Wall clock time and date at job start Mon Mar 30 2020 01:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28442 * 125.18962 * 2 1 4 4 C 1.30865 * 110.92496 * 180.02562 * 3 2 1 5 5 C 1.39670 * 107.86486 * 359.76832 * 4 3 2 6 6 C 1.36608 * 125.18917 * 180.02562 * 2 1 3 7 7 C 1.47158 * 126.88554 * 359.94488 * 6 2 1 8 8 O 1.21622 * 120.00050 * 333.56476 * 7 6 2 9 9 N 1.34781 * 119.99732 * 153.55775 * 7 6 2 10 10 C 1.46918 * 120.63373 * 351.47643 * 9 7 6 11 11 C 1.52755 * 109.01185 * 233.58104 * 10 9 7 12 12 C 1.53045 * 109.38441 * 305.59228 * 11 10 9 13 13 C 1.52992 * 109.46043 * 181.25741 * 12 11 10 14 14 C 1.50709 * 109.47424 * 64.93080 * 13 12 11 15 15 H 1.08003 * 119.99421 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00128 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99774 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00188 * 359.97438 * 16 14 13 19 19 H 1.48492 * 109.47386 * 90.00154 * 18 16 14 20 20 H 1.48497 * 109.47068 * 210.00292 * 18 16 14 21 21 H 1.48504 * 109.46782 * 330.00187 * 18 16 14 22 22 C 1.53041 * 109.53781 * 61.23364 * 12 11 10 23 23 C 1.46932 * 120.62601 * 171.75587 * 9 7 6 24 24 H 1.09005 * 109.47101 * 264.50892 * 1 2 3 25 25 H 1.08997 * 109.47162 * 24.51612 * 1 2 3 26 26 H 1.09003 * 109.47057 * 144.51338 * 1 2 3 27 27 H 1.08005 * 126.06509 * 180.02562 * 4 3 2 28 28 H 1.08006 * 127.32060 * 180.23799 * 5 4 3 29 29 H 1.09004 * 109.58670 * 353.41774 * 10 9 7 30 30 H 1.09000 * 109.58667 * 113.83916 * 10 9 7 31 31 H 1.08991 * 109.57030 * 185.54996 * 11 10 9 32 32 H 1.09008 * 109.36063 * 65.49795 * 11 10 9 33 33 H 1.09001 * 109.45208 * 301.21793 * 12 11 10 34 34 H 1.09003 * 109.47514 * 184.92825 * 13 12 11 35 35 H 1.09001 * 109.47666 * 304.93052 * 13 12 11 36 36 H 0.96997 * 119.99742 * 179.97438 * 17 16 14 37 37 H 1.08995 * 109.49390 * 178.68349 * 22 12 11 38 38 H 1.08998 * 109.52196 * 58.60697 * 22 12 11 39 39 H 1.09000 * 109.58268 * 246.16178 * 23 9 7 40 40 H 1.09006 * 109.58606 * 6.43920 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7272 -0.0005 5 6 3.5612 -0.6667 0.0044 6 6 2.2522 -1.1164 -0.0005 7 6 1.7993 -2.5166 0.0000 8 8 0.7152 -2.8049 0.4698 9 7 2.5859 -3.4794 -0.5203 10 6 3.8088 -3.1307 -1.2561 11 6 3.7750 -3.8058 -2.6259 12 6 3.5567 -5.3098 -2.4458 13 6 3.5538 -5.9921 -3.8151 14 6 4.9158 -5.8581 -4.4462 15 1 5.7045 -5.3379 -3.9229 16 6 5.1547 -6.3986 -5.6918 17 7 6.3435 -6.2821 -6.2422 18 14 3.7904 -7.2978 -6.5971 19 1 3.0331 -6.3336 -7.4348 20 1 4.3808 -8.3493 -7.4637 21 1 2.8729 -7.9253 -5.6124 22 6 2.2142 -5.5527 -1.7522 23 6 2.2334 -4.8977 -0.3676 24 1 -0.3633 -0.0983 1.0230 25 1 -0.3633 0.9350 -0.4264 26 1 -0.3633 -0.8368 -0.5966 27 1 4.3048 1.4167 -0.0003 28 1 4.4595 -1.2663 0.0090 29 1 3.8624 -2.0496 -1.3843 30 1 4.6805 -3.4786 -0.7018 31 1 4.7202 -3.6345 -3.1409 32 1 2.9584 -3.3877 -3.2148 33 1 4.3604 -5.7228 -1.8361 34 1 3.3116 -7.0480 -3.6946 35 1 2.8088 -5.5193 -4.4552 36 1 6.5117 -6.6627 -7.1183 37 1 2.0488 -6.6247 -1.6453 38 1 1.4121 -5.1186 -2.3490 39 1 2.9740 -5.3926 0.2606 40 1 1.2489 -4.9820 0.0926 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335510765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:16 Heat of formation + Delta-G solvation = 42.592722 kcal Electronic energy + Delta-G solvation = -21787.711074 eV Core-core repulsion = 18604.232443 eV Total energy + Delta-G solvation = -3183.478632 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.67892 -39.88108 -37.47881 -34.37903 -33.38441 -32.37615 -31.56117 -30.21337 -28.63700 -27.26129 -25.14358 -23.21529 -22.93922 -21.70791 -20.98232 -19.85267 -19.06592 -17.32210 -16.82215 -16.55550 -16.30299 -15.64778 -14.99512 -14.44918 -14.32448 -14.08191 -13.80020 -13.64680 -13.20857 -13.08526 -13.00590 -12.80251 -12.64053 -12.29975 -12.12550 -11.51227 -11.19775 -10.99980 -10.84795 -10.69348 -10.38036 -10.12055 -9.91508 -9.73344 -9.54164 -9.33509 -9.12664 -8.99609 -8.56353 -8.52192 -6.07240 -4.04787 1.20044 2.20460 2.49119 2.99317 3.10041 3.28293 3.36441 3.39515 4.29679 4.38678 4.42754 4.95551 4.97991 5.06196 5.12003 5.24184 5.25586 5.28842 5.31622 5.40229 5.46445 5.54822 5.62337 5.71733 5.84864 5.93146 6.20529 6.23123 6.33742 6.37340 6.52695 6.56158 6.74224 6.80996 6.91831 7.22856 7.32885 7.39778 7.76713 7.87788 8.03418 8.50218 8.97060 9.56012 11.05941 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025796 B = 0.004182 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.174756 B = 6693.025263 C = 7130.887610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.262 5.262 3 N -0.283 5.283 4 C -0.003 4.003 5 C -0.193 4.193 6 C -0.030 4.030 7 C 0.588 3.412 8 O -0.549 6.549 9 N -0.588 5.588 10 C 0.085 3.915 11 C -0.120 4.120 12 C -0.073 4.073 13 C -0.009 4.009 14 C -0.517 4.517 15 H 0.074 0.926 16 C 0.067 3.933 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.266 1.266 22 C -0.132 4.132 23 C 0.114 3.886 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.188 0.812 28 H 0.168 0.832 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.016 0.984 35 H 0.010 0.990 36 H 0.262 0.738 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.135 10.224 13.049 18.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.050 5.050 3 N -0.115 5.115 4 C -0.179 4.179 5 C -0.221 4.221 6 C -0.159 4.159 7 C 0.375 3.625 8 O -0.428 6.428 9 N -0.320 5.320 10 C -0.036 4.036 11 C -0.158 4.158 12 C -0.092 4.092 13 C -0.047 4.047 14 C -0.554 4.554 15 H 0.092 0.908 16 C -0.134 4.134 17 N -0.543 5.543 18 Si 0.705 3.295 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.170 4.170 23 C -0.007 4.007 24 H 0.105 0.895 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.205 0.795 28 H 0.186 0.814 29 H 0.115 0.885 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.034 0.966 35 H 0.028 0.972 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.501 10.918 13.134 19.544 hybrid contribution 0.034 -1.188 -0.722 1.391 sum -9.467 9.730 12.412 18.394 Atomic orbital electron populations 1.22181 0.72711 1.05034 1.04810 1.45590 1.07801 1.01797 1.49777 1.73197 1.04471 1.13575 1.20281 1.23611 0.93434 0.95038 1.05769 1.22479 0.95885 0.95482 1.08272 1.21451 0.91668 0.89620 1.13175 1.16951 0.83907 0.83154 0.78491 1.90775 1.20971 1.82924 1.48152 1.47869 1.24976 1.06257 1.52858 1.22435 0.85571 1.01866 0.93778 1.21845 1.03820 0.95866 0.94286 1.21027 0.94779 0.94912 0.98453 1.19618 0.97738 0.95322 0.91980 1.21127 0.96047 1.35996 1.02275 0.90801 1.25016 0.95251 0.95773 0.97392 1.69908 1.21373 1.46146 1.16837 0.86821 0.82733 0.79992 0.79980 1.20423 1.21464 1.19080 1.22064 0.99688 1.00386 0.94887 1.21731 1.01822 0.78829 0.98341 0.89489 0.88687 0.88538 0.79544 0.81442 0.88483 0.90970 0.88897 0.92462 0.91568 0.96580 0.97170 0.92778 0.90899 0.92026 0.91191 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.91 10.53 59.85 0.63 1.54 16 2 N -0.26 -3.36 3.75 -63.88 -0.24 -3.60 16 3 N -0.28 -3.61 11.90 30.59 0.36 -3.25 16 4 C 0.00 -0.03 12.03 -17.43 -0.21 -0.24 16 5 C -0.19 -2.19 8.60 -38.98 -0.34 -2.53 16 6 C -0.03 -0.41 6.41 -82.06 -0.53 -0.93 16 7 C 0.59 8.65 7.46 -12.64 -0.09 8.55 16 8 O -0.55 -9.11 15.09 5.26 0.08 -9.03 16 9 N -0.59 -8.16 2.98 -174.40 -0.52 -8.68 16 10 C 0.09 1.12 5.14 -3.94 -0.02 1.10 16 11 C -0.12 -1.98 5.17 -26.83 -0.14 -2.12 16 12 C -0.07 -1.30 2.10 -90.58 -0.19 -1.49 16 13 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 14 C -0.52 -13.84 8.94 -34.44 -0.31 -14.15 16 15 H 0.07 2.10 7.30 -52.48 -0.38 1.71 16 16 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 17 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 18 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 22 C -0.13 -2.00 5.36 -26.61 -0.14 -2.14 16 23 C 0.11 1.55 6.45 -3.71 -0.02 1.52 16 24 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.10 0.97 7.40 -51.93 -0.38 0.59 16 27 H 0.19 1.40 8.06 -52.48 -0.42 0.98 16 28 H 0.17 1.57 6.43 -52.48 -0.34 1.23 16 29 H 0.10 1.16 4.27 -51.93 -0.22 0.94 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.09 1.69 6.91 -51.93 -0.36 1.33 16 32 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 35 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 1.20 7.00 -51.93 -0.36 0.84 16 LS Contribution 318.66 15.07 4.80 4.80 Total: -1.00 -32.31 318.66 -6.75 -39.06 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -5.79 Total: -0.20 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -1.56 Total: -9.42 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.38 Total: -41.84 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.08 Total: -9.03 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.31 -6.75 -39.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335510765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.655 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds