Wall clock time and date at job start Mon Mar 30 2020 01:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 120.00337 * 2 1 4 4 C 1.50703 * 109.46750 * 270.00111 * 3 2 1 5 5 C 1.38223 * 119.62264 * 95.02018 * 4 3 2 6 6 C 1.38628 * 119.16031 * 179.97438 * 5 4 3 7 7 C 1.38672 * 118.42475 * 359.97438 * 6 5 4 8 8 C 1.38186 * 119.15778 * 0.02562 * 7 6 5 9 9 N 1.31856 * 119.61279 * 274.99490 * 4 3 2 10 10 C 1.34774 * 120.00001 * 179.97438 * 2 1 3 11 11 O 1.21586 * 120.00431 * 180.02562 * 10 2 1 12 12 N 1.34781 * 119.99689 * 0.02562 * 10 2 1 13 13 C 1.46501 * 119.99569 * 179.97438 * 12 10 2 14 14 C 1.53000 * 109.46943 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47280 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47071 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00178 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99924 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00155 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00114 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47183 * 90.00311 * 20 18 16 22 22 H 1.48497 * 109.47141 * 210.00247 * 20 18 16 23 23 H 1.48501 * 109.47382 * 330.00213 * 20 18 16 24 24 H 1.09001 * 109.46777 * 90.00354 * 1 2 3 25 25 H 1.08993 * 109.47247 * 210.00197 * 1 2 3 26 26 H 1.08998 * 109.47016 * 330.00790 * 1 2 3 27 27 H 1.08989 * 109.47587 * 149.99777 * 3 2 1 28 28 H 1.08996 * 109.46786 * 29.99184 * 3 2 1 29 29 H 1.07995 * 120.41821 * 359.95030 * 5 4 3 30 30 H 1.08006 * 120.78822 * 180.02562 * 6 5 4 31 31 H 1.07993 * 120.42192 * 179.97438 * 7 6 5 32 32 H 1.08001 * 119.60956 * 180.27218 * 8 7 6 33 33 H 0.96999 * 120.00337 * 359.97438 * 12 10 2 34 34 H 1.08999 * 109.47313 * 299.99384 * 13 12 10 35 35 H 1.08997 * 109.47272 * 60.00074 * 13 12 10 36 36 H 1.08999 * 109.46931 * 299.99735 * 14 13 12 37 37 H 1.08997 * 109.47282 * 59.99828 * 14 13 12 38 38 H 1.08999 * 109.47063 * 299.99827 * 15 14 13 39 39 H 1.09004 * 109.46919 * 60.00214 * 15 14 13 40 40 H 0.97000 * 120.00447 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 6 1.5756 2.5853 -2.0300 6 6 1.8161 2.9794 -3.3371 7 6 2.9311 2.4703 -3.9855 8 6 3.7593 1.5927 -3.3121 9 7 3.4992 1.2392 -2.0685 10 6 2.1389 -1.1672 0.0005 11 8 3.3547 -1.1673 0.0010 12 7 1.4649 -2.3344 0.0005 13 6 2.1974 -3.6031 0.0005 14 6 1.2032 -4.7660 -0.0001 15 6 1.9682 -6.0911 -0.0008 16 6 0.9888 -7.2364 -0.0008 17 1 -0.0730 -7.0391 -0.0008 18 6 1.4484 -8.5364 -0.0018 19 7 2.7414 -8.7768 -0.0023 20 14 0.2345 -9.9562 -0.0026 21 1 -0.0875 -10.3315 -1.4028 22 1 0.8345 -11.1208 0.6965 23 1 -1.0086 -9.5450 0.6980 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 3.1499 1.1384 0.5138 28 1 1.6085 2.0284 0.5137 29 1 0.7167 2.9619 -1.4945 30 1 1.1512 3.6674 -3.8383 31 1 3.1490 2.7553 -5.0041 32 1 4.6321 1.1952 -3.8087 33 1 0.4949 -2.3344 0.0005 34 1 2.8240 -3.6609 -0.8895 35 1 2.8241 -3.6609 0.8905 36 1 0.5762 -4.7085 0.8897 37 1 0.5769 -4.7081 -0.8903 38 1 2.5948 -6.1484 -0.8908 39 1 2.5947 -6.1493 0.8893 40 1 3.0647 -9.6913 -0.0027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352363805.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:32 Heat of formation + Delta-G solvation = 3.035635 kcal Electronic energy + Delta-G solvation = -20607.012992 eV Core-core repulsion = 17421.819036 eV Total energy + Delta-G solvation = -3185.193955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.56853 -39.62450 -35.95482 -35.10677 -33.35281 -32.66633 -32.07741 -30.87860 -27.90295 -26.95152 -25.59849 -23.66246 -23.09994 -22.10661 -20.56296 -19.60408 -17.90109 -17.11430 -16.61501 -16.28625 -16.09689 -16.01441 -15.24092 -14.59149 -14.42137 -14.24039 -13.77765 -13.65415 -13.43126 -13.20778 -13.05533 -12.71257 -12.25987 -12.01057 -11.89456 -11.74364 -11.60507 -10.87947 -10.66074 -10.56231 -10.09765 -9.92804 -9.81404 -9.57668 -9.42253 -9.23588 -9.08564 -8.84308 -8.46734 -8.34285 -5.98861 -4.01894 0.83997 1.09384 2.76184 3.32457 3.38680 3.41479 3.45061 3.70040 4.11677 4.15056 4.46541 4.49346 4.63923 4.77944 4.87884 4.90863 5.10046 5.18257 5.34767 5.36735 5.45232 5.48896 5.61574 5.76166 5.87878 5.88620 5.93154 6.24966 6.37470 6.48471 6.61984 6.68369 6.84860 7.06388 7.08660 7.67575 7.81092 7.91562 8.00424 8.16001 8.41384 8.86063 9.04878 9.61986 11.12471 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030151 B = 0.002832 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.446174 B = 9883.335208 C =10107.052949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.634 5.634 3 C 0.184 3.816 4 C 0.110 3.890 5 C -0.164 4.164 6 C -0.080 4.080 7 C -0.176 4.176 8 C 0.100 3.900 9 N -0.451 5.451 10 C 0.700 3.300 11 O -0.570 6.570 12 N -0.743 5.743 13 C 0.135 3.865 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.155 0.845 33 H 0.392 0.608 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.599 26.337 -4.071 27.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.372 5.372 3 C 0.059 3.941 4 C -0.030 4.030 5 C -0.185 4.185 6 C -0.106 4.106 7 C -0.196 4.196 8 C -0.058 4.058 9 N -0.160 5.160 10 C 0.401 3.599 11 O -0.446 6.446 12 N -0.399 5.399 13 C 0.012 3.988 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.560 4.560 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.120 0.880 28 H 0.109 0.891 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.172 0.828 33 H 0.227 0.773 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.985 25.557 -3.612 26.117 hybrid contribution -1.792 -0.235 -0.704 1.940 sum -5.778 25.322 -4.316 26.329 Atomic orbital electron populations 1.21730 0.80001 1.03073 1.01578 1.46969 1.05999 1.04643 1.79619 1.20094 0.99050 0.84374 0.90570 1.21815 0.90637 0.92943 0.97611 1.21970 1.00664 0.99793 0.96052 1.21551 0.96625 0.98017 0.94455 1.22189 0.96433 0.99489 1.01464 1.22889 0.98622 0.93743 0.90534 1.67669 1.18162 1.21409 1.08783 1.15949 0.85529 0.80284 0.78126 1.90954 1.11193 1.85820 1.56619 1.45533 1.09710 1.05166 1.79477 1.21491 0.95098 0.80369 1.01851 1.21881 0.97864 0.95334 1.00685 1.19025 0.95467 0.89161 0.97702 1.21210 0.92978 0.90962 1.50855 0.92685 1.25032 0.95118 0.99009 0.95333 1.69969 1.12515 1.20186 1.50598 0.86585 0.81253 0.82022 0.78066 1.20687 1.21211 1.19916 0.93041 0.91097 0.90888 0.87954 0.89081 0.85009 0.84993 0.84929 0.82786 0.77345 0.92056 0.91969 0.92838 0.92910 0.96256 0.96214 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.25 59.85 0.61 1.25 16 2 N -0.63 -7.73 2.86 -188.74 -0.54 -8.27 16 3 C 0.18 2.00 5.76 -5.19 -0.03 1.97 16 4 C 0.11 1.28 6.36 -82.59 -0.53 0.75 16 5 C -0.16 -1.41 9.72 -39.44 -0.38 -1.79 16 6 C -0.08 -0.63 10.18 -39.28 -0.40 -1.03 16 7 C -0.18 -1.50 10.11 -39.44 -0.40 -1.90 16 8 C 0.10 1.12 11.18 -17.55 -0.20 0.92 16 9 N -0.45 -6.39 10.27 -9.47 -0.10 -6.49 16 10 C 0.70 11.71 8.28 -86.92 -0.72 10.99 16 11 O -0.57 -11.93 15.92 5.29 0.08 -11.85 16 12 N -0.74 -11.78 5.42 -65.23 -0.35 -12.14 16 13 C 0.14 2.56 5.67 -4.04 -0.02 2.53 16 14 C -0.12 -2.42 5.27 -26.73 -0.14 -2.57 16 15 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 16 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 17 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 20 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.54 6.36 -51.93 -0.33 0.21 16 26 H 0.07 0.38 7.89 -51.93 -0.41 -0.03 16 27 H 0.10 1.34 7.42 -51.93 -0.39 0.96 16 28 H 0.09 0.62 7.79 -51.93 -0.40 0.21 16 29 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 30 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 31 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 32 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.39 5.07 6.20 -40.82 -0.25 4.82 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 341.89 15.07 5.15 5.15 Total: -1.00 -36.07 341.89 -8.77 -44.84 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.98 Total: 0.48 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -2.75 Total: -1.96 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.25 Total: -53.34 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.08 Total: -11.85 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.07 -8.77 -44.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352363805.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.873 kcal (2) G-P(sol) polarization free energy of solvation -36.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds