Wall clock time and date at job start Mon Mar 30 2020 02:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47357 * 2 1 4 4 C 1.52999 * 109.47272 * 239.99605 * 2 1 3 5 5 C 1.50697 * 109.46826 * 60.00278 * 4 2 1 6 6 H 1.08001 * 120.00334 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00116 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99831 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00188 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47206 * 89.99677 * 9 7 5 11 11 H 1.48495 * 109.46994 * 209.99811 * 9 7 5 12 12 H 1.48508 * 109.46982 * 330.00279 * 9 7 5 13 13 C 1.53003 * 109.46809 * 120.00109 * 2 1 3 14 14 N 1.46907 * 109.47271 * 299.99500 * 13 2 1 15 15 C 1.46894 * 111.00347 * 180.02562 * 14 13 2 16 16 C 1.52989 * 109.47515 * 180.02562 * 15 14 13 17 17 N 1.46499 * 109.47291 * 179.97438 * 16 15 14 18 18 C 1.34705 * 126.73233 * 125.00193 * 17 16 15 19 19 N 1.30517 * 108.34421 * 180.02562 * 18 17 16 20 20 C 1.34179 * 109.80140 * 359.97438 * 19 18 17 21 21 C 1.43205 * 125.67755 * 179.97438 * 20 19 18 22 22 N 9.97564 * 95.44038 * 115.93565 * 2 1 3 23 23 N 1.31723 * 108.65166 * 0.26450 * 20 19 18 24 24 H 1.09001 * 109.47131 * 300.00482 * 1 2 3 25 25 H 1.09006 * 109.46812 * 59.99860 * 1 2 3 26 26 H 1.08995 * 109.47225 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47018 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.46979 * 299.99842 * 3 2 1 29 29 H 1.08994 * 109.47130 * 60.00279 * 3 2 1 30 30 H 1.09002 * 109.47245 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.47271 * 300.00516 * 4 2 1 32 32 H 0.96994 * 119.99906 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47175 * 179.97438 * 13 2 1 34 34 H 1.08995 * 109.47616 * 59.99762 * 13 2 1 35 35 H 1.00898 * 110.99949 * 303.95696 * 14 13 2 36 36 H 1.09000 * 109.47371 * 59.99479 * 15 14 13 37 37 H 1.09005 * 109.47109 * 300.00396 * 15 14 13 38 38 H 1.09000 * 109.47627 * 59.99145 * 16 15 14 39 39 H 1.09005 * 109.46855 * 300.00061 * 16 15 14 40 40 H 1.07997 * 125.82766 * 359.97327 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4796 6 1 0.9165 0.8670 -2.3806 7 6 1.8704 -0.4823 -3.7320 8 7 2.6257 -1.5522 -3.8526 9 14 1.2484 0.3987 -5.2572 10 1 2.2273 1.4396 -5.6614 11 1 1.0826 -0.5804 -6.3613 12 1 -0.0593 1.0373 -4.9612 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0287 2.4488 15 6 2.0217 -0.6945 3.6704 16 6 1.4923 0.0533 4.8955 17 7 1.9619 -0.6110 6.1139 18 6 2.6446 -0.0453 7.1280 19 7 2.8803 -0.9621 8.0265 20 6 2.3634 -2.1340 7.6265 21 6 2.4267 -3.3663 8.3533 22 7 2.4758 -4.3433 8.9305 23 7 1.7935 -1.9638 6.4512 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1301 -0.7217 -1.2489 31 1 1.6767 -1.7490 -1.2492 32 1 2.8600 -1.8836 -4.7335 33 1 3.1300 -0.7217 1.2491 34 1 1.6766 -1.7489 1.2493 35 1 1.8198 0.9436 2.4402 36 1 3.1116 -0.6941 3.6870 37 1 1.6586 -1.7221 3.6874 38 1 0.4024 0.0526 4.8788 39 1 1.8551 1.0811 4.8787 40 1 2.9462 0.9901 7.1870 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353040712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:34 Heat of formation + Delta-G solvation = 114.200827 kcal Electronic energy + Delta-G solvation = -20330.737061 eV Core-core repulsion = 17182.656341 eV Total energy + Delta-G solvation = -3148.080720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.71659 -38.01859 -37.07565 -35.80092 -33.66642 -32.19308 -32.04001 -29.22964 -26.99922 -26.43213 -25.68426 -24.50352 -23.15431 -22.29234 -21.93580 -19.19340 -18.05499 -17.03487 -16.60697 -16.24802 -15.75255 -15.63988 -14.92183 -14.44109 -14.14166 -14.01564 -13.67358 -13.63869 -13.31882 -13.07498 -12.78472 -12.66487 -12.54664 -12.05478 -11.79209 -11.60511 -11.04780 -10.94676 -10.82994 -10.73724 -10.57339 -10.49482 -10.36208 -10.23801 -10.11916 -9.77772 -9.11241 -8.90893 -8.39576 -8.36377 -6.00803 -4.01395 0.65058 1.48974 1.68603 2.09285 2.90407 3.08399 3.29813 3.37015 3.39246 3.85393 4.12284 4.25600 4.45316 4.62777 4.68352 4.87994 5.25032 5.34997 5.37959 5.50280 5.53811 5.64117 5.67062 5.86632 6.11067 6.13758 6.20962 6.38541 6.55020 6.66378 6.74231 6.87983 6.98446 7.11812 7.16570 7.23481 7.30001 7.41693 7.64086 7.78027 7.98830 8.42273 9.03927 9.61746 11.10828 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.038560 B = 0.002588 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.958351 B =10817.352486 C =11220.523231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.058 4.058 3 C -0.130 4.130 4 C 0.033 3.967 5 C -0.508 4.508 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.072 3.928 14 N -0.682 5.682 15 C 0.045 3.955 16 C 0.126 3.874 17 N -0.359 5.359 18 C 0.271 3.729 19 N -0.513 5.513 20 C 0.292 3.708 21 C 0.311 3.689 22 N -0.364 5.364 23 N -0.249 5.249 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.065 0.935 29 H 0.033 0.967 30 H 0.013 0.987 31 H 0.015 0.985 32 H 0.259 0.741 33 H 0.026 0.974 34 H 0.069 0.931 35 H 0.339 0.661 36 H 0.034 0.966 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.774 7.025 19.501 20.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.058 4.058 3 C -0.187 4.187 4 C -0.005 4.005 5 C -0.546 4.546 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.056 4.056 14 N -0.315 5.315 15 C -0.086 4.086 16 C 0.005 3.995 17 N -0.151 5.151 18 C -0.026 4.026 19 N -0.241 5.241 20 C 0.010 3.990 21 C -0.009 4.009 22 N -0.043 5.043 23 N -0.083 5.083 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.031 0.969 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.158 0.842 36 H 0.053 0.947 37 H 0.106 0.894 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -1.436 4.666 20.056 20.642 hybrid contribution 0.755 1.342 -1.357 2.052 sum -0.681 6.008 18.699 19.653 Atomic orbital electron populations 1.21612 0.94872 1.00711 1.00234 1.20640 0.95951 0.95003 0.94250 1.21781 0.99733 0.96685 1.00499 1.19131 0.95919 0.95275 0.90145 1.21212 1.30892 1.11972 0.90556 0.92264 1.25027 0.95397 0.95088 0.99112 1.69962 1.37251 1.23080 1.23378 0.86656 0.79223 0.79411 0.83077 1.20817 1.21357 1.19895 1.22141 0.96547 0.98276 0.88683 1.60524 1.63630 1.06450 1.00871 1.22164 0.97625 0.99904 0.88875 1.22065 1.02261 0.95497 0.79680 1.50725 1.40773 1.05827 1.17784 1.26221 0.92245 1.00596 0.83504 1.70562 1.25451 0.98078 1.30015 1.18121 1.00330 0.89519 0.91018 1.22912 0.94503 0.90384 0.93096 1.81314 1.06502 1.09257 1.07223 1.78536 1.21845 0.94497 1.13374 0.93909 0.92564 0.94088 0.94053 0.91564 0.94831 0.96907 0.96618 0.93106 0.95525 0.91239 0.84168 0.94740 0.89441 0.87398 0.87294 0.75085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 8.06 37.16 0.30 -1.78 16 2 C -0.06 -1.06 0.60 -154.51 -0.09 -1.15 16 3 C -0.13 -2.14 7.89 37.16 0.29 -1.85 16 4 C 0.03 0.79 4.04 -27.88 -0.11 0.68 16 5 C -0.51 -13.40 7.65 -34.44 -0.26 -13.67 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.22 16 7 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 8 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 C 0.07 1.10 4.65 -3.82 -0.02 1.08 16 14 N -0.68 -7.64 5.71 -113.78 -0.65 -8.29 16 15 C 0.04 0.41 5.89 -3.83 -0.02 0.39 16 16 C 0.13 0.72 6.81 -4.05 -0.03 0.70 16 17 N -0.36 -2.64 3.70 -62.64 -0.23 -2.87 16 18 C 0.27 1.56 12.61 -90.67 -1.14 0.42 16 19 N -0.51 -4.73 11.21 -13.78 -0.15 -4.88 16 20 C 0.29 3.07 7.82 -158.51 -1.24 1.83 16 21 C 0.31 3.50 16.01 -22.48 -0.36 3.14 16 22 N -0.36 -4.55 18.54 41.83 0.78 -3.77 16 23 N -0.25 -2.63 12.61 30.96 0.39 -2.24 16 24 H 0.04 0.66 7.60 -51.93 -0.39 0.26 16 25 H 0.06 1.09 6.62 -51.93 -0.34 0.75 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 29 H 0.03 0.44 6.57 -51.93 -0.34 0.10 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.34 3.31 6.77 -39.29 -0.27 3.05 16 36 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.11 0.26 8.09 -51.93 -0.42 -0.16 16 40 H 0.23 0.11 8.06 -52.49 -0.42 -0.32 16 LS Contribution 340.99 15.07 5.14 5.14 Total: -1.00 -31.79 340.99 -7.57 -39.36 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -5.77 Total: -4.09 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -2.78 Total: -8.81 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.87 Total: -47.65 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.79 -7.57 -39.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353040712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.558 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds