Wall clock time and date at job start Mon Mar 30 2020 01:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46905 * 110.99863 * 2 1 4 4 C 1.46892 * 111.00122 * 123.94850 * 2 1 3 5 5 C 1.52996 * 109.47215 * 170.00261 * 4 2 1 6 6 N 1.46508 * 109.47291 * 180.02562 * 5 4 2 7 7 C 1.46498 * 119.99684 * 89.99905 * 6 5 4 8 8 C 1.50694 * 109.47252 * 264.89530 * 7 6 5 9 9 C 1.38232 * 119.61674 * 95.55270 * 8 7 6 10 10 C 1.38627 * 119.15759 * 179.74675 * 9 8 7 11 11 C 1.38677 * 118.42610 * 0.47412 * 10 9 8 12 12 C 1.38183 * 119.15695 * 359.50711 * 11 10 9 13 13 N 1.31863 * 119.62225 * 275.53163 * 8 7 6 14 14 C 1.34773 * 119.99916 * 270.00299 * 6 5 4 15 15 O 1.21691 * 120.00169 * 4.99349 * 14 6 5 16 16 C 1.46381 * 119.99921 * 184.99744 * 14 6 5 17 17 H 1.07999 * 119.99443 * 349.11656 * 16 14 6 18 18 C 1.40045 * 119.99836 * 169.11457 * 16 14 6 19 19 N 1.30673 * 119.99913 * 172.61517 * 18 16 14 20 20 Si 1.86803 * 120.00297 * 352.61511 * 18 16 14 21 21 H 1.48494 * 109.46957 * 85.89757 * 20 18 16 22 22 H 1.48497 * 109.46951 * 205.89949 * 20 18 16 23 23 H 1.48501 * 109.46745 * 325.89675 * 20 18 16 24 24 H 1.08993 * 109.47559 * 296.05001 * 1 2 3 25 25 H 1.09006 * 109.47039 * 56.05232 * 1 2 3 26 26 H 1.09004 * 109.47138 * 176.04692 * 1 2 3 27 27 H 1.08995 * 109.47254 * 183.95567 * 3 2 1 28 28 H 1.09007 * 109.46763 * 303.94915 * 3 2 1 29 29 H 1.09000 * 109.47358 * 63.94634 * 3 2 1 30 30 H 1.09001 * 109.47244 * 50.00243 * 4 2 1 31 31 H 1.09001 * 109.47463 * 290.00565 * 4 2 1 32 32 H 1.08995 * 109.47360 * 60.00469 * 5 4 2 33 33 H 1.08997 * 109.47446 * 299.99805 * 5 4 2 34 34 H 1.09007 * 109.46862 * 144.90049 * 7 6 5 35 35 H 1.08994 * 109.47467 * 24.90404 * 7 6 5 36 36 H 1.07991 * 120.42046 * 359.95941 * 9 8 7 37 37 H 1.08008 * 120.78595 * 180.23197 * 10 9 8 38 38 H 1.07992 * 120.41933 * 179.77782 * 11 10 9 39 39 H 1.07995 * 119.61489 * 180.25275 * 12 11 10 40 40 H 0.96996 * 120.00002 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7658 1.1376 5 6 3.5044 -0.9551 0.9704 6 7 4.0294 -1.7195 2.1047 7 6 4.0861 -3.1819 2.0390 8 6 2.8540 -3.7619 2.6841 9 6 1.7697 -4.1067 1.8991 10 6 0.6432 -4.6445 2.5019 11 6 0.6454 -4.8069 3.8792 12 6 1.7665 -4.4395 4.5986 13 7 2.8227 -3.9352 3.9910 14 6 4.4599 -1.0772 3.2085 15 8 4.3293 0.1291 3.3005 16 6 5.0849 -1.8308 4.2968 17 1 5.0447 -2.9100 4.2988 18 6 5.7349 -1.1522 5.3352 19 7 6.1660 -1.8119 6.3775 20 14 5.9855 0.6959 5.2304 21 1 4.7792 1.3892 5.7493 22 1 7.1666 1.0821 6.0435 23 1 6.2101 1.0854 3.8151 24 1 -0.3634 0.4513 0.9232 25 1 -0.3633 0.5739 -0.8525 26 1 -0.3633 -1.0253 -0.0708 27 1 3.0827 1.3433 -0.0709 28 1 1.5897 1.9163 -0.8525 29 1 1.7042 1.8725 0.9232 30 1 1.5090 -1.7405 1.1757 31 1 1.7974 -0.2246 2.0628 32 1 3.9909 0.0195 0.9324 33 1 3.7024 -1.4964 0.0453 34 1 4.9726 -3.5351 2.5659 35 1 4.1333 -3.4972 0.9967 36 1 1.8012 -3.9622 0.8294 37 1 -0.2174 -4.9266 1.9134 38 1 -0.2165 -5.2194 4.3825 39 1 1.7778 -4.5667 5.6710 40 1 6.6165 -1.3420 7.0966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356596042.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:20 Heat of formation + Delta-G solvation = -16.557366 kcal Electronic energy + Delta-G solvation = -22316.150660 eV Core-core repulsion = 19130.107088 eV Total energy + Delta-G solvation = -3186.043572 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.19062 -40.00211 -38.34338 -36.26478 -34.90774 -33.29646 -32.56868 -30.86277 -28.54024 -28.41396 -27.31526 -25.01927 -24.25466 -23.10041 -22.22152 -20.87386 -18.77337 -17.97109 -17.61495 -17.25735 -16.71775 -16.56258 -16.47206 -16.05122 -15.97599 -15.19771 -14.98309 -14.59793 -14.51605 -14.20753 -14.05557 -13.82019 -13.58745 -13.40016 -13.10829 -13.01230 -12.87058 -12.60093 -12.59398 -12.42383 -12.35803 -11.80292 -11.47510 -11.17104 -10.67150 -10.21629 -9.90711 -9.79850 -9.49370 -9.27794 -8.69355 -6.84547 0.25927 0.54776 1.30367 1.34684 1.62493 2.11139 2.32782 2.54977 3.00875 3.28730 3.39894 3.59451 3.90051 4.00081 4.10325 4.18335 4.25083 4.29250 4.37192 4.42850 4.51402 4.57266 4.60994 4.69493 4.77334 4.81032 4.91305 4.94835 4.96379 4.98849 5.06253 5.21986 5.31532 5.34458 5.79072 5.89136 5.93991 6.03762 6.13630 6.45230 6.70056 7.17339 7.35919 8.06378 8.35489 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012148 B = 0.008656 C = 0.005616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.281314 B = 3233.948882 C = 4984.464125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.540 5.540 3 C 0.023 3.977 4 C 0.054 3.946 5 C 0.130 3.870 6 N -0.621 5.621 7 C 0.170 3.830 8 C 0.093 3.907 9 C -0.161 4.161 10 C -0.079 4.079 11 C -0.171 4.171 12 C 0.070 3.930 13 N -0.495 5.495 14 C 0.547 3.453 15 O -0.649 6.649 16 C -0.522 4.522 17 H 0.098 0.902 18 C 0.066 3.934 19 N -0.849 5.849 20 Si 1.005 2.995 21 H -0.302 1.302 22 H -0.304 1.304 23 H -0.281 1.281 24 H 0.010 0.990 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.005 0.995 30 H 0.086 0.914 31 H -0.010 1.010 32 H 0.051 0.949 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.123 0.877 36 H 0.159 0.841 37 H 0.170 0.830 38 H 0.162 0.838 39 H 0.150 0.850 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.768 -5.552 -13.155 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.264 5.264 3 C -0.126 4.126 4 C -0.075 4.075 5 C 0.007 3.993 6 N -0.353 5.353 7 C 0.046 3.954 8 C -0.046 4.046 9 C -0.181 4.181 10 C -0.104 4.104 11 C -0.191 4.191 12 C -0.088 4.088 13 N -0.204 5.204 14 C 0.356 3.644 15 O -0.544 6.544 16 C -0.559 4.559 17 H 0.116 0.884 18 C -0.148 4.148 19 N -0.481 5.481 20 Si 0.839 3.161 21 H -0.230 1.230 22 H -0.235 1.235 23 H -0.208 1.208 24 H 0.028 0.972 25 H 0.108 0.892 26 H 0.099 0.901 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.023 0.977 30 H 0.104 0.896 31 H 0.008 0.992 32 H 0.070 0.930 33 H 0.124 0.876 34 H 0.092 0.908 35 H 0.141 0.859 36 H 0.177 0.823 37 H 0.188 0.812 38 H 0.179 0.821 39 H 0.167 0.833 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.843 -5.033 -12.905 18.224 hybrid contribution -0.701 1.074 1.205 1.760 sum -12.544 -3.959 -11.699 17.604 Atomic orbital electron populations 1.22468 0.86079 1.03261 1.00556 1.62087 1.08999 1.13834 1.41515 1.22450 1.00993 0.88851 1.00272 1.22433 0.96765 0.98202 0.90131 1.21268 0.92280 0.96749 0.89026 1.47398 1.65809 1.05838 1.16230 1.20371 0.94577 0.79270 1.01181 1.21999 0.97313 0.95622 0.89681 1.22219 0.93597 1.00073 1.02208 1.21963 0.98459 0.95252 0.94767 1.22434 0.99655 1.01367 0.95660 1.23078 0.89665 0.94926 1.01082 1.67629 1.29527 1.11140 1.12113 1.18337 0.77775 0.85657 0.82616 1.90163 1.64971 1.17667 1.81647 1.21138 1.34007 0.96679 1.04053 0.88371 1.26235 0.91839 1.03509 0.93253 1.69596 1.31852 1.39822 1.06819 0.84710 0.74928 0.79560 0.76877 1.23040 1.23483 1.20758 0.97169 0.89243 0.90057 0.91901 0.88840 0.97663 0.89578 0.99170 0.93025 0.87595 0.90837 0.85937 0.82347 0.81247 0.82078 0.83274 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.57 127.69 1.22 1.74 16 2 N -0.54 -14.60 5.02 -948.86 -4.76 -19.36 16 3 C 0.02 0.62 9.32 127.69 1.19 1.81 16 4 C 0.05 1.80 5.28 86.30 0.46 2.25 16 5 C 0.13 4.62 5.33 86.38 0.46 5.08 16 6 N -0.62 -26.47 2.47 -831.26 -2.05 -28.52 16 7 C 0.17 6.03 5.47 85.63 0.47 6.50 16 8 C 0.09 3.22 6.30 42.55 0.27 3.49 16 9 C -0.16 -4.01 8.03 22.36 0.18 -3.83 16 10 C -0.08 -1.65 10.18 22.47 0.23 -1.42 16 11 C -0.17 -4.07 10.11 22.36 0.23 -3.85 16 12 C 0.07 2.30 11.18 84.67 0.95 3.25 16 13 N -0.49 -20.21 8.87 -183.89 -1.63 -21.84 16 14 C 0.55 29.99 7.30 86.36 0.63 30.62 16 15 O -0.65 -39.15 11.71 -4.32 -0.05 -39.20 16 16 C -0.52 -30.63 8.82 24.83 0.22 -30.41 16 17 H 0.10 5.85 5.41 -2.91 -0.02 5.83 16 18 C 0.07 3.96 5.52 85.30 0.47 4.43 16 19 N -0.85 -50.35 13.92 21.83 0.30 -50.05 16 20 Si 1.01 55.39 25.97 68.60 1.78 57.17 16 21 H -0.30 -17.39 7.11 99.48 0.71 -16.69 16 22 H -0.30 -15.42 7.11 99.48 0.71 -14.71 16 23 H -0.28 -16.28 6.41 99.48 0.64 -15.64 16 24 H 0.01 0.23 8.14 -2.39 -0.02 0.22 16 25 H 0.09 1.50 8.12 -2.38 -0.02 1.48 16 26 H 0.08 1.48 8.12 -2.38 -0.02 1.46 16 27 H 0.06 1.84 6.47 -2.39 -0.02 1.83 16 28 H 0.09 1.94 8.12 -2.38 -0.02 1.93 16 29 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.09 2.57 6.10 -2.39 -0.01 2.55 16 31 H -0.01 -0.44 8.12 -2.39 -0.02 -0.46 16 32 H 0.05 2.10 5.91 -2.39 -0.01 2.08 16 33 H 0.11 2.93 7.86 -2.39 -0.02 2.91 16 34 H 0.07 3.01 6.34 -2.38 -0.02 3.00 16 35 H 0.12 3.10 7.73 -2.39 -0.02 3.08 16 36 H 0.16 2.92 7.93 -2.91 -0.02 2.90 16 37 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 38 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 39 H 0.15 4.62 8.06 -2.91 -0.02 4.59 16 40 H 0.29 15.62 8.29 -92.71 -0.77 14.85 16 Total: -1.00 -77.63 325.97 1.52 -76.11 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: 0.96 Total: 6.02 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 6.97 Total: 19.66 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -8.14 Total: -119.77 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -0.05 Total: -39.20 kcal Atomic # 14 Polarization: 55.39 SS G_CDS: 1.78 Total: 57.17 kcal Total: -77.63 1.52 -76.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356596042.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.556 kcal (2) G-P(sol) polarization free energy of solvation -77.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds