Wall clock time and date at job start Mon Mar 30 2020 01:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 120.00337 * 2 1 4 4 C 1.50703 * 109.46750 * 270.00111 * 3 2 1 5 5 C 1.38223 * 119.62264 * 95.02018 * 4 3 2 6 6 C 1.38628 * 119.16031 * 179.97438 * 5 4 3 7 7 C 1.38672 * 118.42475 * 359.97438 * 6 5 4 8 8 C 1.38186 * 119.15778 * 0.02562 * 7 6 5 9 9 N 1.31856 * 119.61279 * 274.99490 * 4 3 2 10 10 C 1.34774 * 120.00001 * 179.97438 * 2 1 3 11 11 O 1.21586 * 120.00431 * 180.02562 * 10 2 1 12 12 N 1.34781 * 119.99689 * 0.02562 * 10 2 1 13 13 C 1.46501 * 119.99569 * 179.97438 * 12 10 2 14 14 C 1.53000 * 109.46943 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47280 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47071 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00178 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99924 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00155 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00114 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47183 * 90.00311 * 20 18 16 22 22 H 1.48497 * 109.47141 * 210.00247 * 20 18 16 23 23 H 1.48501 * 109.47382 * 330.00213 * 20 18 16 24 24 H 1.09001 * 109.46777 * 90.00354 * 1 2 3 25 25 H 1.08993 * 109.47247 * 210.00197 * 1 2 3 26 26 H 1.08998 * 109.47016 * 330.00790 * 1 2 3 27 27 H 1.08989 * 109.47587 * 149.99777 * 3 2 1 28 28 H 1.08996 * 109.46786 * 29.99184 * 3 2 1 29 29 H 1.07995 * 120.41821 * 359.95030 * 5 4 3 30 30 H 1.08006 * 120.78822 * 180.02562 * 6 5 4 31 31 H 1.07993 * 120.42192 * 179.97438 * 7 6 5 32 32 H 1.08001 * 119.60956 * 180.27218 * 8 7 6 33 33 H 0.96999 * 120.00337 * 359.97438 * 12 10 2 34 34 H 1.08999 * 109.47313 * 299.99384 * 13 12 10 35 35 H 1.08997 * 109.47272 * 60.00074 * 13 12 10 36 36 H 1.08999 * 109.46931 * 299.99735 * 14 13 12 37 37 H 1.08997 * 109.47282 * 59.99828 * 14 13 12 38 38 H 1.08999 * 109.47063 * 299.99827 * 15 14 13 39 39 H 1.09004 * 109.46919 * 60.00214 * 15 14 13 40 40 H 0.97000 * 120.00447 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 6 1.5756 2.5853 -2.0300 6 6 1.8161 2.9794 -3.3371 7 6 2.9311 2.4703 -3.9855 8 6 3.7593 1.5927 -3.3121 9 7 3.4992 1.2392 -2.0685 10 6 2.1389 -1.1672 0.0005 11 8 3.3547 -1.1673 0.0010 12 7 1.4649 -2.3344 0.0005 13 6 2.1974 -3.6031 0.0005 14 6 1.2032 -4.7660 -0.0001 15 6 1.9682 -6.0911 -0.0008 16 6 0.9888 -7.2364 -0.0008 17 1 -0.0730 -7.0391 -0.0008 18 6 1.4484 -8.5364 -0.0018 19 7 2.7414 -8.7768 -0.0023 20 14 0.2345 -9.9562 -0.0026 21 1 -0.0875 -10.3315 -1.4028 22 1 0.8345 -11.1208 0.6965 23 1 -1.0086 -9.5450 0.6980 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 3.1499 1.1384 0.5138 28 1 1.6085 2.0284 0.5137 29 1 0.7167 2.9619 -1.4945 30 1 1.1512 3.6674 -3.8383 31 1 3.1490 2.7553 -5.0041 32 1 4.6321 1.1952 -3.8087 33 1 0.4949 -2.3344 0.0005 34 1 2.8240 -3.6609 -0.8895 35 1 2.8241 -3.6609 0.8905 36 1 0.5762 -4.7085 0.8897 37 1 0.5769 -4.7081 -0.8903 38 1 2.5948 -6.1484 -0.8908 39 1 2.5947 -6.1493 0.8893 40 1 3.0647 -9.6913 -0.0027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352363805.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:32 Heat of formation + Delta-G solvation = -21.858265 kcal Electronic energy + Delta-G solvation = -20608.092472 eV Core-core repulsion = 17421.819036 eV Total energy + Delta-G solvation = -3186.273436 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.48200 -40.67363 -37.24446 -36.50956 -35.22067 -33.51428 -33.18291 -32.34111 -28.94286 -28.34391 -26.79479 -24.81172 -24.35593 -23.04549 -22.30604 -20.86688 -19.07379 -18.47496 -17.85815 -17.45087 -17.14488 -16.88318 -16.49904 -16.34913 -15.75609 -15.47320 -15.04421 -14.54419 -14.36624 -14.24817 -14.03226 -13.77155 -13.70777 -13.44976 -13.33437 -12.79451 -12.73142 -12.58912 -12.49922 -12.35703 -11.68209 -11.59214 -11.27015 -11.11269 -10.78215 -10.55612 -10.38083 -10.15135 -9.98068 -9.52607 -8.19187 -6.31201 0.12974 0.42462 1.41633 1.43578 1.54521 1.70100 2.18117 2.42127 2.87110 3.13968 3.14367 3.40816 3.83131 4.03025 4.14133 4.19402 4.21202 4.27379 4.30073 4.43583 4.54043 4.56010 4.70610 4.80467 4.87300 4.90081 4.94334 4.98342 5.15186 5.21469 5.28273 5.47265 5.53597 5.55477 5.69881 5.83046 5.83604 5.89100 6.22076 6.85837 6.99707 7.18680 7.38395 7.60722 8.93204 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030151 B = 0.002832 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.446174 B = 9883.335208 C =10107.052949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.625 5.625 3 C 0.181 3.819 4 C 0.083 3.917 5 C -0.153 4.153 6 C -0.080 4.080 7 C -0.170 4.170 8 C 0.069 3.931 9 N -0.508 5.508 10 C 0.692 3.308 11 O -0.623 6.623 12 N -0.733 5.733 13 C 0.151 3.849 14 C -0.098 4.098 15 C 0.024 3.976 16 C -0.541 4.541 17 H 0.068 0.932 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.970 3.030 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.259 1.259 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.111 0.889 27 H 0.067 0.933 28 H 0.140 0.860 29 H 0.169 0.831 30 H 0.170 0.830 31 H 0.160 0.840 32 H 0.154 0.846 33 H 0.409 0.591 34 H 0.039 0.961 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.066 0.934 38 H -0.011 1.011 39 H -0.008 1.008 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.452 28.197 -4.501 30.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.362 5.362 3 C 0.057 3.943 4 C -0.056 4.056 5 C -0.173 4.173 6 C -0.106 4.106 7 C -0.190 4.190 8 C -0.088 4.088 9 N -0.218 5.218 10 C 0.393 3.607 11 O -0.503 6.503 12 N -0.390 5.390 13 C 0.026 3.974 14 C -0.136 4.136 15 C -0.014 4.014 16 C -0.579 4.579 17 H 0.086 0.914 18 C -0.202 4.202 19 N -0.577 5.577 20 Si 0.794 3.206 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.183 1.183 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.130 0.870 27 H 0.085 0.915 28 H 0.158 0.842 29 H 0.187 0.813 30 H 0.187 0.813 31 H 0.177 0.823 32 H 0.172 0.828 33 H 0.247 0.753 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.008 0.992 39 H 0.011 0.989 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.909 27.471 -4.046 28.872 hybrid contribution -0.571 -0.712 -0.604 1.094 sum -8.480 26.760 -4.649 28.454 Atomic orbital electron populations 1.22059 0.76902 1.05259 1.02761 1.47019 1.07836 1.03435 1.77914 1.20312 0.98393 0.84665 0.90892 1.21990 0.91256 0.94522 0.97875 1.22313 1.00582 0.98004 0.96413 1.22049 0.96459 0.97795 0.94275 1.22493 0.95978 0.98016 1.02481 1.23085 0.99894 0.95413 0.90422 1.67553 1.20291 1.23500 1.10431 1.16219 0.85085 0.81495 0.77887 1.90919 1.13746 1.86759 1.58848 1.45188 1.10353 1.03984 1.79519 1.21033 0.94597 0.81686 1.00067 1.21574 0.97397 0.92570 1.02060 1.18936 0.95188 0.92247 0.94987 1.21676 0.93868 0.91811 1.50500 0.91386 1.26063 0.97075 1.02364 0.94740 1.70124 1.14883 1.20987 1.51675 0.85379 0.78911 0.77869 0.78462 1.19818 1.21024 1.18251 0.92252 0.90691 0.87032 0.91464 0.84242 0.81312 0.81301 0.82251 0.82850 0.75317 0.94301 0.93603 0.91133 0.91551 0.99211 0.98944 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 10.25 127.77 1.31 2.20 16 2 N -0.62 -14.44 2.86 -869.33 -2.48 -16.92 16 3 C 0.18 3.76 5.76 85.63 0.49 4.26 16 4 C 0.08 1.86 6.36 42.55 0.27 2.13 16 5 C -0.15 -2.12 9.72 22.36 0.22 -1.90 16 6 C -0.08 -0.97 10.18 22.47 0.23 -0.74 16 7 C -0.17 -2.62 10.11 22.36 0.23 -2.39 16 8 C 0.07 1.60 11.18 84.67 0.95 2.54 16 9 N -0.51 -15.01 10.27 -183.88 -1.89 -16.90 16 10 C 0.69 23.53 8.28 179.05 1.48 25.01 16 11 O -0.62 -27.66 15.92 -3.99 -0.06 -27.72 16 12 N -0.73 -23.12 5.42 -478.53 -2.59 -25.71 16 13 C 0.15 5.91 5.67 86.38 0.49 6.40 16 14 C -0.10 -3.97 5.27 30.59 0.16 -3.81 16 15 C 0.02 1.30 4.97 29.85 0.15 1.45 16 16 C -0.54 -30.73 9.11 25.60 0.23 -30.50 16 17 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 18 C 0.00 -0.29 5.46 84.65 0.46 0.18 16 19 N -0.94 -58.33 13.29 21.45 0.28 -58.04 16 20 Si 0.97 44.29 29.54 68.60 2.03 46.31 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.07 0.89 6.36 -2.39 -0.02 0.87 16 26 H 0.11 0.57 7.89 -2.39 -0.02 0.55 16 27 H 0.07 1.86 7.42 -2.39 -0.02 1.85 16 28 H 0.14 1.41 7.79 -2.39 -0.02 1.40 16 29 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 30 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 31 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 32 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.41 9.88 6.20 -92.71 -0.58 9.30 16 34 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 38 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 39 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 40 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -83.64 341.89 2.40 -81.23 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.45 Total: 12.94 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 6.67 Total: 4.81 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -6.68 Total: -117.58 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.06 Total: -27.72 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -83.64 2.40 -81.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352363805.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.376 kcal (2) G-P(sol) polarization free energy of solvation -83.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds