Wall clock time and date at job start Mon Mar 30 2020 02:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47357 * 2 1 4 4 C 1.52999 * 109.47272 * 239.99605 * 2 1 3 5 5 C 1.50697 * 109.46826 * 60.00278 * 4 2 1 6 6 H 1.08001 * 120.00334 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00116 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99831 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00188 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47206 * 89.99677 * 9 7 5 11 11 H 1.48495 * 109.46994 * 209.99811 * 9 7 5 12 12 H 1.48508 * 109.46982 * 330.00279 * 9 7 5 13 13 C 1.53003 * 109.46809 * 120.00109 * 2 1 3 14 14 N 1.46907 * 109.47271 * 299.99500 * 13 2 1 15 15 C 1.46894 * 111.00347 * 180.02562 * 14 13 2 16 16 C 1.52989 * 109.47515 * 180.02562 * 15 14 13 17 17 N 1.46499 * 109.47291 * 179.97438 * 16 15 14 18 18 C 1.34705 * 126.73233 * 125.00193 * 17 16 15 19 19 N 1.30517 * 108.34421 * 180.02562 * 18 17 16 20 20 C 1.34179 * 109.80140 * 359.97438 * 19 18 17 21 21 C 1.43205 * 125.67755 * 179.97438 * 20 19 18 22 22 N 9.97564 * 95.44038 * 115.93565 * 2 1 3 23 23 N 1.31723 * 108.65166 * 0.26450 * 20 19 18 24 24 H 1.09001 * 109.47131 * 300.00482 * 1 2 3 25 25 H 1.09006 * 109.46812 * 59.99860 * 1 2 3 26 26 H 1.08995 * 109.47225 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47018 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.46979 * 299.99842 * 3 2 1 29 29 H 1.08994 * 109.47130 * 60.00279 * 3 2 1 30 30 H 1.09002 * 109.47245 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.47271 * 300.00516 * 4 2 1 32 32 H 0.96994 * 119.99906 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47175 * 179.97438 * 13 2 1 34 34 H 1.08995 * 109.47616 * 59.99762 * 13 2 1 35 35 H 1.00898 * 110.99949 * 303.95696 * 14 13 2 36 36 H 1.09000 * 109.47371 * 59.99479 * 15 14 13 37 37 H 1.09005 * 109.47109 * 300.00396 * 15 14 13 38 38 H 1.09000 * 109.47627 * 59.99145 * 16 15 14 39 39 H 1.09005 * 109.46855 * 300.00061 * 16 15 14 40 40 H 1.07997 * 125.82766 * 359.97327 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4796 6 1 0.9165 0.8670 -2.3806 7 6 1.8704 -0.4823 -3.7320 8 7 2.6257 -1.5522 -3.8526 9 14 1.2484 0.3987 -5.2572 10 1 2.2273 1.4396 -5.6614 11 1 1.0826 -0.5804 -6.3613 12 1 -0.0593 1.0373 -4.9612 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0287 2.4488 15 6 2.0217 -0.6945 3.6704 16 6 1.4923 0.0533 4.8955 17 7 1.9619 -0.6110 6.1139 18 6 2.6446 -0.0453 7.1280 19 7 2.8803 -0.9621 8.0265 20 6 2.3634 -2.1340 7.6265 21 6 2.4267 -3.3663 8.3533 22 7 2.4758 -4.3433 8.9305 23 7 1.7935 -1.9638 6.4512 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1301 -0.7217 -1.2489 31 1 1.6767 -1.7490 -1.2492 32 1 2.8600 -1.8836 -4.7335 33 1 3.1300 -0.7217 1.2491 34 1 1.6766 -1.7489 1.2493 35 1 1.8198 0.9436 2.4402 36 1 3.1116 -0.6941 3.6870 37 1 1.6586 -1.7221 3.6874 38 1 0.4024 0.0526 4.8788 39 1 1.8551 1.0811 4.8787 40 1 2.9462 0.9901 7.1870 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353040712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:33 Heat of formation + Delta-G solvation = 93.959976 kcal Electronic energy + Delta-G solvation = -20331.614770 eV Core-core repulsion = 17182.656341 eV Total energy + Delta-G solvation = -3148.958429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.31364 -39.28574 -37.97396 -36.77502 -34.90130 -33.86170 -32.67346 -30.16094 -28.78192 -27.83811 -26.80871 -25.61979 -24.28767 -23.36253 -22.64096 -19.86621 -19.52374 -18.31911 -17.65481 -17.29387 -16.62937 -16.58299 -16.17017 -15.70271 -15.21612 -15.17334 -14.70665 -14.58413 -14.37067 -14.18495 -14.06058 -13.85621 -13.70133 -13.40799 -13.13824 -12.74600 -12.67177 -12.49083 -12.23082 -12.14223 -12.08860 -11.89024 -11.36961 -11.35149 -11.12869 -10.88263 -10.82649 -10.64235 -10.49802 -9.38066 -8.13410 -6.20340 -0.05137 0.90409 1.12209 1.28809 1.41839 1.42713 1.53028 2.21855 2.29545 2.44523 3.18519 3.20952 3.54610 3.78828 4.01162 4.08455 4.20409 4.26167 4.41350 4.42597 4.63422 4.73056 4.75666 4.85042 4.92080 4.97548 5.00712 5.13220 5.25403 5.27292 5.55131 5.57960 5.63158 5.65936 5.72552 5.89853 5.93894 5.97210 6.03155 6.36967 6.55590 6.71242 6.95835 7.47339 8.98993 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.038560 B = 0.002588 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.958351 B =10817.352486 C =11220.523231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.054 4.054 3 C -0.123 4.123 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.069 0.931 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.956 3.044 10 H -0.274 1.274 11 H -0.290 1.290 12 H -0.261 1.261 13 C 0.085 3.915 14 N -0.673 5.673 15 C 0.048 3.952 16 C 0.133 3.867 17 N -0.359 5.359 18 C 0.293 3.707 19 N -0.540 5.540 20 C 0.280 3.720 21 C 0.324 3.676 22 N -0.396 5.396 23 N -0.282 5.282 24 H 0.076 0.924 25 H 0.037 0.963 26 H 0.025 0.975 27 H 0.037 0.963 28 H 0.045 0.955 29 H 0.078 0.922 30 H -0.017 1.017 31 H -0.020 1.020 32 H 0.259 0.741 33 H 0.020 0.980 34 H 0.050 0.950 35 H 0.354 0.646 36 H 0.034 0.966 37 H 0.060 0.940 38 H 0.111 0.889 39 H 0.159 0.841 40 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.414 10.496 20.588 23.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.055 4.055 3 C -0.181 4.181 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.087 0.913 7 C -0.204 4.204 8 N -0.582 5.582 9 Si 0.782 3.218 10 H -0.200 1.200 11 H -0.216 1.216 12 H -0.185 1.185 13 C -0.045 4.045 14 N -0.307 5.307 15 C -0.082 4.082 16 C 0.012 3.988 17 N -0.151 5.151 18 C -0.002 4.002 19 N -0.268 5.268 20 C -0.001 4.001 21 C 0.005 3.995 22 N -0.076 5.076 23 N -0.116 5.116 24 H 0.095 0.905 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.002 0.998 31 H -0.002 1.002 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.068 0.932 35 H 0.175 0.825 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.129 0.871 39 H 0.176 0.824 40 H 0.304 0.696 Dipole moment (debyes) X Y Z Total from point charges -2.089 8.166 21.157 22.775 hybrid contribution 0.970 0.289 -1.686 1.967 sum -1.118 8.455 19.471 21.257 Atomic orbital electron populations 1.21532 0.94218 0.99956 1.00897 1.20483 0.96330 0.95904 0.92743 1.21705 0.99523 0.95124 1.01711 1.19049 0.93974 0.94048 0.93098 1.21635 1.30039 1.11895 0.91324 0.91295 1.25952 0.95810 0.95904 1.02713 1.70114 1.39084 1.24986 1.23985 0.85574 0.79189 0.78182 0.78892 1.19993 1.21614 1.18523 1.21770 0.95935 0.97343 0.89435 1.60345 1.63357 1.07000 0.99950 1.22088 0.97611 0.99084 0.89464 1.22181 1.02540 0.96762 0.77286 1.50807 1.40958 1.04758 1.18556 1.27296 0.89560 1.01799 0.81527 1.70561 1.26496 0.98155 1.31631 1.18064 1.01196 0.89650 0.91217 1.23137 0.93533 0.90409 0.92455 1.81305 1.07728 1.10153 1.08371 1.78469 1.22620 0.96965 1.13539 0.90546 0.94369 0.95610 0.94407 0.93587 0.90309 0.99826 1.00180 0.93259 0.96197 0.93187 0.82497 0.94783 0.92099 0.87071 0.82374 0.69633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.74 8.06 71.98 0.58 -3.16 16 2 C -0.05 -1.94 0.60 -52.18 -0.03 -1.97 16 3 C -0.12 -3.80 7.89 71.98 0.57 -3.23 16 4 C 0.04 1.79 4.04 29.85 0.12 1.91 16 5 C -0.51 -27.35 7.65 25.60 0.20 -27.16 16 6 H 0.07 3.49 5.68 -2.91 -0.02 3.48 16 7 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 8 N -0.94 -57.00 13.29 21.45 0.28 -56.72 16 9 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 13 C 0.08 2.53 4.65 86.30 0.40 2.93 16 14 N -0.67 -13.05 5.71 -513.90 -2.94 -15.99 16 15 C 0.05 0.76 5.89 86.30 0.51 1.26 16 16 C 0.13 0.95 6.81 86.38 0.59 1.54 16 17 N -0.36 -4.12 3.70 -352.09 -1.30 -5.42 16 18 C 0.29 2.18 12.61 180.36 2.27 4.45 16 19 N -0.54 -8.80 11.21 -197.52 -2.22 -11.02 16 20 C 0.28 5.70 7.82 135.87 1.06 6.76 16 21 C 0.32 7.44 16.01 88.33 1.41 8.86 16 22 N -0.40 -10.21 18.54 19.00 0.35 -9.85 16 23 N -0.28 -5.65 12.61 -55.97 -0.71 -6.35 16 24 H 0.08 2.10 7.60 -2.39 -0.02 2.08 16 25 H 0.04 1.43 6.62 -2.38 -0.02 1.41 16 26 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 28 H 0.05 1.60 6.62 -2.39 -0.02 1.59 16 29 H 0.08 1.70 6.57 -2.39 -0.02 1.69 16 30 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 31 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 32 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 33 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.35 5.18 6.77 -89.70 -0.61 4.58 16 36 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.16 -0.34 8.09 -2.38 -0.02 -0.36 16 40 H 0.29 -1.59 8.06 -2.91 -0.02 -1.62 16 Total: -1.00 -74.21 340.99 4.09 -70.12 By element: Atomic # 1 Polarization: -3.00 SS G_CDS: 0.44 Total: -2.55 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: 8.14 Total: -7.75 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -6.52 Total: -105.35 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -74.21 4.09 -70.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353040712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.082 kcal (2) G-P(sol) polarization free energy of solvation -74.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds