Wall clock time and date at job start Mon Mar 30 2020 01:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 119.99681 * 2 1 4 4 N 1.46496 * 109.47329 * 124.99427 * 3 2 1 5 5 C 1.46500 * 120.00216 * 269.99777 * 4 3 2 6 6 C 1.50695 * 109.47452 * 269.99921 * 5 4 3 7 7 H 1.08002 * 120.00041 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00314 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00531 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 120.00032 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.46940 * 89.99839 * 10 8 6 12 12 H 1.48493 * 109.47314 * 209.99717 * 10 8 6 13 13 H 1.48501 * 109.46979 * 329.99956 * 10 8 6 14 14 C 1.34777 * 119.99871 * 89.99659 * 4 3 2 15 15 O 1.21285 * 120.00064 * 179.97438 * 14 4 3 16 16 C 1.50696 * 119.99879 * 0.02562 * 14 4 3 17 17 C 1.53002 * 109.47384 * 179.97438 * 16 14 4 18 18 C 1.50696 * 109.47697 * 179.97438 * 17 16 14 19 19 C 1.39866 * 125.89915 * 125.01620 * 18 17 16 20 20 C 1.35320 * 107.91898 * 179.97438 * 19 18 17 21 21 N 1.34951 * 107.74569 * 359.97438 * 20 19 18 22 22 C 1.46504 * 126.03463 * 180.02562 * 21 20 19 23 23 N 1.30844 * 125.89476 * 304.97706 * 18 17 16 24 24 H 1.08003 * 119.99788 * 179.97438 * 1 2 3 25 25 H 1.07999 * 120.00526 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.00182 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.46901 * 4.99563 * 3 2 1 28 28 H 1.09000 * 109.46965 * 244.99621 * 3 2 1 29 29 H 1.09005 * 109.46832 * 30.00201 * 5 4 3 30 30 H 1.09004 * 109.47006 * 149.99939 * 5 4 3 31 31 H 0.96997 * 120.00944 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.47637 * 59.99784 * 16 14 4 33 33 H 1.09001 * 109.47377 * 299.99476 * 16 14 4 34 34 H 1.09002 * 109.46684 * 59.99478 * 17 16 14 35 35 H 1.09000 * 109.47111 * 300.00479 * 17 16 14 36 36 H 1.07993 * 126.04141 * 359.97438 * 19 18 17 37 37 H 1.07996 * 126.12765 * 180.02562 * 20 19 18 38 38 H 1.09005 * 109.46927 * 270.02579 * 22 21 20 39 39 H 1.08994 * 109.47314 * 30.02415 * 22 21 20 40 40 H 1.08998 * 109.46715 * 150.02896 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3321 1.1315 5 6 2.5586 1.8652 2.4248 6 6 2.8439 3.3439 2.4803 7 1 3.3030 3.8373 1.6364 8 6 2.5180 4.0670 3.6080 9 7 2.7665 5.3576 3.6563 10 14 1.7234 3.2138 5.0675 11 1 2.7793 2.7238 5.9894 12 1 0.8465 4.1737 5.7848 13 1 0.9127 2.0655 4.5883 14 6 4.2495 0.8664 0.9825 15 8 5.0198 0.8891 1.9191 16 6 4.6971 0.3185 -0.3480 17 6 6.1536 -0.1392 -0.2473 18 6 6.6011 -0.6876 -1.5777 19 6 7.7163 -0.2623 -2.3069 20 6 7.7774 -0.9981 -3.4410 21 7 6.7381 -1.8588 -3.4294 22 6 6.4229 -2.8433 -4.4675 23 7 6.0139 -1.6445 -2.2497 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3584 2.1316 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 1.4885 1.6968 2.5458 30 1 3.0987 1.3607 3.2260 31 1 2.5376 5.8663 4.4498 32 1 4.6125 1.0953 -1.1080 33 1 4.0681 -0.5283 -0.6225 34 1 6.2386 -0.9159 0.5127 35 1 6.7825 0.7079 0.0270 36 1 8.4065 0.5157 -2.0163 37 1 8.5246 -0.9124 -4.2160 38 1 5.7634 -2.3915 -5.2086 39 1 7.3438 -3.1689 -4.9512 40 1 5.9268 -3.7020 -4.0152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359371187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:09 Heat of formation + Delta-G solvation = 39.085643 kcal Electronic energy + Delta-G solvation = -20984.819881 eV Core-core repulsion = 17801.189171 eV Total energy + Delta-G solvation = -3183.630710 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.07877 -40.78665 -37.31289 -35.59855 -34.99227 -33.74805 -32.85051 -30.94118 -30.29959 -27.85898 -26.88307 -25.51916 -23.66014 -22.00040 -21.18454 -20.47113 -19.79655 -19.07917 -18.11599 -17.49415 -17.29695 -16.70324 -16.24375 -16.04427 -15.67801 -15.19466 -14.78296 -14.71396 -14.43003 -14.28269 -14.09260 -13.61432 -13.53465 -13.33432 -13.10133 -12.92126 -12.89606 -12.78066 -12.49565 -12.30811 -12.12550 -11.94357 -11.72919 -11.45832 -10.82615 -10.68245 -10.33127 -10.13704 -9.45204 -9.43862 -8.33282 -6.38090 0.97826 1.30221 1.34397 1.36709 1.45421 1.72205 1.79192 1.83663 2.31445 2.43727 3.00888 3.52403 3.73850 3.92494 4.05534 4.15836 4.17783 4.21257 4.33147 4.43380 4.49176 4.61881 4.69433 4.74135 4.77994 4.85299 4.90694 4.94089 5.01396 5.07348 5.10326 5.19895 5.46363 5.54208 5.70762 5.71734 5.91596 6.23105 6.24977 6.62840 6.67878 6.79136 7.22012 7.41091 8.83643 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023020 B = 0.003945 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.064996 B = 7095.384029 C = 7865.143806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.183 4.183 3 C 0.133 3.867 4 N -0.597 5.597 5 C 0.227 3.773 6 C -0.535 4.535 7 H 0.030 0.970 8 C 0.013 3.987 9 N -0.944 5.944 10 Si 0.946 3.054 11 H -0.275 1.275 12 H -0.273 1.273 13 H -0.241 1.241 14 C 0.500 3.500 15 O -0.590 6.590 16 C -0.111 4.111 17 C -0.017 4.017 18 C 0.065 3.935 19 C -0.294 4.294 20 C 0.066 3.934 21 N -0.382 5.382 22 C 0.093 3.907 23 N -0.328 5.328 24 H 0.118 0.882 25 H 0.100 0.900 26 H 0.114 0.886 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.045 0.955 30 H 0.018 0.982 31 H 0.269 0.731 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.155 0.845 37 H 0.217 0.783 38 H 0.085 0.915 39 H 0.118 0.882 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.633 -17.402 -18.986 26.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.202 4.202 3 C 0.011 3.989 4 N -0.327 5.327 5 C 0.105 3.895 6 C -0.574 4.574 7 H 0.049 0.951 8 C -0.185 4.185 9 N -0.584 5.584 10 Si 0.768 3.232 11 H -0.201 1.201 12 H -0.198 1.198 13 H -0.164 1.164 14 C 0.290 3.710 15 O -0.471 6.471 16 C -0.152 4.152 17 C -0.057 4.057 18 C -0.100 4.100 19 C -0.323 4.323 20 C -0.081 4.081 21 N -0.165 5.165 22 C -0.046 4.046 23 N -0.153 5.153 24 H 0.136 0.864 25 H 0.119 0.881 26 H 0.132 0.868 27 H 0.096 0.904 28 H 0.117 0.883 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.127 0.873 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.173 0.827 37 H 0.233 0.767 38 H 0.104 0.896 39 H 0.137 0.863 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.997 -18.176 -18.570 26.157 hybrid contribution 0.509 0.975 0.965 1.463 sum 3.505 -17.201 -17.605 24.861 Atomic orbital electron populations 1.24068 0.95361 1.03010 0.98127 1.23295 0.96820 0.98040 1.02040 1.20812 0.92652 0.96502 0.88934 1.47992 1.11979 1.59890 1.12802 1.19280 0.95317 0.92209 0.82718 1.21556 1.40524 0.93402 1.01910 0.95128 1.25815 0.95929 0.95354 1.01443 1.70039 1.49443 1.08430 1.30533 0.85744 0.79110 0.79351 0.78953 1.20110 1.19836 1.16400 1.21280 0.81320 0.77331 0.91077 1.90629 1.53699 1.58505 1.44250 1.21520 0.97575 1.02642 0.93415 1.19607 0.94794 1.00571 0.90723 1.22254 0.95601 0.95268 0.96875 1.21743 1.03523 1.09002 0.98014 1.23138 0.93286 0.91549 1.00103 1.48910 1.20846 1.30062 1.16641 1.22193 1.04610 0.90274 0.87554 1.77220 1.20719 1.20779 0.96539 0.86374 0.88126 0.86829 0.90356 0.88326 0.93693 0.96378 0.92239 0.88060 0.87321 0.90818 0.90074 0.82684 0.76669 0.89616 0.86337 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.84 14.32 67.78 0.97 -2.87 16 2 C -0.18 -4.86 9.74 25.65 0.25 -4.61 16 3 C 0.13 4.31 5.65 85.63 0.48 4.79 16 4 N -0.60 -25.44 2.44 -830.51 -2.03 -27.47 16 5 C 0.23 11.50 4.23 85.63 0.36 11.86 16 6 C -0.54 -32.27 9.94 25.60 0.25 -32.02 16 7 H 0.03 2.05 8.06 -2.91 -0.02 2.02 16 8 C 0.01 0.76 5.47 84.65 0.46 1.22 16 9 N -0.94 -60.53 13.96 21.44 0.30 -60.24 16 10 Si 0.95 45.50 27.47 68.60 1.88 47.38 16 11 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 13 H -0.24 -10.52 6.54 99.48 0.65 -9.87 16 14 C 0.50 21.27 7.67 87.66 0.67 21.94 16 15 O -0.59 -30.42 15.56 -3.04 -0.05 -30.47 16 16 C -0.11 -3.49 4.21 29.85 0.13 -3.36 16 17 C -0.02 -0.53 5.08 29.85 0.15 -0.38 16 18 C 0.07 1.79 6.49 43.10 0.28 2.07 16 19 C -0.29 -6.63 10.72 21.99 0.24 -6.39 16 20 C 0.07 1.08 11.49 83.54 0.96 2.04 16 21 N -0.38 -7.28 4.01 -369.56 -1.48 -8.77 16 22 C 0.09 0.83 11.47 127.77 1.47 2.30 16 23 N -0.33 -8.87 12.54 -47.39 -0.59 -9.46 16 24 H 0.12 2.16 8.06 -2.91 -0.02 2.14 16 25 H 0.10 2.28 7.84 -2.91 -0.02 2.26 16 26 H 0.11 2.86 7.83 -2.91 -0.02 2.83 16 27 H 0.08 2.67 7.72 -2.39 -0.02 2.65 16 28 H 0.10 2.72 6.44 -2.39 -0.02 2.71 16 29 H 0.05 2.12 7.13 -2.38 -0.02 2.11 16 30 H 0.02 0.98 6.85 -2.38 -0.02 0.97 16 31 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 32 H 0.10 2.92 7.40 -2.39 -0.02 2.90 16 33 H 0.11 3.04 7.78 -2.39 -0.02 3.03 16 34 H 0.07 2.41 8.10 -2.39 -0.02 2.39 16 35 H 0.08 2.61 8.08 -2.39 -0.02 2.60 16 36 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 37 H 0.22 1.39 8.06 -2.91 -0.02 1.37 16 38 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -82.54 343.36 5.66 -76.88 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.95 Total: 15.54 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 6.67 Total: -3.40 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -3.80 Total: -105.93 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.05 Total: -30.47 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.88 Total: 47.38 kcal Total: -82.54 5.66 -76.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359371187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.964 kcal (2) G-P(sol) polarization free energy of solvation -82.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds