Wall clock time and date at job start Mon Mar 30 2020 01:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00305 * 2 1 4 4 C 1.38264 * 111.00089 * 123.95384 * 2 1 3 5 5 N 1.32432 * 119.82504 * 304.66695 * 4 2 1 6 6 C 1.31842 * 121.77663 * 179.72538 * 5 4 2 7 7 C 1.38380 * 121.21949 * 0.58804 * 6 5 4 8 8 C 1.38336 * 119.50438 * 359.42137 * 7 6 5 9 9 C 1.39978 * 118.36492 * 0.27857 * 8 7 6 10 10 C 1.47432 * 120.60737 * 179.97438 * 9 8 7 11 11 O 1.21604 * 120.00078 * 174.53175 * 10 9 8 12 12 N 1.34773 * 119.99994 * 354.52503 * 10 9 8 13 13 C 1.46500 * 120.00089 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47027 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47091 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47357 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99750 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00199 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00070 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00055 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47622 * 59.99567 * 20 18 16 22 22 H 1.48500 * 109.47195 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.47090 * 299.99882 * 20 18 16 24 24 H 1.09001 * 109.47609 * 296.04981 * 1 2 3 25 25 H 1.09005 * 109.47347 * 56.04983 * 1 2 3 26 26 H 1.08998 * 109.47392 * 176.04490 * 1 2 3 27 27 H 1.08994 * 109.47175 * 188.82106 * 3 2 1 28 28 H 1.09004 * 109.46585 * 308.81867 * 3 2 1 29 29 H 1.09002 * 109.47246 * 68.81571 * 3 2 1 30 30 H 1.08001 * 119.39845 * 180.29114 * 6 5 4 31 31 H 1.08001 * 120.25030 * 179.70314 * 7 6 5 32 32 H 1.07997 * 120.82027 * 180.29813 * 8 7 6 33 33 H 0.97009 * 120.00341 * 0.02562 * 12 10 9 34 34 H 1.09003 * 109.47090 * 300.00019 * 13 12 10 35 35 H 1.08997 * 109.47472 * 60.00580 * 13 12 10 36 36 H 1.08994 * 109.47159 * 300.00127 * 14 13 12 37 37 H 1.08998 * 109.47132 * 60.00176 * 14 13 12 38 38 H 1.09003 * 109.47050 * 299.99843 * 15 14 13 39 39 H 1.08998 * 109.46996 * 60.00083 * 15 14 13 40 40 H 0.97003 * 120.00210 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9645 -0.7209 1.0707 5 7 1.5904 -0.4114 2.3028 6 6 2.0347 -1.0763 3.3510 7 6 2.9259 -2.1255 3.2099 8 6 3.3509 -2.4930 1.9458 9 6 2.8625 -1.7780 0.8459 10 6 3.2832 -2.1273 -0.5233 11 8 2.7777 -1.5662 -1.4764 12 7 4.2280 -3.0683 -0.7186 13 6 4.6464 -3.4150 -2.0791 14 6 5.7214 -4.5021 -2.0206 15 6 6.1589 -4.8637 -3.4415 16 6 7.2173 -5.9349 -3.3840 17 1 7.5449 -6.3197 -2.4295 18 6 7.7674 -6.4238 -4.5498 19 7 7.3681 -5.9557 -5.7122 20 14 9.0788 -7.7521 -4.4786 21 1 8.5269 -8.9574 -3.8094 22 1 9.5035 -8.1030 -5.8576 23 1 10.2485 -7.2523 -3.7120 24 1 -0.3634 0.4513 0.9232 25 1 -0.3634 0.5739 -0.8525 26 1 -0.3634 -1.0252 -0.0709 27 1 3.0737 1.3466 -0.1576 28 1 1.5242 1.9414 -0.8007 29 1 1.7790 1.8437 0.9582 30 1 1.7006 -0.7940 4.3385 31 1 3.2834 -2.6564 4.0798 32 1 4.0423 -3.3116 1.8107 33 1 4.6310 -3.5162 0.0417 34 1 3.7877 -3.7834 -2.6405 35 1 5.0502 -2.5304 -2.5716 36 1 6.5801 -4.1342 -1.4591 37 1 5.3173 -5.3866 -1.5283 38 1 5.3003 -5.2316 -4.0034 39 1 6.5631 -3.9790 -3.9334 40 1 7.7554 -6.2994 -6.5324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349298370.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:30 Heat of formation + Delta-G solvation = -11.970549 kcal Electronic energy + Delta-G solvation = -20812.799528 eV Core-core repulsion = 17626.954856 eV Total energy + Delta-G solvation = -3185.844672 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.88391 -40.03129 -37.93766 -36.84422 -35.18038 -33.89491 -32.67022 -31.57497 -28.65406 -28.60898 -26.21072 -25.68671 -24.55113 -22.62270 -22.22019 -21.51791 -18.90091 -18.44619 -17.95602 -17.80113 -16.76405 -16.61132 -16.28162 -16.26115 -15.83887 -15.33277 -15.20092 -14.96693 -14.33518 -14.30400 -13.96940 -13.73398 -13.58907 -13.46264 -13.19779 -12.96425 -12.73652 -12.69798 -12.53433 -12.39477 -11.64819 -11.56270 -11.23803 -11.01332 -10.96803 -10.73217 -10.53477 -10.12796 -9.91716 -9.43075 -8.17978 -6.29712 -0.37152 0.12001 1.42714 1.45861 1.53672 1.93972 2.15705 2.43872 2.64440 2.77836 3.15720 3.44232 3.75216 3.84083 4.00758 4.10408 4.20013 4.24200 4.34575 4.38069 4.50887 4.52814 4.57260 4.62880 4.83831 4.87844 4.94469 4.96775 5.01315 5.08535 5.18800 5.42867 5.46881 5.54862 5.72558 5.82675 5.85654 6.23173 6.24559 6.60608 6.81281 6.87991 7.32253 7.39956 8.94013 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031159 B = 0.003047 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.399138 B = 9187.168371 C = 9891.229700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.502 5.502 3 C 0.041 3.959 4 C 0.327 3.673 5 N -0.536 5.536 6 C 0.130 3.870 7 C -0.168 4.168 8 C -0.038 4.038 9 C -0.182 4.182 10 C 0.550 3.450 11 O -0.542 6.542 12 N -0.715 5.715 13 C 0.134 3.866 14 C -0.101 4.101 15 C 0.024 3.976 16 C -0.542 4.542 17 H 0.068 0.932 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.967 3.033 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.265 1.265 24 H 0.045 0.955 25 H 0.084 0.916 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.194 0.806 31 H 0.185 0.815 32 H 0.168 0.832 33 H 0.411 0.589 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.069 0.931 38 H -0.009 1.009 39 H -0.009 1.009 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.513 9.685 22.451 26.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.225 5.225 3 C -0.105 4.105 4 C 0.098 3.902 5 N -0.249 5.249 6 C -0.029 4.029 7 C -0.187 4.187 8 C -0.065 4.065 9 C -0.189 4.189 10 C 0.336 3.664 11 O -0.419 6.419 12 N -0.369 5.369 13 C 0.010 3.990 14 C -0.139 4.139 15 C -0.014 4.014 16 C -0.580 4.580 17 H 0.086 0.914 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.792 3.208 21 H -0.190 1.190 22 H -0.213 1.213 23 H -0.190 1.190 24 H 0.064 0.936 25 H 0.103 0.897 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.211 0.789 31 H 0.202 0.798 32 H 0.185 0.815 33 H 0.248 0.752 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.010 0.990 39 H 0.010 0.990 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.284 10.557 21.222 26.251 hybrid contribution 1.037 -1.015 0.045 1.452 sum -10.247 9.542 21.267 25.462 Atomic orbital electron populations 1.22298 0.84487 1.02072 1.01848 1.59846 1.10047 1.15407 1.37170 1.22302 1.00262 0.86365 1.01586 1.19907 0.91009 0.91425 0.87822 1.67894 1.26817 1.30608 0.99553 1.23493 0.91313 0.90312 0.97816 1.22531 0.98637 0.98915 0.98626 1.22192 0.95788 0.97045 0.91450 1.20758 1.03429 1.00491 0.94237 1.18266 0.79553 0.79591 0.88963 1.90818 1.55197 1.52419 1.43484 1.45881 1.40897 1.40614 1.09464 1.21199 0.97177 0.97725 0.82877 1.21597 0.96792 0.96851 0.98654 1.18940 0.94967 0.95096 0.92415 1.21667 1.21834 1.21391 0.93073 0.91394 1.26034 0.99529 0.99479 0.95110 1.70110 1.44629 1.44680 0.98202 0.85466 0.79086 0.79148 0.77127 1.18960 1.21278 1.18959 0.93635 0.89712 0.92720 0.92751 0.89447 0.93990 0.78910 0.79797 0.81489 0.75183 0.93304 0.93333 0.91281 0.91211 0.99024 0.99034 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.92 9.39 127.69 1.20 2.12 16 2 N -0.50 -13.93 2.96 -751.07 -2.22 -16.16 16 3 C 0.04 0.97 9.56 127.69 1.22 2.19 16 4 C 0.33 8.52 5.35 133.64 0.72 9.23 16 5 N -0.54 -11.54 9.42 -192.52 -1.81 -13.35 16 6 C 0.13 1.75 11.16 84.73 0.95 2.70 16 7 C -0.17 -1.78 10.09 22.33 0.23 -1.56 16 8 C -0.04 -0.60 9.63 22.72 0.22 -0.38 16 9 C -0.18 -4.58 5.91 -19.88 -0.12 -4.69 16 10 C 0.55 17.48 7.75 86.67 0.67 18.15 16 11 O -0.54 -21.75 15.09 -4.04 -0.06 -21.81 16 12 N -0.71 -20.40 5.51 -466.36 -2.57 -22.97 16 13 C 0.13 4.82 5.67 86.38 0.49 5.31 16 14 C -0.10 -3.87 5.27 30.60 0.16 -3.71 16 15 C 0.02 1.23 4.97 29.85 0.15 1.37 16 16 C -0.54 -30.12 9.11 25.60 0.23 -29.89 16 17 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 18 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 19 N -0.94 -57.39 13.29 21.45 0.28 -57.11 16 20 Si 0.97 43.59 29.54 68.60 2.03 45.61 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 22 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 24 H 0.05 0.97 7.75 -2.39 -0.02 0.95 16 25 H 0.08 1.72 8.07 -2.38 -0.02 1.70 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.09 1.79 8.04 -2.38 -0.02 1.77 16 29 H 0.04 0.90 7.90 -2.39 -0.02 0.88 16 30 H 0.19 1.13 8.06 -2.91 -0.02 1.10 16 31 H 0.18 0.45 8.06 -2.91 -0.02 0.42 16 32 H 0.17 1.67 6.55 -2.91 -0.02 1.65 16 33 H 0.41 8.58 6.60 -92.70 -0.61 7.97 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 38 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 39 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 40 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -76.05 338.65 2.64 -73.42 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.42 Total: 11.27 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 6.57 Total: 1.09 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -6.32 Total: -109.58 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.06 Total: -21.81 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -76.05 2.64 -73.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349298370.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.448 kcal (2) G-P(sol) polarization free energy of solvation -76.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds