Wall clock time and date at job start Mon Mar 30 2020 02:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86799 * 120.00161 * 2 1 4 4 H 1.48500 * 109.47320 * 274.51912 * 3 2 1 5 5 H 1.48505 * 109.47281 * 34.51710 * 3 2 1 6 6 H 1.48504 * 109.47415 * 154.51584 * 3 2 1 7 7 C 1.38949 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00212 * 337.25848 * 7 2 1 9 9 N 1.37102 * 119.99999 * 157.25621 * 7 2 1 10 10 C 1.34773 * 120.00457 * 320.81953 * 9 7 2 11 11 O 1.21298 * 119.99373 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00503 * 180.02562 * 10 9 7 13 13 C 1.53953 * 113.57737 * 279.24097 * 12 10 9 14 14 C 1.53072 * 86.72414 * 220.68866 * 13 12 10 15 15 C 1.52913 * 121.17339 * 150.58477 * 14 13 12 16 16 C 1.53945 * 86.78315 * 100.75146 * 15 14 13 17 17 C 1.52903 * 121.07030 * 259.12069 * 14 13 12 18 18 C 1.52907 * 88.06888 * 24.83642 * 14 13 12 19 19 C 1.46506 * 119.99896 * 140.81173 * 9 7 2 20 20 C 1.54890 * 110.91684 * 311.62207 * 19 9 7 21 21 C 1.54263 * 104.19577 * 156.32728 * 20 19 9 22 22 C 1.53874 * 106.59931 * 336.39256 * 21 20 19 23 23 C 1.54265 * 106.60160 * 359.97438 * 22 21 20 24 24 H 0.97005 * 120.00038 * 0.02562 * 1 2 3 25 25 H 1.08992 * 112.82297 * 50.32787 * 12 10 9 26 26 H 1.09006 * 113.66339 * 335.13499 * 13 12 10 27 27 H 1.09000 * 113.66334 * 106.18743 * 13 12 10 28 28 H 1.09001 * 113.66453 * 215.22607 * 15 14 13 29 29 H 1.09001 * 113.66097 * 346.27755 * 15 14 13 30 30 H 1.08997 * 113.58271 * 270.13270 * 16 15 14 31 31 H 1.08994 * 113.64973 * 139.34261 * 16 15 14 32 32 H 1.09001 * 113.66126 * 13.63078 * 17 14 13 33 33 H 1.08993 * 113.66386 * 144.68621 * 17 14 13 34 34 H 1.09007 * 113.66047 * 220.69520 * 18 14 13 35 35 H 1.08997 * 113.66922 * 89.64034 * 18 14 13 36 36 H 1.08999 * 110.67129 * 188.26950 * 19 9 7 37 37 H 1.09003 * 110.48537 * 37.64875 * 20 19 9 38 38 H 1.09000 * 110.48283 * 275.00703 * 20 19 9 39 39 H 1.08994 * 110.03363 * 217.10442 * 21 20 19 40 40 H 1.09000 * 110.03104 * 95.67401 * 21 20 19 41 41 H 1.09002 * 110.03867 * 119.28567 * 22 21 20 42 42 H 1.09006 * 110.02937 * 240.71658 * 22 21 20 43 43 H 1.09001 * 110.49087 * 142.28768 * 23 22 21 44 44 H 1.08997 * 110.49005 * 264.80726 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4001 2.1016 -1.3957 5 1 1.4966 2.6233 0.7934 6 1 3.5902 1.4145 0.6024 7 6 2.0088 -1.2033 0.0005 8 1 1.5318 -2.1021 0.3625 9 7 3.2999 -1.2497 -0.4585 10 6 3.6572 -0.5283 -1.5393 11 8 2.8363 0.1617 -2.1063 12 6 5.0762 -0.5797 -2.0442 13 6 6.0422 0.3264 -1.2594 14 6 6.6650 0.6845 -2.6111 15 6 7.3187 2.0469 -2.8454 16 6 8.6692 1.3376 -2.6382 17 6 7.9703 0.0371 -3.0748 18 6 5.3293 0.3259 -3.2632 19 6 4.2912 -2.0833 0.2261 20 6 4.2535 -1.8437 1.7559 21 6 4.8415 -3.1375 2.3561 22 6 4.6320 -4.2435 1.3070 23 6 3.9235 -3.5835 0.1061 24 1 -0.4850 0.8401 -0.0004 25 1 5.4420 -1.5981 -2.1741 26 1 5.5518 1.1664 -0.7674 27 1 6.7145 -0.2200 -0.5980 28 1 7.1772 2.4322 -3.8551 29 1 7.0874 2.7815 -2.0740 30 1 9.0013 1.3267 -1.6001 31 1 9.4465 1.6674 -3.3274 32 1 8.2598 -0.8338 -2.4867 33 1 8.0121 -0.1425 -4.1490 34 1 5.4329 -0.2210 -4.2005 35 1 4.6382 1.1657 -3.3354 36 1 5.2896 -1.8973 -0.1696 37 1 3.2275 -1.6982 2.0941 38 1 4.8696 -0.9850 2.0228 39 1 4.3184 -3.3930 3.2775 40 1 5.9054 -3.0073 2.5540 41 1 5.5943 -4.6502 0.9958 42 1 4.0071 -5.0358 1.7194 43 1 4.2989 -3.9940 -0.8312 44 1 2.8446 -3.7211 0.1769 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335376977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:33 Heat of formation + Delta-G solvation = -11.938545 kcal Electronic energy + Delta-G solvation = -23208.702367 eV Core-core repulsion = 20126.399425 eV Total energy + Delta-G solvation = -3082.302941 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.91236 -40.26288 -38.55722 -35.72911 -35.28455 -33.84636 -29.49226 -28.66076 -27.93144 -26.74809 -26.57921 -25.24841 -22.73114 -21.56983 -21.03482 -20.75520 -18.90762 -18.68975 -17.88843 -17.22702 -16.47503 -16.38603 -16.11610 -15.79632 -15.44950 -15.26142 -14.73888 -14.20747 -14.14766 -13.83853 -13.70380 -13.49819 -13.29447 -13.03520 -13.01995 -12.75058 -12.46220 -12.21355 -11.98575 -11.96846 -11.88224 -11.77421 -11.65162 -11.43496 -11.14497 -11.11485 -10.97701 -10.87641 -10.67427 -10.16852 -9.49138 -8.41599 -6.08044 1.16839 1.29722 1.46763 1.97086 2.44760 2.70566 3.08045 3.43429 3.52038 3.64821 3.78021 3.84323 3.90428 3.92053 3.98907 4.13501 4.31218 4.43835 4.54813 4.61293 4.66375 4.68840 4.73028 4.79102 4.80145 4.86974 4.93627 4.94132 4.98989 5.03320 5.07357 5.12932 5.16481 5.19297 5.28813 5.36660 5.43144 5.52515 5.57388 5.62105 5.65140 5.73878 5.90022 6.81651 6.96711 7.42450 7.96255 8.67231 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014278 B = 0.008277 C = 0.006044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.641837 B = 3382.166834 C = 4631.907778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.044 3.956 3 Si 0.957 3.043 4 H -0.280 1.280 5 H -0.312 1.312 6 H -0.261 1.261 7 C -0.329 4.329 8 H 0.067 0.933 9 N -0.465 5.465 10 C 0.445 3.555 11 O -0.596 6.596 12 C -0.124 4.124 13 C -0.097 4.097 14 C -0.102 4.102 15 C -0.138 4.138 16 C -0.127 4.127 17 C -0.104 4.104 18 C -0.108 4.108 19 C 0.119 3.881 20 C -0.132 4.132 21 C -0.112 4.112 22 C -0.111 4.111 23 C -0.132 4.132 24 H 0.269 0.731 25 H 0.131 0.869 26 H 0.052 0.948 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.111 0.889 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.510 -3.952 -0.724 21.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.159 4.159 3 Si 0.788 3.212 4 H -0.208 1.208 5 H -0.242 1.242 6 H -0.185 1.185 7 C -0.456 4.456 8 H 0.085 0.915 9 N -0.185 5.185 10 C 0.237 3.763 11 O -0.482 6.482 12 C -0.145 4.145 13 C -0.135 4.135 14 C -0.102 4.102 15 C -0.175 4.175 16 C -0.164 4.164 17 C -0.141 4.141 18 C -0.146 4.146 19 C 0.016 3.984 20 C -0.170 4.170 21 C -0.150 4.150 22 C -0.149 4.149 23 C -0.170 4.170 24 H 0.078 0.922 25 H 0.149 0.851 26 H 0.071 0.929 27 H 0.120 0.880 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.128 0.872 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 20.943 -3.570 -0.965 21.267 hybrid contribution -1.233 1.048 0.065 1.620 sum 19.710 -2.522 -0.900 19.891 Atomic orbital electron populations 1.69873 1.08081 1.28297 1.48807 1.25835 0.95242 1.01813 0.93044 0.85666 0.79096 0.80041 0.76414 1.20771 1.24232 1.18513 1.18516 0.88192 0.94746 1.44159 0.91502 1.43883 1.08753 1.41659 1.24210 1.21268 0.91407 0.82884 0.80761 1.90481 1.54202 1.43908 1.59600 1.22726 0.90654 1.01813 0.99356 1.22613 0.96587 0.98096 0.96191 1.22487 0.93497 0.98869 0.95333 1.22849 0.97390 0.95467 1.01830 1.22775 0.95614 0.95793 1.02237 1.22668 0.91725 0.97776 1.01939 1.22620 0.96795 0.98497 0.96717 1.22482 0.92028 0.90790 0.93087 1.22602 1.01058 0.98670 0.94720 1.22050 1.01619 0.93143 0.98206 1.22042 1.01041 0.97531 0.94288 1.22640 1.00065 0.94746 0.99578 0.92205 0.85144 0.92905 0.87983 0.89618 0.92622 0.89700 0.90005 0.89815 0.88769 0.89966 0.92622 0.87167 0.93205 0.91979 0.91729 0.89431 0.89194 0.91684 0.90941 0.94160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.63 13.96 21.66 0.30 -59.32 16 2 C 0.04 2.74 4.76 84.93 0.40 3.14 16 3 Si 0.96 53.23 24.87 68.60 1.71 54.93 16 4 H -0.28 -16.70 6.19 99.48 0.62 -16.09 16 5 H -0.31 -17.03 7.11 99.48 0.71 -16.32 16 6 H -0.26 -13.34 7.11 99.48 0.71 -12.63 16 7 C -0.33 -19.12 7.92 84.04 0.67 -18.45 16 8 H 0.07 4.15 7.16 -2.91 -0.02 4.13 16 9 N -0.46 -22.23 2.27 -606.39 -1.38 -23.61 16 10 C 0.45 21.37 5.47 87.66 0.48 21.85 16 11 O -0.60 -34.81 11.10 -3.09 -0.03 -34.85 16 12 C -0.12 -4.24 2.71 -10.90 -0.03 -4.27 16 13 C -0.10 -2.84 6.87 30.94 0.21 -2.63 16 14 C -0.10 -2.51 1.11 -52.26 -0.06 -2.57 16 15 C -0.14 -3.04 7.84 30.88 0.24 -2.80 16 16 C -0.13 -2.04 8.08 31.23 0.25 -1.79 16 17 C -0.10 -1.77 7.84 30.88 0.24 -1.52 16 18 C -0.11 -3.50 7.16 30.88 0.22 -3.28 16 19 C 0.12 4.22 3.11 46.29 0.14 4.36 16 20 C -0.13 -4.45 6.31 31.67 0.20 -4.25 16 21 C -0.11 -2.70 6.80 31.32 0.21 -2.49 16 22 C -0.11 -2.58 6.80 31.32 0.21 -2.37 16 23 C -0.13 -4.18 6.41 31.68 0.20 -3.98 16 24 H 0.27 16.73 8.31 -92.70 -0.77 15.96 16 25 H 0.13 3.64 7.56 -2.39 -0.02 3.62 16 26 H 0.05 1.88 8.09 -2.38 -0.02 1.86 16 27 H 0.10 2.32 7.85 -2.39 -0.02 2.30 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 35 H 0.06 2.23 7.44 -2.39 -0.02 2.21 16 36 H 0.11 3.17 5.34 -2.39 -0.01 3.16 16 37 H 0.05 2.08 6.96 -2.39 -0.02 2.06 16 38 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.04 1.58 6.91 -2.39 -0.02 1.56 16 Total: -1.00 -76.78 333.29 5.07 -71.71 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.87 Total: 12.17 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 3.61 Total: -21.03 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -1.07 Total: -82.93 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -0.03 Total: -34.85 kcal Atomic # 14 Polarization: 53.23 SS G_CDS: 1.71 Total: 54.93 kcal Total: -76.78 5.07 -71.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335376977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.775 kcal (2) G-P(sol) polarization free energy of solvation -76.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds