86073 1.21870 1.00045 0.90598 1.00305 0.87105 1.20869 0.97851 0.93932 0.99833 1.21640 0.94967 1.00776 0.98765 1.21567 0.98031 0.95368 1.00600 1.21099 0.94502 0.95818 1.01464 1.22295 0.89999 1.02117 0.99138 0.87630 1.21865 0.91436 0.99619 0.88644 1.22003 0.98931 0.94261 1.00936 0.92889 0.95518 0.94420 0.87876 0.90697 0.92376 0.91426 0.91196 0.91769 0.91800 0.91879 0.91664 0.91262 0.91255 0.92064 0.91067 0.92141 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.91 11.31 55.43 0.63 -24.28 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.51 -13.74 8.56 -34.44 -0.29 -14.03 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.05 1.17 2.06 -91.73 -0.19 0.98 16 10 C -0.12 -2.86 5.15 -26.61 -0.14 -3.00 16 11 C 0.11 2.24 6.43 -3.71 -0.02 2.21 16 12 N -0.60 -11.05 2.97 -172.77 -0.51 -11.57 16 13 C 0.54 9.75 7.49 -10.99 -0.08 9.67 16 14 O -0.56 -11.90 15.60 5.56 0.09 -11.81 16 15 C -0.19 -2.54 4.10 -91.79 -0.38 -2.91 16 16 H 0.12 1.47 5.93 -51.93 -0.31 1.16 16 17 C -0.11 -1.33 5.57 -91.92 -0.51 -1.84 16 18 H 0.11 1.54 7.55 -51.93 -0.39 1.15 16 19 C -0.09 -0.81 5.93 -27.27 -0.16 -0.97 16 20 C -0.12 -1.02 5.70 -26.64 -0.15 -1.17 16 21 C -0.12 -0.97 5.93 -26.64 -0.16 -1.12 16 22 C -0.09 -0.89 5.83 -26.95 -0.16 -1.05 16 23 C -0.12 -1.42 5.90 -90.90 -0.54 -1.96 16 24 H 0.11 1.44 8.14 -51.93 -0.42 1.01 16 25 C 0.11 1.76 6.30 -3.71 -0.02 1.74 16 26 C -0.12 -2.40 5.30 -26.61 -0.14 -2.54 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 2.69 6.03 -51.93 -0.31 2.38 16 31 H 0.07 1.58 7.01 -51.93 -0.36 1.22 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.55 7.11 -51.93 -0.37 0.18 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.53 8.04 -51.93 -0.42 0.11 16 39 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.96 5.67 -51.93 -0.29 0.67 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 335.45 15.07 5.06 5.06 Total: -1.00 -29.44 335.45 -10.30 -39.73 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.49 Total: 1.32 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -3.04 Total: -14.42 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.11 Total: -35.85 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.44 -10.30 -39.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335309822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.737 kcal (2) G-P(sol) polarization free energy of solvation -29.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds