Wall clock time and date at job start Mon Mar 30 2020 01:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46905 * 110.99863 * 2 1 4 4 C 1.46892 * 111.00122 * 123.94850 * 2 1 3 5 5 C 1.52996 * 109.47215 * 170.00261 * 4 2 1 6 6 N 1.46508 * 109.47291 * 180.02562 * 5 4 2 7 7 C 1.46498 * 119.99684 * 89.99905 * 6 5 4 8 8 C 1.50694 * 109.47252 * 264.89530 * 7 6 5 9 9 C 1.38232 * 119.61674 * 95.55270 * 8 7 6 10 10 C 1.38627 * 119.15759 * 179.74675 * 9 8 7 11 11 C 1.38677 * 118.42610 * 0.47412 * 10 9 8 12 12 C 1.38183 * 119.15695 * 359.50711 * 11 10 9 13 13 N 1.31863 * 119.62225 * 275.53163 * 8 7 6 14 14 C 1.34773 * 119.99916 * 270.00299 * 6 5 4 15 15 O 1.21691 * 120.00169 * 4.99349 * 14 6 5 16 16 C 1.46381 * 119.99921 * 184.99744 * 14 6 5 17 17 H 1.07999 * 119.99443 * 349.11656 * 16 14 6 18 18 C 1.40045 * 119.99836 * 169.11457 * 16 14 6 19 19 N 1.30673 * 119.99913 * 172.61517 * 18 16 14 20 20 Si 1.86803 * 120.00297 * 352.61511 * 18 16 14 21 21 H 1.48494 * 109.46957 * 85.89757 * 20 18 16 22 22 H 1.48497 * 109.46951 * 205.89949 * 20 18 16 23 23 H 1.48501 * 109.46745 * 325.89675 * 20 18 16 24 24 H 1.08993 * 109.47559 * 296.05001 * 1 2 3 25 25 H 1.09006 * 109.47039 * 56.05232 * 1 2 3 26 26 H 1.09004 * 109.47138 * 176.04692 * 1 2 3 27 27 H 1.08995 * 109.47254 * 183.95567 * 3 2 1 28 28 H 1.09007 * 109.46763 * 303.94915 * 3 2 1 29 29 H 1.09000 * 109.47358 * 63.94634 * 3 2 1 30 30 H 1.09001 * 109.47244 * 50.00243 * 4 2 1 31 31 H 1.09001 * 109.47463 * 290.00565 * 4 2 1 32 32 H 1.08995 * 109.47360 * 60.00469 * 5 4 2 33 33 H 1.08997 * 109.47446 * 299.99805 * 5 4 2 34 34 H 1.09007 * 109.46862 * 144.90049 * 7 6 5 35 35 H 1.08994 * 109.47467 * 24.90404 * 7 6 5 36 36 H 1.07991 * 120.42046 * 359.95941 * 9 8 7 37 37 H 1.08008 * 120.78595 * 180.23197 * 10 9 8 38 38 H 1.07992 * 120.41933 * 179.77782 * 11 10 9 39 39 H 1.07995 * 119.61489 * 180.25275 * 12 11 10 40 40 H 0.96996 * 120.00002 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7658 1.1376 5 6 3.5044 -0.9551 0.9704 6 7 4.0294 -1.7195 2.1047 7 6 4.0861 -3.1819 2.0390 8 6 2.8540 -3.7619 2.6841 9 6 1.7697 -4.1067 1.8991 10 6 0.6432 -4.6445 2.5019 11 6 0.6454 -4.8069 3.8792 12 6 1.7665 -4.4395 4.5986 13 7 2.8227 -3.9352 3.9910 14 6 4.4599 -1.0772 3.2085 15 8 4.3293 0.1291 3.3005 16 6 5.0849 -1.8308 4.2968 17 1 5.0447 -2.9100 4.2988 18 6 5.7349 -1.1522 5.3352 19 7 6.1660 -1.8119 6.3775 20 14 5.9855 0.6959 5.2304 21 1 4.7792 1.3892 5.7493 22 1 7.1666 1.0821 6.0435 23 1 6.2101 1.0854 3.8151 24 1 -0.3634 0.4513 0.9232 25 1 -0.3633 0.5739 -0.8525 26 1 -0.3633 -1.0253 -0.0708 27 1 3.0827 1.3433 -0.0709 28 1 1.5897 1.9163 -0.8525 29 1 1.7042 1.8725 0.9232 30 1 1.5090 -1.7405 1.1757 31 1 1.7974 -0.2246 2.0628 32 1 3.9909 0.0195 0.9324 33 1 3.7024 -1.4964 0.0453 34 1 4.9726 -3.5351 2.5659 35 1 4.1333 -3.4972 0.9967 36 1 1.8012 -3.9622 0.8294 37 1 -0.2174 -4.9266 1.9134 38 1 -0.2165 -5.2194 4.3825 39 1 1.7778 -4.5667 5.6710 40 1 6.6165 -1.3420 7.0966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356596042.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:20 Heat of formation + Delta-G solvation = 8.032671 kcal Electronic energy + Delta-G solvation = -22315.084356 eV Core-core repulsion = 19130.107088 eV Total energy + Delta-G solvation = -3184.977268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.90471 -38.30783 -36.93217 -34.54407 -32.72935 -32.10780 -31.27830 -29.38059 -27.43707 -26.43510 -25.91128 -23.55639 -23.08866 -21.78841 -20.89212 -19.03004 -16.92499 -16.42429 -16.16143 -15.57898 -15.45158 -15.20241 -15.02318 -14.78607 -14.31031 -13.82056 -13.45918 -13.21138 -12.95772 -12.72671 -12.42468 -12.21774 -12.15769 -11.73794 -11.71845 -11.58695 -11.44729 -11.37189 -11.16502 -10.82769 -10.37325 -10.26997 -9.53956 -9.37296 -8.91553 -8.89234 -8.64670 -8.24351 -7.77348 -7.55196 -6.47527 -4.64526 1.42437 1.64235 3.50122 3.55752 3.82807 3.90441 4.19930 4.26968 4.54503 4.73620 4.77033 5.00479 5.14086 5.25244 5.30016 5.31180 5.43687 5.47418 5.54162 5.63686 5.73807 5.77984 5.82885 5.85969 5.94969 5.99916 6.06741 6.12782 6.27495 6.30550 6.42837 6.48754 6.53094 7.03307 7.07644 7.17341 7.21414 7.70661 8.04877 8.51978 8.60291 8.84709 9.23385 10.14853 10.52543 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012148 B = 0.008656 C = 0.005616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.281314 B = 3233.948882 C = 4984.464125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.023 3.977 4 C 0.038 3.962 5 C 0.130 3.870 6 N -0.626 5.626 7 C 0.172 3.828 8 C 0.123 3.877 9 C -0.171 4.171 10 C -0.085 4.085 11 C -0.186 4.186 12 C 0.100 3.900 13 N -0.436 5.436 14 C 0.547 3.453 15 O -0.618 6.618 16 C -0.511 4.511 17 H 0.107 0.893 18 C 0.100 3.900 19 N -0.825 5.825 20 Si 0.960 3.040 21 H -0.284 1.284 22 H -0.326 1.326 23 H -0.260 1.260 24 H 0.022 0.978 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.026 0.974 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.151 0.849 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.384 -4.510 -10.414 15.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.270 5.270 3 C -0.126 4.126 4 C -0.091 4.091 5 C 0.006 3.994 6 N -0.359 5.359 7 C 0.047 3.953 8 C -0.017 4.017 9 C -0.191 4.191 10 C -0.111 4.111 11 C -0.206 4.206 12 C -0.057 4.057 13 N -0.144 5.144 14 C 0.358 3.642 15 O -0.511 6.511 16 C -0.546 4.546 17 H 0.125 0.875 18 C -0.118 4.118 19 N -0.456 5.456 20 Si 0.794 3.206 21 H -0.211 1.211 22 H -0.258 1.258 23 H -0.186 1.186 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.168 0.832 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.456 -3.956 -10.145 14.422 hybrid contribution -1.322 0.825 0.443 1.620 sum -10.779 -3.131 -9.703 14.837 Atomic orbital electron populations 1.22334 0.88017 1.01764 1.00077 1.62032 1.07318 1.14046 1.43627 1.22415 1.01389 0.88756 1.00008 1.22685 0.97425 0.97776 0.91257 1.21100 0.91764 0.97675 0.88888 1.47560 1.67056 1.04097 1.17162 1.20181 0.94831 0.81570 0.98702 1.22093 0.96311 0.93509 0.89827 1.21959 0.94563 1.01524 1.01063 1.21438 0.97807 0.97018 0.94860 1.22087 1.00118 1.03386 0.95043 1.22881 0.88751 0.93557 1.00533 1.67815 1.27188 1.09139 1.10306 1.18451 0.78074 0.86200 0.81454 1.90196 1.63885 1.16377 1.80661 1.20979 1.33686 0.96792 1.03148 0.87532 1.25777 0.91378 1.01667 0.92950 1.69583 1.30664 1.39043 1.06261 0.85343 0.75225 0.81862 0.78165 1.21088 1.25776 1.18566 0.95973 0.91711 0.91720 0.90828 0.91979 0.95527 0.91100 0.94344 0.90624 0.91559 0.87982 0.90596 0.85383 0.85653 0.85580 0.83188 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.57 60.06 0.57 0.90 16 2 N -0.55 -8.06 5.02 -251.26 -1.26 -9.32 16 3 C 0.02 0.32 9.32 60.07 0.56 0.88 16 4 C 0.04 0.65 5.28 -3.83 -0.02 0.63 16 5 C 0.13 2.39 5.33 -4.04 -0.02 2.37 16 6 N -0.63 -13.33 2.47 -176.73 -0.44 -13.76 16 7 C 0.17 3.12 5.47 -5.20 -0.03 3.09 16 8 C 0.12 2.18 6.30 -82.58 -0.52 1.66 16 9 C -0.17 -2.44 8.03 -39.44 -0.32 -2.75 16 10 C -0.09 -1.09 10.18 -39.28 -0.40 -1.48 16 11 C -0.19 -2.48 10.11 -39.44 -0.40 -2.88 16 12 C 0.10 1.67 11.18 -17.55 -0.20 1.47 16 13 N -0.44 -8.74 8.87 -9.47 -0.08 -8.82 16 14 C 0.55 14.55 7.30 -12.99 -0.09 14.45 16 15 O -0.62 -18.02 11.71 5.20 0.06 -17.96 16 16 C -0.51 -14.40 8.82 -35.63 -0.31 -14.72 16 17 H 0.11 3.02 5.41 -52.49 -0.28 2.74 16 18 C 0.10 2.89 5.52 -17.37 -0.10 2.79 16 19 N -0.83 -23.83 13.92 55.55 0.77 -23.05 16 20 Si 0.96 26.05 25.97 -169.99 -4.41 21.64 16 21 H -0.28 -7.99 7.11 56.52 0.40 -7.59 16 22 H -0.33 -8.42 7.11 56.52 0.40 -8.02 16 23 H -0.26 -7.36 6.41 56.52 0.36 -7.00 16 24 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 25 H 0.06 0.68 8.12 -51.93 -0.42 0.25 16 26 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 27 H 0.07 1.10 6.47 -51.93 -0.34 0.76 16 28 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 1.16 6.10 -51.93 -0.32 0.85 16 31 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 32 H 0.08 1.53 5.91 -51.93 -0.31 1.22 16 33 H 0.07 1.03 7.86 -51.93 -0.41 0.62 16 34 H 0.10 2.03 6.34 -51.92 -0.33 1.70 16 35 H 0.08 1.07 7.73 -51.93 -0.40 0.67 16 36 H 0.13 1.54 7.93 -52.49 -0.42 1.12 16 37 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 38 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.15 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.28 7.45 8.29 -40.82 -0.34 7.11 16 LS Contribution 325.97 15.07 4.91 4.91 Total: -1.00 -33.70 325.97 -7.49 -41.20 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.77 Total: -1.24 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -1.27 Total: 6.41 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -1.01 Total: -54.96 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: 0.06 Total: -17.96 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -4.41 Total: 21.64 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.70 -7.49 -41.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356596042.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.230 kcal (2) G-P(sol) polarization free energy of solvation -33.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds