Wall clock time and date at job start Mon Mar 30 2020 02:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99950 * 2 1 4 4 H 1.48500 * 109.47331 * 239.99732 * 3 2 1 5 5 H 1.48504 * 109.47452 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47223 * 119.99697 * 3 2 1 7 7 C 1.37871 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00109 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00307 * 359.97438 * 7 2 1 10 10 C 1.53033 * 109.46306 * 179.97438 * 9 7 2 11 11 C 1.53196 * 109.31375 * 181.37136 * 10 9 7 12 12 N 1.46928 * 108.77349 * 305.36747 * 11 10 9 13 13 C 1.34771 * 120.62778 * 233.58350 * 12 11 10 14 14 O 1.21280 * 120.00604 * 359.97438 * 13 12 11 15 15 C 1.50705 * 119.99756 * 180.02562 * 13 12 11 16 16 C 1.53954 * 113.57705 * 277.71730 * 15 13 12 17 17 C 1.52914 * 86.77860 * 220.66293 * 16 15 13 18 18 C 1.52910 * 121.13241 * 150.62315 * 17 16 15 19 19 C 1.53947 * 86.78382 * 100.81841 * 18 17 16 20 20 C 1.52905 * 121.13770 * 259.17478 * 17 16 15 21 21 C 1.52904 * 88.04490 * 24.90311 * 17 16 15 22 22 C 1.46922 * 118.73776 * 53.85973 * 12 11 10 23 23 C 1.53041 * 109.44725 * 300.06429 * 9 7 2 24 24 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.45346 * 60.02839 * 9 7 2 26 26 H 1.09007 * 109.49344 * 61.42426 * 10 9 7 27 27 H 1.09000 * 109.49948 * 301.32532 * 10 9 7 28 28 H 1.08994 * 109.58470 * 185.57922 * 11 10 9 29 29 H 1.09000 * 109.58290 * 65.15513 * 11 10 9 30 30 H 1.09000 * 112.88096 * 48.85938 * 15 13 12 31 31 H 1.08993 * 113.66420 * 335.13481 * 16 15 13 32 32 H 1.08992 * 113.66083 * 106.19553 * 16 15 13 33 33 H 1.09003 * 113.66021 * 215.29352 * 18 17 16 34 34 H 1.09001 * 113.66716 * 346.34206 * 18 17 16 35 35 H 1.09003 * 113.57959 * 270.12744 * 19 18 17 36 36 H 1.08997 * 113.65032 * 139.34996 * 19 18 17 37 37 H 1.09004 * 113.66112 * 13.66238 * 20 17 16 38 38 H 1.09000 * 113.66196 * 144.70512 * 20 17 16 39 39 H 1.09003 * 113.66244 * 220.62943 * 21 17 16 40 40 H 1.08997 * 113.75201 * 89.58186 * 21 17 16 41 41 H 1.09004 * 109.58767 * 65.92719 * 22 12 11 42 42 H 1.09001 * 109.58847 * 186.34928 * 22 12 11 43 43 H 1.08996 * 109.49906 * 298.56984 * 23 9 7 44 44 H 1.09005 * 109.49553 * 58.66967 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2458 -3.6621 -0.0018 11 6 1.4767 -4.9866 -0.0364 12 7 0.5233 -5.0092 1.0813 13 6 0.5133 -6.0356 1.9546 14 8 1.2958 -6.9527 1.8217 15 6 -0.4712 -6.0445 3.0956 16 6 -0.0183 -5.2080 4.3061 17 6 -0.5661 -6.3359 5.1813 18 6 0.0368 -6.6351 6.5543 19 6 -1.1575 -5.8675 7.1497 20 6 -1.9290 -6.2163 5.8640 21 6 -0.3535 -7.2843 4.0008 22 6 -0.4228 -3.8945 1.2253 23 6 0.3707 -2.5793 1.2487 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5567 -0.8907 26 1 2.8564 -3.6195 0.9001 27 1 2.8875 -3.5910 -0.8800 28 1 2.1753 -5.8174 0.0623 29 1 0.9365 -5.0708 -0.9793 30 1 -1.4917 -5.8329 2.7766 31 1 1.0627 -5.0868 4.3744 32 1 -0.5591 -4.2679 4.4150 33 1 0.0451 -7.6954 6.8068 34 1 0.9978 -6.1500 6.7254 35 1 -0.9729 -4.8001 7.2715 36 1 -1.5716 -6.3298 8.0457 37 1 -2.5384 -5.3966 5.4835 38 1 -2.4733 -7.1588 5.9224 39 1 -1.1620 -8.0028 3.8658 40 1 0.6329 -7.7477 3.9821 41 1 -1.1150 -3.8915 0.3832 42 1 -0.9781 -4.0044 2.1568 43 1 0.9987 -2.5467 2.1390 44 1 -0.3219 -1.7376 1.2603 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335517026.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:10 Heat of formation + Delta-G solvation = -23.289632 kcal Electronic energy + Delta-G solvation = -22359.436448 eV Core-core repulsion = 19276.641286 eV Total energy + Delta-G solvation = -3082.795161 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.95113 -40.32057 -38.35116 -35.60273 -35.28678 -33.00958 -31.69395 -28.32289 -26.86601 -26.65476 -26.37987 -24.53604 -23.88723 -22.51624 -21.12319 -19.50726 -18.88767 -18.60912 -17.99348 -16.97385 -16.58472 -16.48196 -16.05946 -15.82169 -15.31843 -14.88902 -14.59487 -14.43839 -14.03565 -13.90546 -13.69450 -13.44760 -13.19124 -13.09430 -12.93139 -12.87264 -12.77643 -12.48009 -12.14695 -11.97016 -11.88267 -11.75783 -11.48046 -11.19993 -11.02047 -10.99411 -10.97151 -10.78886 -10.47311 -10.37239 -9.53455 -8.07702 -6.20969 1.42723 1.43382 1.50658 1.62411 2.12106 2.44224 3.18798 3.43816 3.45121 3.59534 3.73594 3.79909 3.97399 4.02387 4.21702 4.25366 4.38714 4.41352 4.49901 4.56280 4.61007 4.71953 4.74635 4.81760 4.84806 4.89912 4.94968 4.96805 5.03479 5.07383 5.13124 5.15746 5.17968 5.25345 5.37314 5.43412 5.53773 5.59367 5.63149 5.66676 5.98646 6.13657 6.39342 6.54304 6.87773 7.20391 7.46662 8.95537 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021105 B = 0.004507 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.404632 B = 6210.860495 C = 7017.699195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.021 3.979 3 Si 0.947 3.053 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.045 0.955 9 C 0.045 3.955 10 C -0.112 4.112 11 C 0.115 3.885 12 N -0.603 5.603 13 C 0.516 3.484 14 O -0.592 6.592 15 C -0.131 4.131 16 C -0.096 4.096 17 C -0.102 4.102 18 C -0.131 4.131 19 C -0.135 4.135 20 C -0.110 4.110 21 C -0.100 4.100 22 C 0.115 3.885 23 C -0.112 4.112 24 H 0.262 0.738 25 H 0.003 0.997 26 H 0.039 0.961 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.131 0.869 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.028 0.972 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.088 -11.145 11.254 16.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.178 4.178 3 Si 0.773 3.227 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.576 4.576 8 H 0.064 0.936 9 C 0.027 3.973 10 C -0.151 4.151 11 C -0.008 4.008 12 N -0.334 5.334 13 C 0.306 3.694 14 O -0.473 6.473 15 C -0.152 4.152 16 C -0.134 4.134 17 C -0.102 4.102 18 C -0.168 4.168 19 C -0.173 4.173 20 C -0.148 4.148 21 C -0.138 4.138 22 C -0.007 4.007 23 C -0.151 4.151 24 H 0.071 0.929 25 H 0.021 0.979 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.149 0.851 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.118 0.882 43 H 0.046 0.954 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.838 -11.475 11.165 17.041 hybrid contribution 0.832 1.252 -0.526 1.593 sum -5.006 -10.223 10.639 15.580 Atomic orbital electron populations 1.69932 1.06748 1.27223 1.51058 1.25594 0.95685 1.01804 0.94761 0.85786 0.78578 0.79746 0.78557 1.20081 1.20682 1.20078 1.21508 0.92845 0.92323 1.50884 0.93638 1.18606 0.93033 0.91794 0.93872 1.21845 0.98334 0.94470 1.00424 1.21573 0.92104 0.98120 0.88982 1.48312 1.35669 1.21643 1.27767 1.21144 0.84625 0.80646 0.82957 1.90593 1.43507 1.37626 1.75612 1.22823 0.99308 1.01374 0.91709 1.22557 1.00617 0.97568 0.92652 1.22397 0.99005 0.95884 0.92898 1.22798 0.98115 1.01148 0.94731 1.22800 0.96466 1.00446 0.97569 1.22690 0.94033 1.02711 0.95322 1.22643 1.02541 0.95081 0.93512 1.21999 0.90877 0.85295 1.02492 1.21836 0.99253 0.96095 0.97875 0.92861 0.97862 0.94206 0.91957 0.90473 0.91262 0.85140 0.91408 0.89645 0.89123 0.92261 0.90457 0.90264 0.90772 0.88504 0.89683 0.90846 0.91636 0.88245 0.95362 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.79 11.31 21.44 0.24 -49.55 16 2 C 0.02 1.11 5.30 84.65 0.45 1.56 16 3 Si 0.95 42.61 29.54 68.60 2.03 44.63 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.54 -29.04 8.56 25.60 0.22 -28.82 16 8 H 0.05 2.46 7.74 -2.91 -0.02 2.44 16 9 C 0.05 2.19 2.06 -11.51 -0.02 2.17 16 10 C -0.11 -4.72 5.30 30.67 0.16 -4.55 16 11 C 0.11 4.27 6.43 86.36 0.56 4.82 16 12 N -0.60 -21.40 2.97 -818.07 -2.43 -23.82 16 13 C 0.52 17.74 7.22 87.66 0.63 18.37 16 14 O -0.59 -24.04 15.30 -3.03 -0.05 -24.08 16 15 C -0.13 -3.35 2.73 -10.90 -0.03 -3.38 16 16 C -0.10 -2.31 6.97 30.89 0.22 -2.10 16 17 C -0.10 -1.99 1.11 -52.31 -0.06 -2.05 16 18 C -0.13 -2.30 7.84 30.88 0.24 -2.06 16 19 C -0.14 -2.02 8.08 31.23 0.25 -1.77 16 20 C -0.11 -1.67 7.84 30.88 0.24 -1.43 16 21 C -0.10 -2.30 7.17 30.89 0.22 -2.08 16 22 C 0.12 3.96 6.33 86.51 0.55 4.50 16 23 C -0.11 -4.90 5.17 30.82 0.16 -4.74 16 24 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 25 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 26 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 27 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.08 2.88 7.01 -2.39 -0.02 2.87 16 29 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.13 2.79 7.47 -2.39 -0.02 2.77 16 31 H 0.07 1.90 8.09 -2.39 -0.02 1.88 16 32 H 0.08 1.91 7.98 -2.39 -0.02 1.89 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.07 2.03 7.42 -2.39 -0.02 2.01 16 41 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 42 H 0.10 2.79 5.47 -2.39 -0.01 2.78 16 43 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.08 3.92 6.03 -2.38 -0.01 3.91 16 Total: -1.00 -61.24 339.92 4.54 -56.70 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.96 Total: 17.66 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 3.79 Total: -21.54 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -2.18 Total: -73.37 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.05 Total: -24.08 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -61.24 4.54 -56.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335517026.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.411 kcal (2) G-P(sol) polarization free energy of solvation -61.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds