Wall clock time and date at job start Mon Mar 30 2020 01:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00305 * 2 1 4 4 C 1.38264 * 111.00089 * 123.95384 * 2 1 3 5 5 N 1.32432 * 119.82504 * 304.66695 * 4 2 1 6 6 C 1.31842 * 121.77663 * 179.72538 * 5 4 2 7 7 C 1.38380 * 121.21949 * 0.58804 * 6 5 4 8 8 C 1.38336 * 119.50438 * 359.42137 * 7 6 5 9 9 C 1.39978 * 118.36492 * 0.27857 * 8 7 6 10 10 C 1.47432 * 120.60737 * 179.97438 * 9 8 7 11 11 O 1.21604 * 120.00078 * 174.53175 * 10 9 8 12 12 N 1.34773 * 119.99994 * 354.52503 * 10 9 8 13 13 C 1.46500 * 120.00089 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47027 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47091 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47357 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99750 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00199 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00070 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00055 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47622 * 59.99567 * 20 18 16 22 22 H 1.48500 * 109.47195 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.47090 * 299.99882 * 20 18 16 24 24 H 1.09001 * 109.47609 * 296.04981 * 1 2 3 25 25 H 1.09005 * 109.47347 * 56.04983 * 1 2 3 26 26 H 1.08998 * 109.47392 * 176.04490 * 1 2 3 27 27 H 1.08994 * 109.47175 * 188.82106 * 3 2 1 28 28 H 1.09004 * 109.46585 * 308.81867 * 3 2 1 29 29 H 1.09002 * 109.47246 * 68.81571 * 3 2 1 30 30 H 1.08001 * 119.39845 * 180.29114 * 6 5 4 31 31 H 1.08001 * 120.25030 * 179.70314 * 7 6 5 32 32 H 1.07997 * 120.82027 * 180.29813 * 8 7 6 33 33 H 0.97009 * 120.00341 * 0.02562 * 12 10 9 34 34 H 1.09003 * 109.47090 * 300.00019 * 13 12 10 35 35 H 1.08997 * 109.47472 * 60.00580 * 13 12 10 36 36 H 1.08994 * 109.47159 * 300.00127 * 14 13 12 37 37 H 1.08998 * 109.47132 * 60.00176 * 14 13 12 38 38 H 1.09003 * 109.47050 * 299.99843 * 15 14 13 39 39 H 1.08998 * 109.46996 * 60.00083 * 15 14 13 40 40 H 0.97003 * 120.00210 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9645 -0.7209 1.0707 5 7 1.5904 -0.4114 2.3028 6 6 2.0347 -1.0763 3.3510 7 6 2.9259 -2.1255 3.2099 8 6 3.3509 -2.4930 1.9458 9 6 2.8625 -1.7780 0.8459 10 6 3.2832 -2.1273 -0.5233 11 8 2.7777 -1.5662 -1.4764 12 7 4.2280 -3.0683 -0.7186 13 6 4.6464 -3.4150 -2.0791 14 6 5.7214 -4.5021 -2.0206 15 6 6.1589 -4.8637 -3.4415 16 6 7.2173 -5.9349 -3.3840 17 1 7.5449 -6.3197 -2.4295 18 6 7.7674 -6.4238 -4.5498 19 7 7.3681 -5.9557 -5.7122 20 14 9.0788 -7.7521 -4.4786 21 1 8.5269 -8.9574 -3.8094 22 1 9.5035 -8.1030 -5.8576 23 1 10.2485 -7.2523 -3.7120 24 1 -0.3634 0.4513 0.9232 25 1 -0.3634 0.5739 -0.8525 26 1 -0.3634 -1.0252 -0.0709 27 1 3.0737 1.3466 -0.1576 28 1 1.5242 1.9414 -0.8007 29 1 1.7790 1.8437 0.9582 30 1 1.7006 -0.7940 4.3385 31 1 3.2834 -2.6564 4.0798 32 1 4.0423 -3.3116 1.8107 33 1 4.6310 -3.5162 0.0417 34 1 3.7877 -3.7834 -2.6405 35 1 5.0502 -2.5304 -2.5716 36 1 6.5801 -4.1342 -1.4591 37 1 5.3173 -5.3866 -1.5283 38 1 5.3003 -5.2316 -4.0034 39 1 6.5631 -3.9790 -3.9334 40 1 7.7554 -6.2994 -6.5324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349298370.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:30 Heat of formation + Delta-G solvation = 10.497420 kcal Electronic energy + Delta-G solvation = -20811.825244 eV Core-core repulsion = 17626.954856 eV Total energy + Delta-G solvation = -3184.870388 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.01525 -38.84538 -37.09371 -35.27769 -33.45795 -32.74646 -31.16161 -30.64291 -27.72050 -26.90782 -25.19987 -24.67713 -22.96387 -21.70899 -20.71353 -20.17716 -17.85258 -17.09789 -16.97221 -16.28794 -15.64703 -15.19151 -15.11402 -15.02552 -14.47766 -14.32378 -13.99160 -13.85245 -13.35979 -13.18769 -12.83148 -12.36621 -12.26288 -12.10752 -11.82401 -11.82146 -11.67810 -10.88260 -10.71752 -10.62394 -10.18549 -10.14298 -9.85033 -9.83658 -9.38621 -9.23427 -9.12529 -8.67912 -8.52625 -8.36614 -6.01302 -4.04564 0.45183 0.83987 2.94202 3.32013 3.32821 3.37002 3.39115 3.48943 3.68075 4.18098 4.44305 4.47053 4.59689 4.79211 4.85661 5.13424 5.22798 5.23791 5.34332 5.38952 5.46696 5.63271 5.73441 5.74493 5.76872 5.79295 5.80696 6.07912 6.18807 6.52246 6.61736 6.69150 6.85825 7.01812 7.10430 7.53023 7.63988 7.77193 7.78102 7.97462 8.38098 8.50268 9.01954 9.59527 11.09952 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031159 B = 0.003047 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.399138 B = 9187.168371 C = 9891.229700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.474 5.474 3 C 0.036 3.964 4 C 0.345 3.655 5 N -0.519 5.519 6 C 0.129 3.871 7 C -0.184 4.184 8 C -0.042 4.042 9 C -0.154 4.154 10 C 0.550 3.450 11 O -0.497 6.497 12 N -0.727 5.727 13 C 0.120 3.880 14 C -0.121 4.121 15 C 0.024 3.976 16 C -0.524 4.524 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.039 0.961 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.036 0.964 30 H 0.158 0.842 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.393 0.607 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.255 10.752 19.009 24.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.196 5.196 3 C -0.111 4.111 4 C 0.116 3.884 5 N -0.231 5.231 6 C -0.030 4.030 7 C -0.204 4.204 8 C -0.069 4.069 9 C -0.161 4.161 10 C 0.335 3.665 11 O -0.371 6.371 12 N -0.380 5.380 13 C -0.003 4.003 14 C -0.159 4.159 15 C -0.013 4.013 16 C -0.562 4.562 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.058 0.942 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.176 0.824 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.227 0.773 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.032 11.634 17.729 24.381 hybrid contribution 1.305 -1.373 1.019 2.151 sum -10.727 10.261 18.748 23.913 Atomic orbital electron populations 1.22347 0.85154 1.02603 1.01201 1.59886 1.09190 1.14646 1.35922 1.22357 1.01121 0.86682 1.00940 1.19838 0.90352 0.91017 0.87204 1.67862 1.26055 1.29601 0.99568 1.22749 0.92149 0.90874 0.97261 1.22088 1.00255 0.99833 0.98186 1.21859 0.96067 0.97208 0.91774 1.20924 1.01385 0.98672 0.95079 1.17785 0.80353 0.80456 0.87955 1.90849 1.53654 1.50853 1.41721 1.46162 1.40968 1.40572 1.10281 1.21627 0.98379 0.99020 0.81257 1.21892 0.95865 0.95775 1.02369 1.19022 0.96396 0.96681 0.89249 1.21170 1.21520 1.21054 0.92438 0.92720 1.25025 0.96988 0.96884 0.95537 1.69953 1.42986 1.42949 0.97370 0.86646 0.82050 0.82186 0.77028 1.20256 1.21270 1.20251 0.94213 0.90573 0.91613 0.91372 0.90417 0.94573 0.82441 0.83987 0.83909 0.77285 0.91685 0.91687 0.92785 0.92778 0.96248 0.96245 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.39 60.06 0.56 0.95 16 2 N -0.47 -6.43 2.96 -188.75 -0.56 -6.98 16 3 C 0.04 0.41 9.56 60.06 0.57 0.98 16 4 C 0.35 4.56 5.35 -155.18 -0.83 3.73 16 5 N -0.52 -6.01 9.42 -12.20 -0.11 -6.12 16 6 C 0.13 1.10 11.16 -17.50 -0.20 0.90 16 7 C -0.18 -1.38 10.09 -39.49 -0.40 -1.78 16 8 C -0.04 -0.40 9.63 -38.89 -0.37 -0.77 16 9 C -0.15 -1.99 5.91 -104.64 -0.62 -2.61 16 10 C 0.55 8.66 7.75 -12.52 -0.10 8.57 16 11 O -0.50 -9.54 15.09 5.27 0.08 -9.46 16 12 N -0.73 -10.61 5.51 -61.38 -0.34 -10.94 16 13 C 0.12 2.11 5.67 -4.04 -0.02 2.09 16 14 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 15 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 16 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 17 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 20 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H 0.04 0.42 7.75 -51.93 -0.40 0.02 16 25 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 29 H 0.04 0.39 7.90 -51.93 -0.41 -0.02 16 30 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 32 H 0.14 1.00 6.55 -52.49 -0.34 0.66 16 33 H 0.39 4.54 6.60 -40.82 -0.27 4.27 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 338.65 15.07 5.10 5.10 Total: -1.00 -33.76 338.65 -8.23 -41.99 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -6.03 Total: -0.59 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -2.09 Total: -3.32 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.28 Total: -50.13 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.08 Total: -9.46 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.76 -8.23 -41.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349298370.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.489 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds