Wall clock time and date at job start Mon Mar 30 2020 02:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86799 * 120.00161 * 2 1 4 4 H 1.48500 * 109.47320 * 274.51912 * 3 2 1 5 5 H 1.48505 * 109.47281 * 34.51710 * 3 2 1 6 6 H 1.48504 * 109.47415 * 154.51584 * 3 2 1 7 7 C 1.38949 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00212 * 337.25848 * 7 2 1 9 9 N 1.37102 * 119.99999 * 157.25621 * 7 2 1 10 10 C 1.34773 * 120.00457 * 320.81953 * 9 7 2 11 11 O 1.21298 * 119.99373 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00503 * 180.02562 * 10 9 7 13 13 C 1.53953 * 113.57737 * 279.24097 * 12 10 9 14 14 C 1.53072 * 86.72414 * 220.68866 * 13 12 10 15 15 C 1.52913 * 121.17339 * 150.58477 * 14 13 12 16 16 C 1.53945 * 86.78315 * 100.75146 * 15 14 13 17 17 C 1.52903 * 121.07030 * 259.12069 * 14 13 12 18 18 C 1.52907 * 88.06888 * 24.83642 * 14 13 12 19 19 C 1.46506 * 119.99896 * 140.81173 * 9 7 2 20 20 C 1.54890 * 110.91684 * 311.62207 * 19 9 7 21 21 C 1.54263 * 104.19577 * 156.32728 * 20 19 9 22 22 C 1.53874 * 106.59931 * 336.39256 * 21 20 19 23 23 C 1.54265 * 106.60160 * 359.97438 * 22 21 20 24 24 H 0.97005 * 120.00038 * 0.02562 * 1 2 3 25 25 H 1.08992 * 112.82297 * 50.32787 * 12 10 9 26 26 H 1.09006 * 113.66339 * 335.13499 * 13 12 10 27 27 H 1.09000 * 113.66334 * 106.18743 * 13 12 10 28 28 H 1.09001 * 113.66453 * 215.22607 * 15 14 13 29 29 H 1.09001 * 113.66097 * 346.27755 * 15 14 13 30 30 H 1.08997 * 113.58271 * 270.13270 * 16 15 14 31 31 H 1.08994 * 113.64973 * 139.34261 * 16 15 14 32 32 H 1.09001 * 113.66126 * 13.63078 * 17 14 13 33 33 H 1.08993 * 113.66386 * 144.68621 * 17 14 13 34 34 H 1.09007 * 113.66047 * 220.69520 * 18 14 13 35 35 H 1.08997 * 113.66922 * 89.64034 * 18 14 13 36 36 H 1.08999 * 110.67129 * 188.26950 * 19 9 7 37 37 H 1.09003 * 110.48537 * 37.64875 * 20 19 9 38 38 H 1.09000 * 110.48283 * 275.00703 * 20 19 9 39 39 H 1.08994 * 110.03363 * 217.10442 * 21 20 19 40 40 H 1.09000 * 110.03104 * 95.67401 * 21 20 19 41 41 H 1.09002 * 110.03867 * 119.28567 * 22 21 20 42 42 H 1.09006 * 110.02937 * 240.71658 * 22 21 20 43 43 H 1.09001 * 110.49087 * 142.28768 * 23 22 21 44 44 H 1.08997 * 110.49005 * 264.80726 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4001 2.1016 -1.3957 5 1 1.4966 2.6233 0.7934 6 1 3.5902 1.4145 0.6024 7 6 2.0088 -1.2033 0.0005 8 1 1.5318 -2.1021 0.3625 9 7 3.2999 -1.2497 -0.4585 10 6 3.6572 -0.5283 -1.5393 11 8 2.8363 0.1617 -2.1063 12 6 5.0762 -0.5797 -2.0442 13 6 6.0422 0.3264 -1.2594 14 6 6.6650 0.6845 -2.6111 15 6 7.3187 2.0469 -2.8454 16 6 8.6692 1.3376 -2.6382 17 6 7.9703 0.0371 -3.0748 18 6 5.3293 0.3259 -3.2632 19 6 4.2912 -2.0833 0.2261 20 6 4.2535 -1.8437 1.7559 21 6 4.8415 -3.1375 2.3561 22 6 4.6320 -4.2435 1.3070 23 6 3.9235 -3.5835 0.1061 24 1 -0.4850 0.8401 -0.0004 25 1 5.4420 -1.5981 -2.1741 26 1 5.5518 1.1664 -0.7674 27 1 6.7145 -0.2200 -0.5980 28 1 7.1772 2.4322 -3.8551 29 1 7.0874 2.7815 -2.0740 30 1 9.0013 1.3267 -1.6001 31 1 9.4465 1.6674 -3.3274 32 1 8.2598 -0.8338 -2.4867 33 1 8.0121 -0.1425 -4.1490 34 1 5.4329 -0.2210 -4.2005 35 1 4.6382 1.1657 -3.3354 36 1 5.2896 -1.8973 -0.1696 37 1 3.2275 -1.6982 2.0941 38 1 4.8696 -0.9850 2.0228 39 1 4.3184 -3.3930 3.2775 40 1 5.9054 -3.0073 2.5540 41 1 5.5943 -4.6502 0.9958 42 1 4.0071 -5.0358 1.7194 43 1 4.2989 -3.9940 -0.8312 44 1 2.8446 -3.7211 0.1769 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335376977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:33 Heat of formation + Delta-G solvation = 6.861237 kcal Electronic energy + Delta-G solvation = -23207.887147 eV Core-core repulsion = 20126.399425 eV Total energy + Delta-G solvation = -3081.487722 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.55277 -38.75989 -37.01710 -34.37372 -33.50136 -31.74492 -28.19121 -27.10182 -26.33751 -25.68830 -25.39553 -23.69635 -21.39488 -20.06898 -19.81667 -18.96577 -17.78279 -16.96547 -16.19487 -15.48230 -15.29549 -15.05195 -14.89619 -14.11120 -13.86053 -13.41081 -13.06658 -12.78069 -12.63713 -12.58617 -12.17693 -12.08730 -11.88478 -11.81752 -11.52996 -11.10486 -10.85224 -10.82286 -10.77232 -10.63796 -10.55977 -10.11229 -10.05272 -10.00217 -9.90233 -9.85303 -9.78221 -9.65749 -8.42981 -8.28282 -7.48540 -6.12484 -3.82462 3.34807 3.50873 3.71523 3.90462 4.40693 4.53360 4.64499 4.66929 4.74217 4.86881 5.01966 5.08435 5.13996 5.16591 5.29730 5.41225 5.50751 5.64939 5.71774 5.75086 5.75987 5.85562 5.89544 5.93440 5.99786 6.03139 6.04320 6.08779 6.11529 6.16333 6.16639 6.28868 6.31949 6.32825 6.42512 6.45990 6.64308 6.75958 6.80057 6.83313 7.02841 7.93021 8.06627 8.88970 9.03602 9.53888 9.95322 10.92681 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014278 B = 0.008277 C = 0.006044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.641837 B = 3382.166834 C = 4631.907778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.094 3.906 3 Si 0.907 3.093 4 H -0.254 1.254 5 H -0.313 1.313 6 H -0.280 1.280 7 C -0.346 4.346 8 H 0.093 0.907 9 N -0.453 5.453 10 C 0.453 3.547 11 O -0.545 6.545 12 C -0.126 4.126 13 C -0.100 4.100 14 C -0.108 4.108 15 C -0.129 4.129 16 C -0.139 4.139 17 C -0.115 4.115 18 C -0.102 4.102 19 C 0.128 3.872 20 C -0.129 4.129 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.132 4.132 24 H 0.270 0.730 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.535 -2.536 -0.845 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.115 4.115 3 Si 0.739 3.261 4 H -0.179 1.179 5 H -0.243 1.243 6 H -0.206 1.206 7 C -0.471 4.471 8 H 0.111 0.889 9 N -0.173 5.173 10 C 0.243 3.757 11 O -0.427 6.427 12 C -0.148 4.148 13 C -0.138 4.138 14 C -0.108 4.108 15 C -0.166 4.166 16 C -0.176 4.176 17 C -0.152 4.152 18 C -0.139 4.139 19 C 0.023 3.977 20 C -0.167 4.167 21 C -0.159 4.159 22 C -0.158 4.158 23 C -0.170 4.170 24 H 0.080 0.920 25 H 0.117 0.883 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 15.924 -2.127 -1.122 16.105 hybrid contribution 0.341 0.678 0.173 0.779 sum 16.265 -1.449 -0.948 16.357 Atomic orbital electron populations 1.69788 1.06922 1.27990 1.45403 1.25226 0.94761 0.99271 0.92232 0.86482 0.79073 0.82513 0.78063 1.17945 1.24281 1.20605 1.18639 0.86089 0.96216 1.46196 0.88943 1.43649 1.09156 1.40950 1.23558 1.20109 0.89248 0.84720 0.81598 1.90515 1.52019 1.41943 1.58256 1.22593 0.94502 0.99439 0.98231 1.22659 0.96914 0.99441 0.94776 1.22487 0.93816 0.96717 0.97787 1.22750 0.95822 0.96291 1.01776 1.22807 0.96521 0.97023 1.01269 1.22635 0.94646 0.97034 1.00926 1.22632 0.95409 0.99760 0.96115 1.22091 0.92122 0.90761 0.92739 1.22614 1.02936 0.95958 0.95197 1.22069 0.99972 0.95586 0.98289 1.22057 0.99771 0.97812 0.96171 1.22666 1.01946 0.95540 0.96892 0.92028 0.88328 0.89791 0.91186 0.90087 0.91590 0.90420 0.91843 0.91461 0.89989 0.91590 0.88794 0.90438 0.89146 0.92610 0.92193 0.92614 0.92538 0.92252 0.92520 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.79 13.96 55.50 0.77 -26.02 16 2 C 0.09 2.78 4.76 -17.47 -0.08 2.70 16 3 Si 0.91 24.58 24.87 -169.99 -4.23 20.35 16 4 H -0.25 -7.22 6.19 56.52 0.35 -6.87 16 5 H -0.31 -8.41 7.11 56.52 0.40 -8.01 16 6 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.35 -9.62 7.92 -14.93 -0.12 -9.74 16 8 H 0.09 2.69 7.16 -52.49 -0.38 2.31 16 9 N -0.45 -10.74 2.27 -105.60 -0.24 -10.98 16 10 C 0.45 10.82 5.47 -10.99 -0.06 10.76 16 11 O -0.54 -15.32 11.10 5.54 0.06 -15.26 16 12 C -0.13 -2.28 2.71 -90.79 -0.25 -2.53 16 13 C -0.10 -1.61 6.87 -26.20 -0.18 -1.79 16 14 C -0.11 -1.50 1.11 -154.63 -0.17 -1.67 16 15 C -0.13 -1.59 7.84 -26.28 -0.21 -1.80 16 16 C -0.14 -1.44 8.08 -25.75 -0.21 -1.65 16 17 C -0.12 -1.28 7.84 -26.28 -0.21 -1.49 16 18 C -0.10 -1.70 7.16 -26.28 -0.19 -1.89 16 19 C 0.13 2.38 3.11 -65.92 -0.21 2.18 16 20 C -0.13 -2.27 6.31 -25.07 -0.16 -2.43 16 21 C -0.12 -1.68 6.80 -25.61 -0.17 -1.86 16 22 C -0.12 -1.63 6.80 -25.61 -0.17 -1.81 16 23 C -0.13 -2.22 6.41 -25.06 -0.16 -2.38 16 24 H 0.27 7.93 8.31 -40.82 -0.34 7.59 16 25 H 0.10 1.59 7.56 -51.93 -0.39 1.19 16 26 H 0.08 1.55 8.09 -51.93 -0.42 1.13 16 27 H 0.07 0.98 7.85 -51.93 -0.41 0.57 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.82 7.44 -51.93 -0.39 1.44 16 36 H 0.08 1.29 5.34 -51.93 -0.28 1.01 16 37 H 0.09 1.85 6.96 -51.93 -0.36 1.49 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.08 1.53 6.91 -51.93 -0.36 1.17 16 LS Contribution 333.29 15.07 5.02 5.02 Total: -1.00 -32.32 333.29 -8.81 -41.13 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -7.66 Total: 1.14 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -2.54 Total: -15.39 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.53 Total: -37.00 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.06 Total: -15.26 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -4.23 Total: 20.35 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.32 -8.81 -41.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335376977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.992 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds