Wall clock time and date at job start Mon Mar 30 2020 02:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00517 * 2 1 4 4 H 1.48504 * 109.47242 * 270.00449 * 3 2 1 5 5 H 1.48507 * 109.46986 * 30.00170 * 3 2 1 6 6 H 1.48495 * 109.47337 * 149.99838 * 3 2 1 7 7 C 1.37881 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00219 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00151 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47139 * 179.97438 * 9 7 2 11 11 C 1.53040 * 109.45751 * 175.00220 * 10 9 7 12 12 C 1.53196 * 109.33744 * 181.40209 * 11 10 9 13 13 N 1.46926 * 108.77883 * 305.35084 * 12 11 10 14 14 C 1.34770 * 120.62990 * 233.58640 * 13 12 11 15 15 O 1.21274 * 120.00503 * 354.74888 * 14 13 12 16 16 C 1.50702 * 119.99581 * 174.75069 * 14 13 12 17 17 C 1.52998 * 119.29849 * 293.94043 * 16 14 13 18 18 C 1.53000 * 60.38165 * 248.69804 * 17 16 14 19 19 H 1.08995 * 119.30243 * 111.30758 * 18 17 16 20 20 C 1.54276 * 118.19897 * 266.38808 * 18 17 16 21 21 C 1.54891 * 104.19584 * 87.78277 * 20 18 17 22 22 C 1.54266 * 117.41358 * 88.28847 * 16 14 13 23 23 C 1.46935 * 118.73705 * 53.60608 * 13 12 11 24 24 C 1.53099 * 109.50839 * 295.05620 * 10 9 7 25 25 H 0.97005 * 119.99771 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46845 * 60.00217 * 9 7 2 27 27 H 1.08994 * 109.47248 * 300.00382 * 9 7 2 28 28 H 1.09000 * 109.45075 * 55.03900 * 10 9 7 29 29 H 1.08998 * 109.49784 * 61.43867 * 11 10 9 30 30 H 1.08998 * 109.49918 * 301.37078 * 11 10 9 31 31 H 1.08998 * 109.58649 * 65.13795 * 12 11 10 32 32 H 1.09003 * 109.58793 * 185.55954 * 12 11 10 33 33 H 1.08996 * 117.46126 * 356.29468 * 17 16 14 34 34 H 1.09001 * 117.46192 * 141.10143 * 17 16 14 35 35 H 1.08995 * 110.48449 * 206.46648 * 20 18 17 36 36 H 1.09004 * 110.48216 * 328.97059 * 20 18 17 37 37 H 1.08995 * 110.75354 * 80.37438 * 21 20 18 38 38 H 1.08999 * 110.75079 * 203.55659 * 21 20 18 39 39 H 1.09008 * 110.48290 * 235.04176 * 22 16 14 40 40 H 1.08994 * 110.48698 * 357.68342 * 22 16 14 41 41 H 1.08996 * 109.58227 * 66.18149 * 23 13 12 42 42 H 1.08997 * 109.58279 * 186.45984 * 23 13 12 43 43 H 1.09010 * 109.48734 * 58.67073 * 24 10 9 44 44 H 1.09003 * 109.51574 * 298.60718 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5466 -2.6382 -0.1273 12 6 6.0512 -4.0843 -0.1621 13 7 5.5437 -4.7910 1.0218 14 6 6.3874 -5.4411 1.8475 15 8 7.5640 -5.5277 1.5669 16 6 5.8685 -6.0605 3.1196 17 6 5.3305 -5.1540 4.2285 18 6 6.6350 -5.9232 4.4469 19 1 7.5748 -5.3742 4.5045 20 6 6.5626 -7.2987 5.1418 21 6 6.3182 -8.2973 3.9832 22 6 5.3407 -7.5079 3.0410 23 6 4.0987 -4.7759 1.2881 24 6 3.6161 -3.3221 1.3066 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6806 0.8889 27 1 3.8745 -0.6801 -0.8910 28 1 3.5868 -3.1754 -0.8430 29 1 5.9829 -2.1212 0.7273 30 1 5.8360 -2.1296 -1.0469 31 1 5.6886 -4.5762 -1.0647 32 1 7.1412 -4.0913 -0.1525 33 1 5.4016 -4.0771 4.0762 34 1 4.4494 -5.4941 4.7726 35 1 7.5031 -7.5215 5.6455 36 1 5.7355 -7.3245 5.8513 37 1 7.2509 -8.5273 3.4684 38 1 5.8471 -9.2085 4.3517 39 1 4.3207 -7.5632 3.4214 40 1 5.3871 -7.8758 2.0161 41 1 3.5770 -5.3242 0.5037 42 1 3.9003 -5.2415 2.2534 43 1 2.5309 -3.3003 1.4074 44 1 4.0702 -2.7987 2.1481 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335500431.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:24 Heat of formation + Delta-G solvation = -29.898209 kcal Electronic energy + Delta-G solvation = -22296.388606 eV Core-core repulsion = 19213.306876 eV Total energy + Delta-G solvation = -3083.081731 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.73572 -38.68469 -37.12715 -34.03636 -32.24540 -31.77131 -30.79517 -28.90968 -28.28462 -25.02505 -23.25953 -22.91596 -22.24958 -20.85822 -20.48626 -19.41484 -18.27559 -16.95364 -16.71562 -16.06318 -15.44513 -14.84243 -14.49483 -14.32671 -13.84604 -13.54698 -13.43432 -13.23070 -13.19558 -13.06072 -12.75346 -12.31548 -12.09156 -11.92568 -11.47286 -11.37498 -11.22638 -11.16787 -11.12270 -10.87882 -10.68031 -10.54206 -10.32792 -9.90983 -9.85383 -9.72378 -9.52555 -9.40745 -9.08172 -8.55481 -8.39314 -6.06539 -4.03895 2.67522 3.05644 3.28833 3.36867 3.40294 3.40442 4.24571 4.43449 4.47170 4.50840 4.65036 4.96016 5.14236 5.16687 5.22084 5.27366 5.30955 5.32914 5.42339 5.46508 5.48714 5.60809 5.62666 5.63286 5.69570 5.78053 5.84339 5.87882 5.93950 6.01680 6.02959 6.15500 6.26976 6.30723 6.42172 6.62882 6.79524 6.84889 6.95847 7.23251 7.42009 7.57852 7.77874 8.29719 8.51379 8.97962 9.56800 11.06669 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028131 B = 0.004095 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.096454 B = 6836.486745 C = 7176.729432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.072 4.072 11 C -0.132 4.132 12 C 0.112 3.888 13 N -0.600 5.600 14 C 0.556 3.444 15 O -0.550 6.550 16 C -0.169 4.169 17 C -0.135 4.135 18 C -0.132 4.132 19 H 0.113 0.887 20 C -0.094 4.094 21 C -0.121 4.121 22 C -0.078 4.078 23 C 0.105 3.895 24 C -0.119 4.119 25 H 0.262 0.738 26 H 0.015 0.985 27 H 0.011 0.989 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.903 -14.123 7.923 19.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.092 0.908 9 C -0.047 4.047 10 C -0.091 4.091 11 C -0.170 4.170 12 C -0.010 4.010 13 N -0.332 5.332 14 C 0.343 3.657 15 O -0.428 6.428 16 C -0.172 4.172 17 C -0.172 4.172 18 C -0.150 4.150 19 H 0.131 0.869 20 C -0.132 4.132 21 C -0.158 4.158 22 C -0.116 4.116 23 C -0.018 4.018 24 C -0.157 4.157 25 H 0.072 0.928 26 H 0.033 0.967 27 H 0.029 0.971 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.372 -14.052 7.751 19.669 hybrid contribution 0.240 1.161 -0.174 1.198 sum 11.612 -12.891 7.578 18.932 Atomic orbital electron populations 1.69911 1.06266 1.26825 1.51316 1.25019 0.94681 0.99089 0.94666 0.86822 0.80375 0.83845 0.78475 1.20382 1.21478 1.19102 1.21132 0.89396 0.94317 1.50527 0.90843 1.19616 0.97190 0.91650 0.96199 1.21016 0.92127 0.99028 0.96914 1.22062 0.98011 0.94796 1.02116 1.21650 0.99892 0.92657 0.86802 1.48125 1.08030 1.51310 1.25753 1.19396 0.85350 0.77541 0.83386 1.90647 1.16950 1.60104 1.75056 1.22247 1.07720 0.97878 0.89391 1.23245 0.97228 0.98154 0.98527 1.23377 0.96932 0.98671 0.96069 0.86901 1.21951 1.02045 0.92040 0.97152 1.23025 0.99484 0.97659 0.95654 1.22224 0.98863 0.90068 1.00401 1.21944 0.79080 0.99100 1.01631 1.21906 1.02654 0.92715 0.98425 0.92796 0.96714 0.97069 0.91753 0.92180 0.91130 0.91705 0.89791 0.87839 0.87932 0.91024 0.91058 0.91074 0.91164 0.90502 0.90978 0.91605 0.89827 0.89229 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 2 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -13.96 8.94 -34.44 -0.31 -14.27 16 8 H 0.07 2.11 7.31 -52.49 -0.38 1.73 16 9 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 10 C -0.07 -1.33 2.10 -90.55 -0.19 -1.52 16 11 C -0.13 -2.10 5.36 -26.61 -0.14 -2.24 16 12 C 0.11 1.66 6.42 -3.71 -0.02 1.63 16 13 N -0.60 -8.80 2.97 -172.76 -0.51 -9.32 16 14 C 0.56 8.48 7.08 -10.99 -0.08 8.40 16 15 O -0.55 -10.16 16.51 5.56 0.09 -10.06 16 16 C -0.17 -2.01 1.09 -154.54 -0.17 -2.18 16 17 C -0.13 -1.42 8.59 -26.73 -0.23 -1.64 16 18 C -0.13 -1.42 6.79 -89.49 -0.61 -2.02 16 19 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 20 C -0.09 -0.80 6.63 -25.07 -0.17 -0.97 16 21 C -0.12 -1.04 6.96 -23.54 -0.16 -1.21 16 22 C -0.08 -0.76 6.53 -23.88 -0.16 -0.92 16 23 C 0.10 1.43 6.25 -3.71 -0.02 1.41 16 24 C -0.12 -1.98 5.19 -26.58 -0.14 -2.12 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 27 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.28 7.04 -51.93 -0.37 0.92 16 33 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.65 8.14 -51.92 -0.42 0.22 16 40 H 0.07 0.75 8.00 -51.93 -0.42 0.34 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 1.00 5.37 -51.93 -0.28 0.72 16 43 H 0.09 1.65 6.92 -51.92 -0.36 1.29 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 340.27 15.07 5.13 5.13 Total: -1.00 -31.24 340.27 -9.43 -40.68 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -7.65 Total: -0.57 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -2.59 Total: -16.17 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.26 Total: -35.77 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.24 -9.43 -40.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335500431.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.777 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds