Wall clock time and date at job start Mon Mar 30 2020 02:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99985 * 2 1 4 4 H 1.48500 * 109.47187 * 270.00191 * 3 2 1 5 5 H 1.48496 * 109.47201 * 29.99919 * 3 2 1 6 6 H 1.48500 * 109.47183 * 150.00210 * 3 2 1 7 7 C 1.37881 * 120.00286 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99667 * 0.02562 * 7 2 1 9 9 C 1.50690 * 120.00285 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47439 * 180.02562 * 9 7 2 11 11 C 1.53355 * 109.41856 * 295.12789 * 10 9 7 12 12 C 1.53194 * 109.15397 * 178.67321 * 11 10 9 13 13 N 1.46925 * 108.88925 * 54.57666 * 12 11 10 14 14 C 1.34778 * 120.62692 * 126.34366 * 13 12 11 15 15 O 1.21608 * 120.00024 * 354.88982 * 14 13 12 16 16 C 1.47109 * 119.99900 * 174.88952 * 14 13 12 17 17 C 1.31549 * 118.10281 * 81.32106 * 16 14 13 18 18 C 1.50096 * 123.78622 * 180.39768 * 17 16 14 19 19 C 1.53004 * 110.13806 * 342.83467 * 18 17 16 20 20 C 1.53366 * 108.51058 * 49.74677 * 19 18 17 21 21 C 1.50098 * 118.09881 * 261.05856 * 16 14 13 22 22 C 1.46921 * 118.74272 * 306.32137 * 13 12 11 23 23 C 1.53039 * 109.46247 * 175.00433 * 10 9 7 24 24 H 0.97002 * 120.00210 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47388 * 59.99983 * 9 7 2 26 26 H 1.09008 * 109.47515 * 300.00614 * 9 7 2 27 27 H 1.08999 * 109.46032 * 55.02574 * 10 9 7 28 28 H 1.09000 * 109.68256 * 58.70476 * 11 10 9 29 29 H 1.09006 * 109.47499 * 298.51677 * 11 10 9 30 30 H 1.08997 * 109.58108 * 294.72174 * 12 11 10 31 31 H 1.08993 * 109.58705 * 174.43405 * 12 11 10 32 32 H 1.08002 * 118.10786 * 0.37871 * 17 16 14 33 33 H 1.08999 * 109.35666 * 103.03926 * 18 17 16 34 34 H 1.09000 * 109.36124 * 222.62987 * 18 17 16 35 35 H 1.09005 * 109.63413 * 169.45070 * 19 18 17 36 36 H 1.09002 * 109.63171 * 290.04119 * 19 18 17 37 37 H 1.09005 * 109.63088 * 51.67289 * 20 19 18 38 38 H 1.09001 * 109.63414 * 172.26241 * 20 19 18 39 39 H 1.09000 * 109.35798 * 283.05032 * 21 16 14 40 40 H 1.08996 * 109.36135 * 42.65063 * 21 16 14 41 41 H 1.09004 * 109.59067 * 173.39333 * 22 13 12 42 42 H 1.09002 * 109.58793 * 293.68064 * 22 13 12 43 43 H 1.09002 * 109.50394 * 61.43301 * 23 10 9 44 44 H 1.08998 * 109.52146 * 301.34901 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 3.6130 -3.3216 1.3098 12 6 4.0978 -4.7747 1.2894 13 7 5.5427 -4.7904 1.0235 14 6 6.3859 -5.4406 1.8497 15 8 5.9663 -5.9425 2.8749 16 6 7.8139 -5.5432 1.5114 17 6 8.5906 -4.5172 1.7842 18 6 10.0612 -4.4811 1.4862 19 6 10.5836 -5.8978 1.2393 20 6 9.6648 -6.5851 0.2217 21 6 8.3013 -6.8149 0.8805 22 6 6.0508 -4.0843 -0.1605 23 6 5.5467 -2.6380 -0.1262 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6796 0.8895 26 1 3.8746 -0.6807 -0.8905 27 1 3.5869 -3.1754 -0.8418 28 1 2.5280 -3.3015 1.4118 29 1 4.0676 -2.7981 2.1510 30 1 3.5759 -5.3229 0.5052 31 1 3.8989 -5.2398 2.2549 32 1 8.1443 -3.6506 2.2493 33 1 10.2352 -3.8721 0.5990 34 1 10.5908 -4.0430 2.3322 35 1 11.5980 -5.8503 0.8431 36 1 10.5784 -6.4581 2.1743 37 1 9.5489 -5.9485 -0.6556 38 1 10.0947 -7.5428 -0.0716 39 1 8.3913 -7.5863 1.6453 40 1 7.5868 -7.1401 0.1244 41 1 7.1408 -4.0916 -0.1506 42 1 5.6903 -4.5778 -1.0630 43 1 5.9831 -2.1209 0.7284 44 1 5.8366 -2.1298 -1.0458 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335500298.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:41 Heat of formation + Delta-G solvation = -51.411655 kcal Electronic energy + Delta-G solvation = -22059.130817 eV Core-core repulsion = 18975.116193 eV Total energy + Delta-G solvation = -3084.014624 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.39197 -38.22743 -37.16937 -34.06578 -32.26627 -31.67594 -31.04073 -30.50106 -28.52000 -24.96771 -23.86098 -23.16349 -22.62281 -21.53104 -20.14671 -19.13770 -17.83032 -17.17753 -16.64477 -16.18282 -15.09108 -14.98586 -14.38733 -14.34894 -14.03672 -13.86285 -13.63454 -13.26629 -13.23136 -12.97475 -12.71778 -12.59947 -12.55712 -12.31576 -12.04928 -11.49371 -11.17590 -11.11065 -11.10345 -10.87485 -10.71662 -10.66288 -10.37204 -9.81981 -9.75095 -9.64087 -9.51033 -9.12232 -8.99449 -8.54189 -8.41300 -6.04824 -4.02276 1.71448 2.66455 3.18577 3.29122 3.37278 3.40404 4.32099 4.44380 4.47064 4.61429 4.80623 4.99822 5.03486 5.05772 5.25519 5.26721 5.27338 5.29046 5.36920 5.51121 5.54251 5.60053 5.61917 5.65149 5.72976 5.76910 5.83185 5.89756 6.02347 6.02799 6.22064 6.24472 6.31751 6.42744 6.52037 6.57630 6.82208 6.86581 7.00607 7.22414 7.42157 7.53897 7.79103 8.23767 8.53184 9.00016 9.58093 11.08479 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029592 B = 0.003906 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.986382 B = 7165.848926 C = 7663.934677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.072 4.072 11 C -0.118 4.118 12 C 0.107 3.893 13 N -0.600 5.600 14 C 0.549 3.451 15 O -0.546 6.546 16 C -0.146 4.146 17 C -0.117 4.117 18 C -0.090 4.090 19 C -0.122 4.122 20 C -0.118 4.118 21 C -0.072 4.072 22 C 0.107 3.893 23 C -0.132 4.132 24 H 0.262 0.738 25 H 0.014 0.986 26 H 0.011 0.989 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.991 -11.076 -0.786 23.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.092 0.908 9 C -0.046 4.046 10 C -0.091 4.091 11 C -0.156 4.156 12 C -0.015 4.015 13 N -0.332 5.332 14 C 0.337 3.663 15 O -0.424 6.424 16 C -0.148 4.148 17 C -0.136 4.136 18 C -0.126 4.126 19 C -0.160 4.160 20 C -0.155 4.155 21 C -0.109 4.109 22 C -0.016 4.016 23 C -0.170 4.170 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.029 0.971 27 H 0.083 0.917 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.127 0.873 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 20.581 -11.220 -0.242 23.442 hybrid contribution 0.178 1.146 -0.027 1.160 sum 20.759 -10.074 -0.269 23.076 Atomic orbital electron populations 1.69911 1.06279 1.26824 1.51286 1.25031 0.94694 0.99112 0.94693 0.86806 0.80372 0.83840 0.78407 1.20383 1.21476 1.19118 1.21137 0.89419 0.94357 1.50502 0.90838 1.19611 0.97234 0.91616 0.96140 1.21066 0.91982 0.99074 0.96984 1.21948 1.02670 0.92761 0.98229 1.21802 0.78630 0.98882 1.02150 1.48202 1.07844 1.51281 1.25887 1.18731 0.86493 0.77987 0.83076 1.90782 1.78176 1.48408 1.25074 1.20742 0.93050 0.97719 1.03338 1.22532 0.95774 0.97255 0.98053 1.20481 0.92283 0.97719 1.02157 1.21629 0.98791 0.95821 0.99758 1.21624 0.94655 1.00945 0.98293 1.20289 0.96955 0.94129 0.99556 1.21815 0.99188 0.93276 0.87288 1.22056 0.98281 0.94567 1.02115 0.92791 0.96721 0.97085 0.91720 0.89208 0.92474 0.91606 0.89568 0.87290 0.90121 0.90568 0.91477 0.91548 0.91380 0.91294 0.90214 0.90839 0.90128 0.91489 0.92097 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -14.21 8.94 -34.44 -0.31 -14.52 16 8 H 0.07 2.16 7.31 -52.48 -0.38 1.78 16 9 C -0.01 -0.20 3.52 -27.89 -0.10 -0.30 16 10 C -0.07 -1.34 2.10 -90.42 -0.19 -1.53 16 11 C -0.12 -2.15 5.21 -26.45 -0.14 -2.29 16 12 C 0.11 1.71 6.43 -3.71 -0.02 1.69 16 13 N -0.60 -8.88 2.97 -174.16 -0.52 -9.39 16 14 C 0.55 8.49 6.83 -12.66 -0.09 8.41 16 15 O -0.55 -10.49 16.52 5.27 0.09 -10.41 16 16 C -0.15 -1.72 4.05 -103.17 -0.42 -2.14 16 17 C -0.12 -1.23 8.46 -36.45 -0.31 -1.54 16 18 C -0.09 -0.68 6.11 -28.17 -0.17 -0.85 16 19 C -0.12 -0.85 5.99 -26.54 -0.16 -1.01 16 20 C -0.12 -0.84 6.01 -26.45 -0.16 -1.00 16 21 C -0.07 -0.69 5.79 -28.09 -0.16 -0.85 16 22 C 0.11 1.35 6.29 -3.71 -0.02 1.33 16 23 C -0.13 -1.95 5.36 -26.61 -0.14 -2.10 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 26 H 0.01 0.25 7.57 -51.92 -0.39 -0.14 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.09 1.81 6.93 -51.93 -0.36 1.45 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.09 1.45 6.99 -51.93 -0.36 1.09 16 32 H 0.11 1.24 7.95 -52.49 -0.42 0.82 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 37 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.87 5.66 -51.93 -0.29 0.57 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 340.09 15.07 5.13 5.13 Total: -1.00 -32.02 340.09 -9.36 -41.37 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -7.67 Total: -1.83 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -2.49 Total: -14.91 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.26 Total: -36.24 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.02 -9.36 -41.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335500298.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.037 kcal (2) G-P(sol) polarization free energy of solvation -32.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds