Wall clock time and date at job start Mon Mar 30 2020 01:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 119.99681 * 2 1 4 4 N 1.46496 * 109.47329 * 124.99427 * 3 2 1 5 5 C 1.46500 * 120.00216 * 269.99777 * 4 3 2 6 6 C 1.50695 * 109.47452 * 269.99921 * 5 4 3 7 7 H 1.08002 * 120.00041 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00314 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00531 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 120.00032 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.46940 * 89.99839 * 10 8 6 12 12 H 1.48493 * 109.47314 * 209.99717 * 10 8 6 13 13 H 1.48501 * 109.46979 * 329.99956 * 10 8 6 14 14 C 1.34777 * 119.99871 * 89.99659 * 4 3 2 15 15 O 1.21285 * 120.00064 * 179.97438 * 14 4 3 16 16 C 1.50696 * 119.99879 * 0.02562 * 14 4 3 17 17 C 1.53002 * 109.47384 * 179.97438 * 16 14 4 18 18 C 1.50696 * 109.47697 * 179.97438 * 17 16 14 19 19 C 1.39866 * 125.89915 * 125.01620 * 18 17 16 20 20 C 1.35320 * 107.91898 * 179.97438 * 19 18 17 21 21 N 1.34951 * 107.74569 * 359.97438 * 20 19 18 22 22 C 1.46504 * 126.03463 * 180.02562 * 21 20 19 23 23 N 1.30844 * 125.89476 * 304.97706 * 18 17 16 24 24 H 1.08003 * 119.99788 * 179.97438 * 1 2 3 25 25 H 1.07999 * 120.00526 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.00182 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.46901 * 4.99563 * 3 2 1 28 28 H 1.09000 * 109.46965 * 244.99621 * 3 2 1 29 29 H 1.09005 * 109.46832 * 30.00201 * 5 4 3 30 30 H 1.09004 * 109.47006 * 149.99939 * 5 4 3 31 31 H 0.96997 * 120.00944 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.47637 * 59.99784 * 16 14 4 33 33 H 1.09001 * 109.47377 * 299.99476 * 16 14 4 34 34 H 1.09002 * 109.46684 * 59.99478 * 17 16 14 35 35 H 1.09000 * 109.47111 * 300.00479 * 17 16 14 36 36 H 1.07993 * 126.04141 * 359.97438 * 19 18 17 37 37 H 1.07996 * 126.12765 * 180.02562 * 20 19 18 38 38 H 1.09005 * 109.46927 * 270.02579 * 22 21 20 39 39 H 1.08994 * 109.47314 * 30.02415 * 22 21 20 40 40 H 1.08998 * 109.46715 * 150.02896 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3321 1.1315 5 6 2.5586 1.8652 2.4248 6 6 2.8439 3.3439 2.4803 7 1 3.3030 3.8373 1.6364 8 6 2.5180 4.0670 3.6080 9 7 2.7665 5.3576 3.6563 10 14 1.7234 3.2138 5.0675 11 1 2.7793 2.7238 5.9894 12 1 0.8465 4.1737 5.7848 13 1 0.9127 2.0655 4.5883 14 6 4.2495 0.8664 0.9825 15 8 5.0198 0.8891 1.9191 16 6 4.6971 0.3185 -0.3480 17 6 6.1536 -0.1392 -0.2473 18 6 6.6011 -0.6876 -1.5777 19 6 7.7163 -0.2623 -2.3069 20 6 7.7774 -0.9981 -3.4410 21 7 6.7381 -1.8588 -3.4294 22 6 6.4229 -2.8433 -4.4675 23 7 6.0139 -1.6445 -2.2497 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3584 2.1316 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 1.4885 1.6968 2.5458 30 1 3.0987 1.3607 3.2260 31 1 2.5376 5.8663 4.4498 32 1 4.6125 1.0953 -1.1080 33 1 4.0681 -0.5283 -0.6225 34 1 6.2386 -0.9159 0.5127 35 1 6.7825 0.7079 0.0270 36 1 8.4065 0.5157 -2.0163 37 1 8.5246 -0.9124 -4.2160 38 1 5.7634 -2.3915 -5.2086 39 1 7.3438 -3.1689 -4.9512 40 1 5.9268 -3.7020 -4.0152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359371187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:09 Heat of formation + Delta-G solvation = 63.312128 kcal Electronic energy + Delta-G solvation = -20983.769342 eV Core-core repulsion = 17801.189171 eV Total energy + Delta-G solvation = -3182.580171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.21879 -39.14674 -35.76343 -34.50574 -33.14787 -32.09484 -31.77391 -30.03301 -28.50403 -26.84116 -25.48474 -24.18656 -21.87053 -21.19253 -19.98951 -19.48453 -18.24201 -17.12471 -16.86220 -16.21344 -15.71765 -15.48767 -15.13026 -14.42708 -14.21463 -14.08604 -13.77472 -13.46575 -13.08391 -12.97508 -12.68414 -12.45476 -12.38313 -11.92923 -11.72783 -11.64315 -11.48132 -11.22452 -10.94076 -10.88576 -10.50336 -10.43151 -10.09597 -9.51144 -9.31117 -9.19776 -8.90647 -8.61698 -8.54266 -7.67691 -6.04287 -4.02562 1.80074 2.41279 2.42781 2.76282 3.33272 3.39263 3.41463 3.43561 3.97646 4.35033 4.44171 4.65927 4.83599 4.88347 5.10711 5.14469 5.18695 5.27324 5.31380 5.39678 5.46329 5.55868 5.67384 5.77684 5.89231 5.94885 6.00984 6.19718 6.26650 6.28903 6.66151 6.77252 6.78072 6.90713 6.90951 7.01745 7.42697 7.66658 7.68627 8.31475 8.52114 8.98024 9.05566 9.56534 11.09131 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023020 B = 0.003945 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.064996 B = 7095.384029 C = 7865.143806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.166 4.166 3 C 0.136 3.864 4 N -0.590 5.590 5 C 0.217 3.783 6 C -0.527 4.527 7 H 0.075 0.925 8 C 0.072 3.928 9 N -0.899 5.899 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.509 3.491 15 O -0.541 6.541 16 C -0.131 4.131 17 C -0.024 4.024 18 C 0.083 3.917 19 C -0.266 4.266 20 C 0.048 3.952 21 N -0.383 5.383 22 C 0.104 3.896 23 N -0.295 5.295 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.106 0.894 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.029 0.971 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.148 0.852 37 H 0.172 0.828 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.430 -15.150 -17.199 23.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.186 4.186 3 C 0.013 3.987 4 N -0.321 5.321 5 C 0.096 3.904 6 C -0.565 4.565 7 H 0.093 0.907 8 C -0.130 4.130 9 N -0.537 5.537 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.296 3.704 15 O -0.418 6.418 16 C -0.172 4.172 17 C -0.063 4.063 18 C -0.083 4.083 19 C -0.295 4.295 20 C -0.097 4.097 21 N -0.165 5.165 22 C -0.038 4.038 23 N -0.118 5.118 24 H 0.112 0.888 25 H 0.117 0.883 26 H 0.124 0.876 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.166 0.834 37 H 0.189 0.811 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.829 -15.900 -16.727 23.394 hybrid contribution 0.227 0.260 0.567 0.664 sum 4.057 -15.641 -16.160 22.852 Atomic orbital electron populations 1.23823 0.95857 1.01740 1.00965 1.23470 0.96386 0.99190 0.99533 1.20598 0.93115 0.95223 0.89806 1.47892 1.10871 1.60438 1.12869 1.19640 0.94842 0.95097 0.80821 1.21345 1.40944 0.91185 1.03060 0.90726 1.24845 0.95321 0.94711 0.98121 1.69893 1.47979 1.06601 1.29260 0.86864 0.79885 0.79674 0.83384 1.19901 1.21131 1.19033 1.20388 0.82005 0.78203 0.89823 1.90665 1.52438 1.56497 1.42243 1.21630 0.96939 1.02087 0.96563 1.19793 0.95461 1.01332 0.89727 1.22458 0.94316 0.94362 0.97170 1.21494 1.03441 1.07632 0.96972 1.22497 0.93525 0.93466 1.00254 1.48514 1.21245 1.29666 1.17095 1.21799 1.02420 0.91157 0.88422 1.77333 1.19268 1.20337 0.94836 0.88808 0.88271 0.87641 0.89342 0.90386 0.95325 0.94590 0.92615 0.89356 0.89090 0.89503 0.88959 0.83385 0.81131 0.90918 0.89741 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.40 14.32 29.01 0.42 -1.98 16 2 C -0.17 -2.38 9.74 -36.03 -0.35 -2.73 16 3 C 0.14 2.25 5.65 -5.20 -0.03 2.22 16 4 N -0.59 -12.43 2.44 -176.44 -0.43 -12.86 16 5 C 0.22 5.43 4.23 -5.20 -0.02 5.40 16 6 C -0.53 -15.35 9.94 -34.45 -0.34 -15.69 16 7 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 8 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 9 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 10 Si 0.87 21.97 27.47 -169.99 -4.67 17.30 16 11 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 14 C 0.51 10.53 7.67 -10.99 -0.08 10.45 16 15 O -0.54 -13.35 15.56 5.55 0.09 -13.26 16 16 C -0.13 -2.05 4.21 -27.88 -0.12 -2.17 16 17 C -0.02 -0.35 5.08 -27.88 -0.14 -0.49 16 18 C 0.08 1.16 6.49 -82.41 -0.53 0.62 16 19 C -0.27 -3.15 10.72 -40.01 -0.43 -3.57 16 20 C 0.05 0.47 11.49 -17.22 -0.20 0.27 16 21 N -0.38 -4.13 4.01 -68.16 -0.27 -4.41 16 22 C 0.10 0.63 11.47 59.85 0.69 1.32 16 23 N -0.29 -4.14 12.54 33.67 0.42 -3.72 16 24 H 0.09 1.04 8.06 -52.48 -0.42 0.62 16 25 H 0.10 1.25 7.84 -52.49 -0.41 0.84 16 26 H 0.11 1.44 7.83 -52.49 -0.41 1.03 16 27 H 0.09 1.52 7.72 -51.93 -0.40 1.12 16 28 H 0.08 1.12 6.44 -51.93 -0.33 0.78 16 29 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 30 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 31 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 32 H 0.09 1.29 7.40 -51.93 -0.38 0.91 16 33 H 0.09 1.31 7.78 -51.93 -0.40 0.91 16 34 H 0.09 1.35 8.10 -51.93 -0.42 0.93 16 35 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 36 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 343.36 15.07 5.17 5.17 Total: -1.00 -36.35 343.36 -6.20 -42.55 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -6.04 Total: 0.79 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.25 Total: -4.33 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.49 Total: -48.23 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.35 -6.20 -42.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359371187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.866 kcal (2) G-P(sol) polarization free energy of solvation -36.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds