Wall clock time and date at job start Mon Mar 30 2020 01:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36880 * 126.40091 * 2 1 4 4 C 1.34669 * 106.81790 * 180.25747 * 3 2 1 5 5 N 1.34125 * 108.02195 * 359.74020 * 4 3 2 6 6 C 1.30500 * 109.25542 * 0.02562 * 5 4 3 7 7 C 1.50696 * 125.65070 * 180.02562 * 6 5 4 8 8 H 1.09002 * 110.88825 * 177.59175 * 7 6 5 9 9 C 1.55163 * 111.00176 * 301.47185 * 7 6 5 10 10 C 1.54327 * 102.94251 * 153.61656 * 9 7 6 11 11 N 1.47030 * 107.26874 * 337.80287 * 10 9 7 12 12 C 1.34777 * 125.64636 * 178.90204 * 11 10 9 13 13 O 1.21274 * 120.00135 * 180.30533 * 12 11 10 14 14 C 1.50706 * 119.99766 * 0.02997 * 12 11 10 15 15 C 1.52999 * 109.46573 * 179.97438 * 14 12 11 16 16 C 1.50706 * 109.46953 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99816 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00344 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00355 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99771 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46889 * 89.99924 * 20 18 16 22 22 H 1.48498 * 109.47131 * 210.00227 * 20 18 16 23 23 H 1.48500 * 109.47362 * 330.00383 * 20 18 16 24 24 C 1.47423 * 108.70203 * 359.17434 * 11 10 9 25 25 H 1.09005 * 109.46809 * 270.19022 * 1 2 3 26 26 H 1.08994 * 109.47227 * 30.18285 * 1 2 3 27 27 H 1.08994 * 109.47256 * 150.18605 * 1 2 3 28 28 H 1.08007 * 126.59061 * 359.97438 * 3 2 1 29 29 H 1.08003 * 125.98657 * 179.72393 * 4 3 2 30 30 H 1.08994 * 110.71940 * 35.25367 * 9 7 6 31 31 H 1.09003 * 110.87188 * 272.04680 * 9 7 6 32 32 H 1.09003 * 109.87890 * 218.39056 * 10 9 7 33 33 H 1.08996 * 109.88058 * 97.22132 * 10 9 7 34 34 H 1.09000 * 109.47161 * 299.99737 * 14 12 11 35 35 H 1.09001 * 109.46740 * 59.99879 * 14 12 11 36 36 H 1.09000 * 109.47486 * 299.99934 * 15 14 12 37 37 H 1.09001 * 109.47362 * 60.00657 * 15 14 12 38 38 H 0.96991 * 119.99886 * 179.97438 * 19 18 16 39 39 H 1.08999 * 110.36420 * 142.73876 * 24 11 10 40 40 H 1.08998 * 110.36405 * 265.05840 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1017 0.0000 4 6 3.5460 0.6504 -0.0058 5 7 3.5095 -0.6904 -0.0035 6 6 2.2663 -1.0870 0.0030 7 6 1.8017 -2.5206 0.0081 8 1 0.7142 -2.5765 0.0559 9 6 2.3441 -3.2853 -1.2283 10 6 2.3830 -4.7487 -0.7399 11 7 2.4315 -4.7174 0.7292 12 6 2.4541 -5.7956 1.5376 13 8 2.4887 -5.6506 2.7411 14 6 2.4303 -7.1815 0.9459 15 6 2.4640 -8.2171 2.0716 16 6 2.4395 -9.6030 1.4801 17 1 2.4039 -9.7321 0.4084 18 6 2.4626 -10.7060 2.3069 19 7 2.4417 -11.9155 1.7907 20 14 2.5249 -10.4827 4.1605 21 1 1.1420 -10.4179 4.6980 22 1 3.2411 -11.6300 4.7736 23 1 3.2409 -9.2224 4.4835 24 6 2.4446 -3.3112 1.1719 25 1 -0.3633 0.0034 1.0277 26 1 -0.3633 0.8883 -0.5166 27 1 -0.3633 -0.8916 -0.5109 28 1 1.9613 2.1346 -0.0004 29 1 4.4368 1.2610 -0.0116 30 1 3.3443 -2.9386 -1.4879 31 1 1.6685 -3.1799 -2.0772 32 1 3.2713 -5.2460 -1.1296 33 1 1.4867 -5.2737 -1.0702 34 1 1.5203 -7.3107 0.3599 35 1 3.2994 -7.3166 0.3021 36 1 3.3741 -8.0877 2.6573 37 1 1.5951 -8.0821 2.7157 38 1 2.4583 -12.6914 2.3724 39 1 1.8554 -3.1944 2.0815 40 1 3.4682 -2.9748 1.3361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360398609.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:18 Heat of formation + Delta-G solvation = 24.155035 kcal Electronic energy + Delta-G solvation = -21007.914764 eV Core-core repulsion = 17823.636615 eV Total energy + Delta-G solvation = -3184.278150 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.42303 -39.71270 -37.31945 -34.34861 -33.47242 -32.54514 -31.15690 -29.80940 -28.43189 -27.35073 -26.09841 -23.64162 -22.31060 -21.51763 -20.82310 -19.61094 -18.72539 -17.64385 -17.19310 -16.18107 -16.05424 -15.97357 -15.12781 -14.60145 -14.21503 -14.15304 -13.89781 -13.54142 -13.38679 -13.32966 -13.16884 -12.95381 -12.61495 -12.40293 -12.08305 -11.75428 -11.55270 -11.33603 -11.04512 -10.91348 -10.19520 -10.11963 -10.00286 -9.90476 -9.74993 -9.22693 -9.13900 -8.64775 -8.48828 -8.42708 -6.00366 -3.98853 1.70222 2.40569 2.86174 3.14197 3.21338 3.40396 3.46908 3.58829 4.03734 4.26612 4.36945 4.39869 4.53853 4.59689 4.64502 4.75489 4.94855 5.10414 5.11628 5.20468 5.32381 5.35273 5.41412 5.56120 5.66354 5.79644 5.88469 5.92394 6.02915 6.10796 6.16390 6.45492 6.48849 6.72552 6.82934 7.39979 7.47398 7.75195 7.83772 7.84798 8.52152 8.65621 9.02766 9.62916 11.12482 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040378 B = 0.003151 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.272382 B = 8883.886423 C = 9069.528589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.459 5.459 3 C -0.061 4.061 4 C -0.026 4.026 5 N -0.481 5.481 6 C 0.220 3.780 7 C -0.020 4.020 8 H 0.095 0.905 9 C -0.116 4.116 10 C 0.103 3.897 11 N -0.629 5.629 12 C 0.527 3.473 13 O -0.539 6.539 14 C -0.116 4.116 15 C 0.001 3.999 16 C -0.524 4.524 17 H 0.073 0.927 18 C 0.069 3.931 19 N -0.904 5.904 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.261 1.261 24 C 0.122 3.878 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.174 0.826 29 H 0.170 0.830 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.024 0.976 37 H 0.019 0.981 38 H 0.263 0.737 39 H 0.075 0.925 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.681 27.662 -8.328 29.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.142 5.142 3 C -0.194 4.194 4 C -0.174 4.174 5 N -0.200 5.200 6 C -0.043 4.043 7 C -0.041 4.041 8 H 0.114 0.886 9 C -0.155 4.155 10 C -0.020 4.020 11 N -0.366 5.366 12 C 0.318 3.682 13 O -0.415 6.415 14 C -0.156 4.156 15 C -0.037 4.037 16 C -0.561 4.561 17 H 0.091 0.909 18 C -0.132 4.132 19 N -0.543 5.543 20 Si 0.704 3.296 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.185 1.185 24 C -0.002 4.002 25 H 0.097 0.903 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.191 0.809 29 H 0.187 0.813 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.131 26.958 -7.565 28.303 hybrid contribution -0.776 0.807 0.856 1.409 sum -4.906 27.765 -6.709 28.983 Atomic orbital electron populations 1.22088 0.76656 1.04776 1.03908 1.45305 1.07611 1.06628 1.54633 1.22700 0.91411 0.92448 1.12818 1.22330 0.96451 0.91134 1.07527 1.70214 1.18260 1.11963 1.19519 1.22779 0.85840 0.89955 1.05699 1.20633 1.00130 0.85584 0.97792 0.88638 1.22699 1.03151 0.93469 0.96190 1.22015 1.02610 0.96774 0.80630 1.48648 1.75572 1.05501 1.06855 1.21296 0.74358 0.86159 0.86357 1.90658 1.49381 1.86533 1.14896 1.21653 1.03248 0.89171 1.01495 1.19390 0.97693 0.93211 0.93433 1.21110 1.51162 0.88619 0.95250 0.90917 1.24967 0.94353 0.95080 0.98838 1.69909 1.51162 0.97762 1.35486 0.86802 0.78742 0.78147 0.85919 1.20267 1.21449 1.18483 1.21997 1.01560 0.80831 0.95797 0.90284 0.89464 0.89276 0.80882 0.81251 0.89201 0.89930 0.90650 0.90943 0.89671 0.89582 0.95785 0.96289 0.92740 0.90633 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.30 10.83 59.84 0.65 0.94 16 2 N -0.46 -3.81 3.15 -121.28 -0.38 -4.19 16 3 C -0.06 -0.49 11.58 -16.56 -0.19 -0.68 16 4 C -0.03 -0.26 11.87 -17.81 -0.21 -0.47 16 5 N -0.48 -6.04 10.91 -10.82 -0.12 -6.15 16 6 C 0.22 2.34 6.59 -155.41 -1.02 1.32 16 7 C -0.02 -0.20 3.35 -89.74 -0.30 -0.50 16 8 H 0.10 0.76 6.88 -51.93 -0.36 0.41 16 9 C -0.12 -1.05 6.41 -24.89 -0.16 -1.21 16 10 C 0.10 1.14 6.49 -3.06 -0.02 1.12 16 11 N -0.63 -9.44 3.33 -170.65 -0.57 -10.00 16 12 C 0.53 10.27 7.85 -10.98 -0.09 10.18 16 13 O -0.54 -12.62 16.24 5.56 0.09 -12.53 16 14 C -0.12 -2.33 4.83 -27.88 -0.13 -2.47 16 15 C 0.00 0.02 3.33 -27.88 -0.09 -0.08 16 16 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 17 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 20 Si 0.88 22.89 27.47 -169.99 -4.67 18.23 16 21 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.26 -6.81 6.54 56.52 0.37 -6.44 16 24 C 0.12 1.64 6.36 -2.65 -0.02 1.63 16 25 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.09 0.31 7.12 -51.93 -0.37 -0.06 16 28 H 0.17 0.79 8.06 -52.48 -0.42 0.36 16 29 H 0.17 1.30 8.06 -52.48 -0.42 0.88 16 30 H 0.09 0.91 7.94 -51.93 -0.41 0.50 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.02 0.64 7.16 -51.93 -0.37 0.27 16 37 H 0.02 0.50 7.52 -51.93 -0.39 0.10 16 38 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 39 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 40 H 0.08 1.17 7.82 -51.93 -0.41 0.76 16 LS Contribution 332.32 15.07 5.01 5.01 Total: -1.00 -37.15 332.32 -8.00 -45.15 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -6.12 Total: -4.26 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -2.02 Total: -3.76 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -0.29 Total: -47.84 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.67 Total: 18.23 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -37.15 -8.00 -45.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360398609.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.310 kcal (2) G-P(sol) polarization free energy of solvation -37.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds