Wall clock time and date at job start Mon Mar 30 2020 02:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99985 * 2 1 4 4 H 1.48500 * 109.47187 * 270.00191 * 3 2 1 5 5 H 1.48496 * 109.47201 * 29.99919 * 3 2 1 6 6 H 1.48500 * 109.47183 * 150.00210 * 3 2 1 7 7 C 1.37881 * 120.00286 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99667 * 0.02562 * 7 2 1 9 9 C 1.50690 * 120.00285 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47439 * 180.02562 * 9 7 2 11 11 C 1.53355 * 109.41856 * 295.12789 * 10 9 7 12 12 C 1.53194 * 109.15397 * 178.67321 * 11 10 9 13 13 N 1.46925 * 108.88925 * 54.57666 * 12 11 10 14 14 C 1.34778 * 120.62692 * 126.34366 * 13 12 11 15 15 O 1.21608 * 120.00024 * 354.88982 * 14 13 12 16 16 C 1.47109 * 119.99900 * 174.88952 * 14 13 12 17 17 C 1.31549 * 118.10281 * 81.32106 * 16 14 13 18 18 C 1.50096 * 123.78622 * 180.39768 * 17 16 14 19 19 C 1.53004 * 110.13806 * 342.83467 * 18 17 16 20 20 C 1.53366 * 108.51058 * 49.74677 * 19 18 17 21 21 C 1.50098 * 118.09881 * 261.05856 * 16 14 13 22 22 C 1.46921 * 118.74272 * 306.32137 * 13 12 11 23 23 C 1.53039 * 109.46247 * 175.00433 * 10 9 7 24 24 H 0.97002 * 120.00210 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47388 * 59.99983 * 9 7 2 26 26 H 1.09008 * 109.47515 * 300.00614 * 9 7 2 27 27 H 1.08999 * 109.46032 * 55.02574 * 10 9 7 28 28 H 1.09000 * 109.68256 * 58.70476 * 11 10 9 29 29 H 1.09006 * 109.47499 * 298.51677 * 11 10 9 30 30 H 1.08997 * 109.58108 * 294.72174 * 12 11 10 31 31 H 1.08993 * 109.58705 * 174.43405 * 12 11 10 32 32 H 1.08002 * 118.10786 * 0.37871 * 17 16 14 33 33 H 1.08999 * 109.35666 * 103.03926 * 18 17 16 34 34 H 1.09000 * 109.36124 * 222.62987 * 18 17 16 35 35 H 1.09005 * 109.63413 * 169.45070 * 19 18 17 36 36 H 1.09002 * 109.63171 * 290.04119 * 19 18 17 37 37 H 1.09005 * 109.63088 * 51.67289 * 20 19 18 38 38 H 1.09001 * 109.63414 * 172.26241 * 20 19 18 39 39 H 1.09000 * 109.35798 * 283.05032 * 21 16 14 40 40 H 1.08996 * 109.36135 * 42.65063 * 21 16 14 41 41 H 1.09004 * 109.59067 * 173.39333 * 22 13 12 42 42 H 1.09002 * 109.58793 * 293.68064 * 22 13 12 43 43 H 1.09002 * 109.50394 * 61.43301 * 23 10 9 44 44 H 1.08998 * 109.52146 * 301.34901 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 3.6130 -3.3216 1.3098 12 6 4.0978 -4.7747 1.2894 13 7 5.5427 -4.7904 1.0235 14 6 6.3859 -5.4406 1.8497 15 8 5.9663 -5.9425 2.8749 16 6 7.8139 -5.5432 1.5114 17 6 8.5906 -4.5172 1.7842 18 6 10.0612 -4.4811 1.4862 19 6 10.5836 -5.8978 1.2393 20 6 9.6648 -6.5851 0.2217 21 6 8.3013 -6.8149 0.8805 22 6 6.0508 -4.0843 -0.1605 23 6 5.5467 -2.6380 -0.1262 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6796 0.8895 26 1 3.8746 -0.6807 -0.8905 27 1 3.5869 -3.1754 -0.8418 28 1 2.5280 -3.3015 1.4118 29 1 4.0676 -2.7981 2.1510 30 1 3.5759 -5.3229 0.5052 31 1 3.8989 -5.2398 2.2549 32 1 8.1443 -3.6506 2.2493 33 1 10.2352 -3.8721 0.5990 34 1 10.5908 -4.0430 2.3322 35 1 11.5980 -5.8503 0.8431 36 1 10.5784 -6.4581 2.1743 37 1 9.5489 -5.9485 -0.6556 38 1 10.0947 -7.5428 -0.0716 39 1 8.3913 -7.5863 1.6453 40 1 7.5868 -7.1401 0.1244 41 1 7.1408 -4.0916 -0.1506 42 1 5.6903 -4.5778 -1.0630 43 1 5.9831 -2.1209 0.7284 44 1 5.8366 -2.1298 -1.0458 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335500298.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:40 Heat of formation + Delta-G solvation = -69.467636 kcal Electronic energy + Delta-G solvation = -22059.913783 eV Core-core repulsion = 18975.116193 eV Total energy + Delta-G solvation = -3084.797590 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.53535 -39.19985 -38.37739 -35.71062 -34.11639 -32.73679 -31.69228 -31.64516 -30.22481 -26.47663 -24.90386 -24.06197 -23.74684 -22.89293 -21.46479 -20.39173 -19.05511 -18.57490 -18.09746 -17.32128 -16.38485 -16.20954 -15.83472 -15.40106 -15.15291 -15.04882 -14.72037 -14.58881 -14.43317 -14.16973 -14.12635 -13.72725 -13.49219 -13.31523 -13.19392 -13.11233 -12.86809 -12.40894 -12.19626 -12.05428 -11.85867 -11.72888 -11.62902 -11.35890 -11.32360 -11.16552 -11.01277 -10.73948 -10.67411 -9.88522 -9.69144 -8.26267 -6.28559 0.85478 1.35116 1.37744 1.48423 1.48795 2.03763 2.37370 3.09283 3.41077 3.78837 3.87233 3.96551 4.01150 4.08718 4.14798 4.21745 4.34112 4.35312 4.39309 4.50477 4.62161 4.65352 4.68292 4.77002 4.83120 4.91156 4.93932 5.01543 5.05283 5.07087 5.16730 5.18914 5.19425 5.26798 5.29878 5.40967 5.50294 5.51031 5.56709 5.69242 5.73400 5.74468 6.33025 6.36684 6.79391 7.03797 7.35340 8.90372 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029592 B = 0.003906 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.986382 B = 7165.848926 C = 7663.934677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.947 3.053 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.249 1.249 7 C -0.519 4.519 8 H 0.036 0.964 9 C -0.006 4.006 10 C -0.069 4.069 11 C -0.111 4.111 12 C 0.115 3.885 13 N -0.600 5.600 14 C 0.545 3.455 15 O -0.594 6.594 16 C -0.161 4.161 17 C -0.103 4.103 18 C -0.089 4.089 19 C -0.122 4.122 20 C -0.112 4.112 21 C -0.070 4.070 22 C 0.111 3.889 23 C -0.124 4.124 24 H 0.264 0.736 25 H 0.011 0.989 26 H 0.022 0.978 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.084 0.916 43 H 0.058 0.942 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.901 -10.567 -2.207 27.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.196 4.196 3 Si 0.771 3.229 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.173 1.173 7 C -0.557 4.557 8 H 0.054 0.946 9 C -0.044 4.044 10 C -0.088 4.088 11 C -0.149 4.149 12 C -0.008 4.008 13 N -0.331 5.331 14 C 0.335 3.665 15 O -0.475 6.475 16 C -0.164 4.164 17 C -0.122 4.122 18 C -0.125 4.125 19 C -0.160 4.160 20 C -0.149 4.149 21 C -0.108 4.108 22 C -0.011 4.011 23 C -0.162 4.162 24 H 0.073 0.927 25 H 0.029 0.971 26 H 0.041 0.959 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.126 0.874 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 24.521 -10.715 -1.690 26.813 hybrid contribution -1.125 0.949 0.458 1.541 sum 23.396 -9.766 -1.232 25.383 Atomic orbital electron populations 1.70074 1.08293 1.27900 1.53286 1.26005 0.95539 1.03433 0.94579 0.85699 0.79402 0.78594 0.79180 1.18926 1.21553 1.17272 1.21493 0.92070 0.92945 1.49242 0.94555 1.19575 0.93929 0.94640 0.96208 1.20987 0.95083 0.96170 0.96570 1.21794 1.00664 0.94407 0.98041 1.21571 0.80125 0.97064 1.02001 1.48301 1.07036 1.51258 1.26510 1.19441 0.88034 0.76875 0.82161 1.90752 1.79311 1.50362 1.27105 1.20688 0.90716 0.99447 1.05552 1.22758 0.97390 0.96061 0.96014 1.20582 0.89862 0.98713 1.03358 1.21652 0.99802 0.95056 0.99445 1.21626 0.92978 1.02013 0.98315 1.20324 0.98512 0.92641 0.99284 1.21961 1.00753 0.91578 0.86804 1.21976 0.94689 0.96390 1.03160 0.92750 0.97060 0.95938 0.92083 0.92303 0.93591 0.90413 0.90927 0.88474 0.88162 0.89606 0.89398 0.92453 0.90425 0.89893 0.91147 0.90916 0.87403 0.89796 0.92335 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.11 13.96 21.45 0.30 -59.81 16 2 C 0.00 0.03 5.47 84.66 0.46 0.49 16 3 Si 0.95 44.19 27.47 68.60 1.88 46.08 16 4 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 6 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 7 C -0.52 -29.32 8.94 25.60 0.23 -29.09 16 8 H 0.04 2.25 7.31 -2.91 -0.02 2.23 16 9 C -0.01 -0.28 3.52 29.84 0.10 -0.17 16 10 C -0.07 -2.53 2.10 -10.66 -0.02 -2.55 16 11 C -0.11 -4.16 5.21 30.78 0.16 -4.00 16 12 C 0.11 3.74 6.43 86.36 0.56 4.30 16 13 N -0.60 -17.17 2.97 -823.17 -2.45 -19.62 16 14 C 0.54 16.60 6.83 86.57 0.59 17.19 16 15 O -0.59 -23.37 16.52 -4.06 -0.07 -23.43 16 16 C -0.16 -3.53 4.05 -18.28 -0.07 -3.61 16 17 C -0.10 -1.90 8.46 24.94 0.21 -1.69 16 18 C -0.09 -1.01 6.11 29.66 0.18 -0.83 16 19 C -0.12 -1.24 5.99 30.72 0.18 -1.06 16 20 C -0.11 -1.20 6.01 30.77 0.18 -1.02 16 21 C -0.07 -1.20 5.79 29.72 0.17 -1.03 16 22 C 0.11 2.47 6.29 86.37 0.54 3.01 16 23 C -0.12 -3.33 5.36 30.67 0.16 -3.16 16 24 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 25 H 0.01 0.51 7.20 -2.38 -0.02 0.49 16 26 H 0.02 0.97 7.57 -2.38 -0.02 0.95 16 27 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.06 2.54 6.93 -2.39 -0.02 2.52 16 29 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.07 2.57 6.99 -2.39 -0.02 2.55 16 32 H 0.10 2.02 7.95 -2.91 -0.02 2.00 16 33 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.06 0.70 8.12 -2.39 -0.02 0.68 16 37 H 0.08 0.72 8.12 -2.38 -0.02 0.70 16 38 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.11 1.89 5.66 -2.39 -0.01 1.87 16 42 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -72.22 340.09 4.21 -68.00 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.90 Total: 11.99 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: 3.65 Total: -23.21 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -2.15 Total: -79.43 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.07 Total: -23.43 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.08 kcal Total: -72.22 4.21 -68.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335500298.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.464 kcal (2) G-P(sol) polarization free energy of solvation -72.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds