Wall clock time and date at job start Mon Mar 30 2020 01:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28442 * 125.18962 * 2 1 4 4 C 1.30865 * 110.92496 * 180.02562 * 3 2 1 5 5 C 1.39670 * 107.86486 * 359.76832 * 4 3 2 6 6 C 1.36608 * 125.18917 * 180.02562 * 2 1 3 7 7 C 1.47158 * 126.88554 * 359.94488 * 6 2 1 8 8 O 1.21622 * 120.00050 * 333.56476 * 7 6 2 9 9 N 1.34781 * 119.99732 * 153.55775 * 7 6 2 10 10 C 1.46918 * 120.63373 * 351.47643 * 9 7 6 11 11 C 1.52755 * 109.01185 * 233.58104 * 10 9 7 12 12 C 1.53045 * 109.38441 * 305.59228 * 11 10 9 13 13 C 1.52992 * 109.46043 * 181.25741 * 12 11 10 14 14 C 1.50709 * 109.47424 * 64.93080 * 13 12 11 15 15 H 1.08003 * 119.99421 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00128 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99774 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00188 * 359.97438 * 16 14 13 19 19 H 1.48492 * 109.47386 * 90.00154 * 18 16 14 20 20 H 1.48497 * 109.47068 * 210.00292 * 18 16 14 21 21 H 1.48504 * 109.46782 * 330.00187 * 18 16 14 22 22 C 1.53041 * 109.53781 * 61.23364 * 12 11 10 23 23 C 1.46932 * 120.62601 * 171.75587 * 9 7 6 24 24 H 1.09005 * 109.47101 * 264.50892 * 1 2 3 25 25 H 1.08997 * 109.47162 * 24.51612 * 1 2 3 26 26 H 1.09003 * 109.47057 * 144.51338 * 1 2 3 27 27 H 1.08005 * 126.06509 * 180.02562 * 4 3 2 28 28 H 1.08006 * 127.32060 * 180.23799 * 5 4 3 29 29 H 1.09004 * 109.58670 * 353.41774 * 10 9 7 30 30 H 1.09000 * 109.58667 * 113.83916 * 10 9 7 31 31 H 1.08991 * 109.57030 * 185.54996 * 11 10 9 32 32 H 1.09008 * 109.36063 * 65.49795 * 11 10 9 33 33 H 1.09001 * 109.45208 * 301.21793 * 12 11 10 34 34 H 1.09003 * 109.47514 * 184.92825 * 13 12 11 35 35 H 1.09001 * 109.47666 * 304.93052 * 13 12 11 36 36 H 0.96997 * 119.99742 * 179.97438 * 17 16 14 37 37 H 1.08995 * 109.49390 * 178.68349 * 22 12 11 38 38 H 1.08998 * 109.52196 * 58.60697 * 22 12 11 39 39 H 1.09000 * 109.58268 * 246.16178 * 23 9 7 40 40 H 1.09006 * 109.58606 * 6.43920 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7272 -0.0005 5 6 3.5612 -0.6667 0.0044 6 6 2.2522 -1.1164 -0.0005 7 6 1.7993 -2.5166 0.0000 8 8 0.7152 -2.8049 0.4698 9 7 2.5859 -3.4794 -0.5203 10 6 3.8088 -3.1307 -1.2561 11 6 3.7750 -3.8058 -2.6259 12 6 3.5567 -5.3098 -2.4458 13 6 3.5538 -5.9921 -3.8151 14 6 4.9158 -5.8581 -4.4462 15 1 5.7045 -5.3379 -3.9229 16 6 5.1547 -6.3986 -5.6918 17 7 6.3435 -6.2821 -6.2422 18 14 3.7904 -7.2978 -6.5971 19 1 3.0331 -6.3336 -7.4348 20 1 4.3808 -8.3493 -7.4637 21 1 2.8729 -7.9253 -5.6124 22 6 2.2142 -5.5527 -1.7522 23 6 2.2334 -4.8977 -0.3676 24 1 -0.3633 -0.0983 1.0230 25 1 -0.3633 0.9350 -0.4264 26 1 -0.3633 -0.8368 -0.5966 27 1 4.3048 1.4167 -0.0003 28 1 4.4595 -1.2663 0.0090 29 1 3.8624 -2.0496 -1.3843 30 1 4.6805 -3.4786 -0.7018 31 1 4.7202 -3.6345 -3.1409 32 1 2.9584 -3.3877 -3.2148 33 1 4.3604 -5.7228 -1.8361 34 1 3.3116 -7.0480 -3.6946 35 1 2.8088 -5.5193 -4.4552 36 1 6.5117 -6.6627 -7.1183 37 1 2.0488 -6.6247 -1.6453 38 1 1.4121 -5.1186 -2.3490 39 1 2.9740 -5.3926 0.2606 40 1 1.2489 -4.9820 0.0926 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335510765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:16 Heat of formation + Delta-G solvation = 22.194239 kcal Electronic energy + Delta-G solvation = -21788.595619 eV Core-core repulsion = 18604.232443 eV Total energy + Delta-G solvation = -3184.363176 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.57806 -41.01857 -38.75155 -35.83662 -34.45606 -34.00794 -32.77805 -31.30917 -30.26579 -28.08826 -26.58533 -24.40011 -24.28297 -22.74035 -22.29922 -21.09382 -20.20551 -18.85601 -18.35601 -17.67247 -17.25945 -16.64871 -16.34529 -16.05775 -15.34273 -15.29461 -15.12498 -14.82354 -14.69325 -14.18052 -14.16963 -14.01742 -13.76623 -13.49735 -13.37358 -13.10217 -12.81362 -12.41919 -12.17908 -11.98319 -11.83367 -11.69207 -11.39904 -11.28255 -11.02649 -10.91041 -10.71007 -10.27017 -9.93712 -9.66865 -8.23930 -6.24990 0.22340 1.30233 1.35998 1.38259 1.48613 1.62904 1.98812 2.07947 2.38629 3.12077 3.27960 3.59732 3.90630 3.99383 4.07529 4.15065 4.19617 4.26619 4.33657 4.40754 4.51426 4.55807 4.62692 4.65262 4.80414 4.83134 4.87333 4.94002 5.08483 5.17680 5.24883 5.34289 5.40740 5.51644 5.59203 5.71442 5.73331 5.75464 6.23326 6.36273 6.82708 6.87758 7.05156 7.39006 8.92164 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025796 B = 0.004182 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.174756 B = 6693.025263 C = 7130.887610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.271 5.271 3 N -0.300 5.300 4 C -0.003 4.003 5 C -0.187 4.187 6 C -0.056 4.056 7 C 0.588 3.412 8 O -0.573 6.573 9 N -0.588 5.588 10 C 0.096 3.904 11 C -0.116 4.116 12 C -0.070 4.070 13 C -0.008 4.008 14 C -0.514 4.514 15 H 0.045 0.955 16 C 0.006 3.994 17 N -0.951 5.951 18 Si 0.939 3.061 19 H -0.273 1.273 20 H -0.288 1.288 21 H -0.249 1.249 22 C -0.123 4.123 23 C 0.118 3.882 24 H 0.093 0.907 25 H 0.114 0.886 26 H 0.088 0.912 27 H 0.219 0.781 28 H 0.188 0.812 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.017 0.983 35 H 0.008 0.992 36 H 0.263 0.737 37 H 0.085 0.915 38 H 0.053 0.947 39 H 0.089 0.911 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.977 10.523 14.096 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.059 5.059 3 N -0.132 5.132 4 C -0.178 4.178 5 C -0.215 4.215 6 C -0.184 4.184 7 C 0.376 3.624 8 O -0.454 6.454 9 N -0.319 5.319 10 C -0.026 4.026 11 C -0.154 4.154 12 C -0.089 4.089 13 C -0.046 4.046 14 C -0.552 4.552 15 H 0.063 0.937 16 C -0.191 4.191 17 N -0.592 5.592 18 Si 0.764 3.236 19 H -0.199 1.199 20 H -0.214 1.214 21 H -0.172 1.172 22 C -0.161 4.161 23 C -0.004 4.004 24 H 0.111 0.889 25 H 0.133 0.867 26 H 0.107 0.893 27 H 0.236 0.764 28 H 0.205 0.795 29 H 0.129 0.871 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.035 0.965 35 H 0.026 0.974 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.071 0.929 39 H 0.107 0.893 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.356 11.218 14.196 20.847 hybrid contribution 0.361 -1.223 -1.026 1.637 sum -9.995 9.995 13.170 19.319 Atomic orbital electron populations 1.22328 0.71715 1.05795 1.05275 1.45856 1.08618 1.01606 1.49847 1.73195 1.05378 1.13857 1.20806 1.24213 0.93672 0.95504 1.04423 1.22797 0.95783 0.95967 1.06967 1.21491 0.92738 0.89248 1.14968 1.17125 0.83491 0.83735 0.78030 1.90756 1.21959 1.83387 1.49300 1.47903 1.24994 1.06375 1.52647 1.22384 0.86005 1.02349 0.91829 1.21723 1.02077 0.95380 0.96208 1.20944 0.96578 0.95255 0.96100 1.19592 0.94845 0.95858 0.94269 1.21471 0.97351 1.34363 1.02014 0.93659 1.25885 0.97493 0.97070 0.98635 1.70051 1.23658 1.48049 1.17487 0.85826 0.80003 0.78841 0.78971 1.19889 1.21373 1.17242 1.21950 0.97356 1.01388 0.95430 1.21734 1.02618 0.78654 0.97371 0.88877 0.86721 0.89286 0.76416 0.79464 0.87118 0.88998 0.91183 0.93541 0.91605 0.96496 0.97393 0.92804 0.89683 0.92862 0.89261 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.65 10.53 127.77 1.35 2.99 16 2 N -0.27 -6.59 3.75 -356.02 -1.33 -7.92 16 3 N -0.30 -7.12 11.90 -57.14 -0.68 -7.80 16 4 C 0.00 -0.05 12.03 85.18 1.02 0.97 16 5 C -0.19 -3.79 8.60 22.66 0.19 -3.59 16 6 C -0.06 -1.41 6.41 40.78 0.26 -1.15 16 7 C 0.59 16.43 7.46 86.58 0.65 17.07 16 8 O -0.57 -18.45 15.09 -4.10 -0.06 -18.51 16 9 N -0.59 -15.14 2.98 -823.94 -2.45 -17.60 16 10 C 0.10 2.31 5.14 86.22 0.44 2.76 16 11 C -0.12 -3.72 5.17 30.53 0.16 -3.57 16 12 C -0.07 -2.42 2.10 -10.77 -0.02 -2.44 16 13 C -0.01 -0.36 3.52 29.85 0.10 -0.26 16 14 C -0.51 -27.84 8.94 25.60 0.23 -27.61 16 15 H 0.05 2.65 7.30 -2.91 -0.02 2.63 16 16 C 0.01 0.32 5.47 84.65 0.46 0.78 16 17 N -0.95 -58.22 13.96 21.45 0.30 -57.92 16 18 Si 0.94 43.69 27.47 68.60 1.88 45.58 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 22 C -0.12 -3.48 5.36 30.67 0.16 -3.31 16 23 C 0.12 2.91 6.45 86.36 0.56 3.47 16 24 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 25 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.09 1.77 7.40 -2.39 -0.02 1.75 16 27 H 0.22 2.54 8.06 -2.91 -0.02 2.52 16 28 H 0.19 2.90 6.43 -2.91 -0.02 2.88 16 29 H 0.11 2.41 4.27 -2.39 -0.01 2.40 16 30 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 2.57 6.91 -2.39 -0.02 2.56 16 32 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16 35 H 0.01 0.35 7.57 -2.39 -0.02 0.33 16 36 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.09 2.24 7.00 -2.38 -0.02 2.22 16 Total: -1.00 -69.78 318.66 4.20 -65.57 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.98 Total: 12.49 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 5.57 Total: -13.90 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -4.17 Total: -91.23 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.06 Total: -18.51 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.88 Total: 45.58 kcal Total: -69.78 4.20 -65.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335510765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.769 kcal (2) G-P(sol) polarization free energy of solvation -69.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds