Wall clock time and date at job start Mon Mar 30 2020 02:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00032 * 2 1 4 4 H 1.48501 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47219 * 299.99580 * 3 2 1 6 6 H 1.48495 * 109.47199 * 59.99849 * 3 2 1 7 7 C 1.37881 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99700 * 160.20765 * 7 2 1 9 9 C 1.50700 * 120.00062 * 340.21251 * 7 2 1 10 10 C 1.53006 * 115.54903 * 324.10109 * 9 7 2 11 11 N 1.46904 * 109.46673 * 280.10634 * 10 9 7 12 12 C 1.46905 * 110.99608 * 177.71612 * 11 10 9 13 13 H 1.08998 * 112.87500 * 341.97323 * 12 11 10 14 14 C 1.53672 * 113.64135 * 113.26758 * 12 11 10 15 15 H 1.09004 * 116.23028 * 208.42631 * 14 12 11 16 16 C 1.54207 * 113.70883 * 346.38352 * 14 12 11 17 17 C 1.53130 * 104.37810 * 69.54705 * 16 14 12 18 18 O 1.42765 * 108.26696 * 15.01956 * 17 16 14 19 19 C 1.43019 * 110.93431 * 0.45305 * 18 17 16 20 20 H 1.08999 * 114.52087 * 113.99721 * 19 18 17 21 21 C 1.52867 * 113.64766 * 210.54853 * 12 11 10 22 22 C 1.52913 * 121.17089 * 144.99033 * 21 12 11 23 23 C 1.53961 * 86.78784 * 209.35991 * 22 21 12 24 24 C 1.52923 * 121.14431 * 36.40862 * 21 12 11 25 25 C 1.52998 * 117.51981 * 109.79993 * 9 7 2 26 26 C 1.52999 * 117.50020 * 178.43209 * 9 7 2 27 27 H 0.96998 * 119.99908 * 5.08400 * 1 2 3 28 28 H 1.08995 * 109.46964 * 160.11196 * 10 9 7 29 29 H 1.08997 * 109.46738 * 40.10588 * 10 9 7 30 30 H 1.00899 * 111.00060 * 53.76609 * 11 10 9 31 31 H 1.08999 * 110.50861 * 187.34636 * 16 14 12 32 32 H 1.08997 * 110.50570 * 310.05143 * 16 14 12 33 33 H 1.09002 * 109.21137 * 255.57087 * 17 16 14 34 34 H 1.09006 * 110.13965 * 135.00542 * 17 16 14 35 35 H 1.08998 * 113.66195 * 323.82868 * 22 21 12 36 36 H 1.09003 * 113.66451 * 94.88682 * 22 21 12 37 37 H 1.08998 * 113.57393 * 270.13897 * 23 22 21 38 38 H 1.08995 * 113.65059 * 139.35664 * 23 22 21 39 39 H 1.08999 * 113.66118 * 265.13620 * 24 21 12 40 40 H 1.08996 * 113.66197 * 36.18550 * 24 21 12 41 41 H 1.09003 * 117.50019 * 214.97059 * 25 9 7 42 42 H 1.09004 * 117.49999 * 359.97438 * 25 9 7 43 43 H 1.09006 * 117.49663 * 359.97322 * 26 9 7 44 44 H 1.08997 * 117.50334 * 144.97216 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0366 -1.2218 -0.3162 9 6 1.3178 -2.4605 0.4429 10 6 0.3145 -2.3020 1.5872 11 7 1.0359 -2.2370 2.8653 12 6 0.1068 -2.0302 3.9843 13 1 -0.8657 -1.6565 3.6639 14 6 0.0215 -3.2275 4.9438 15 1 -0.9242 -3.3567 5.4702 16 6 0.6540 -4.5175 4.3834 17 6 2.1573 -4.2268 4.3645 18 8 2.4005 -3.0749 5.1722 19 6 1.1831 -2.5802 5.7365 20 1 1.1218 -2.6610 6.8217 21 6 0.7137 -1.2473 5.1485 22 6 -0.1301 -0.2751 5.9738 23 6 1.1695 0.5156 6.2111 24 6 1.6982 -0.1029 4.9043 25 6 1.0076 -3.5078 -0.6284 26 6 2.1251 -3.7589 0.3860 27 1 -0.4850 0.8367 -0.0744 28 1 -0.3642 -3.1548 1.5961 29 1 -0.2565 -1.3845 1.4452 30 1 1.7433 -1.5178 2.8451 31 1 0.4520 -5.3602 5.0445 32 1 0.2812 -4.7205 3.3795 33 1 2.4719 -4.0307 3.3395 34 1 2.7093 -5.0785 4.7623 35 1 -0.8713 0.2676 5.3871 36 1 -0.5453 -0.7164 6.8799 37 1 1.7179 0.1970 7.0975 38 1 1.0391 1.5965 6.1604 39 1 2.7437 -0.4068 4.9558 40 1 1.4707 0.4880 4.0171 41 1 0.0889 -4.0839 -0.5180 42 1 1.2999 -3.2808 -1.6537 43 1 3.1529 -3.6971 0.0282 44 1 1.9419 -4.5000 1.1640 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366820283.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:15 Heat of formation + Delta-G solvation = 36.772885 kcal Electronic energy + Delta-G solvation = -23572.135060 eV Core-core repulsion = 20491.944405 eV Total energy + Delta-G solvation = -3080.190655 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.21542 -37.29357 -36.79177 -34.07514 -32.21698 -31.51381 -30.20357 -25.93260 -25.47884 -25.12289 -23.79088 -22.70786 -21.60012 -20.99775 -19.53459 -19.01182 -17.61545 -16.62728 -16.01168 -15.69905 -15.20932 -14.77309 -14.65307 -14.10959 -13.75988 -13.53427 -13.39526 -12.80445 -12.36349 -12.15361 -11.96855 -11.76990 -11.54176 -11.49710 -11.19128 -11.09942 -10.90304 -10.84912 -10.77805 -10.38903 -10.36294 -10.14363 -10.04531 -9.93241 -9.35179 -9.13549 -9.05963 -8.77697 -8.62090 -8.11668 -7.25118 -6.08007 -4.06968 3.21573 3.32487 3.38385 3.99721 4.34105 4.56013 4.60142 4.86833 4.94740 5.00207 5.06425 5.13539 5.33540 5.41846 5.59399 5.63457 5.68313 5.76408 5.84198 5.86976 6.01372 6.02396 6.03212 6.20410 6.21554 6.26794 6.33704 6.44152 6.46085 6.53630 6.62511 6.69197 6.75393 6.80057 6.85793 6.98829 7.05674 7.19130 7.44820 7.59747 7.64342 7.98745 8.17555 8.42761 8.49902 8.88830 9.48269 10.90410 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.008363 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.136762 B = 3347.377936 C = 4488.665988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.072 3.928 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.282 1.282 7 C -0.489 4.489 8 H 0.060 0.940 9 C 0.059 3.941 10 C 0.084 3.916 11 N -0.655 5.655 12 C 0.092 3.908 13 H 0.057 0.943 14 C -0.137 4.137 15 H 0.100 0.900 16 C -0.122 4.122 17 C 0.072 3.928 18 O -0.357 6.357 19 C 0.093 3.907 20 H 0.081 0.919 21 C -0.121 4.121 22 C -0.109 4.109 23 C -0.139 4.139 24 C -0.121 4.121 25 C -0.205 4.205 26 C -0.196 4.196 27 H 0.260 0.740 28 H 0.029 0.971 29 H 0.086 0.914 30 H 0.351 0.649 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.174 -3.448 11.803 12.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.131 4.131 3 Si 0.708 3.292 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.526 4.526 8 H 0.078 0.922 9 C 0.058 3.942 10 C -0.044 4.044 11 N -0.287 5.287 12 C -0.019 4.019 13 H 0.075 0.925 14 C -0.157 4.157 15 H 0.118 0.882 16 C -0.160 4.160 17 C -0.004 4.004 18 O -0.275 6.275 19 C 0.035 3.965 20 H 0.098 0.902 21 C -0.122 4.122 22 C -0.147 4.147 23 C -0.176 4.176 24 C -0.159 4.159 25 C -0.244 4.244 26 C -0.233 4.233 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.104 0.896 30 H 0.172 0.828 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.062 0.938 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.095 -3.907 11.943 12.614 hybrid contribution -0.142 1.573 -0.364 1.621 sum -1.236 -2.334 11.579 11.877 Atomic orbital electron populations 1.69901 1.06057 1.26586 1.48317 1.24939 0.94584 0.98944 0.94595 0.86711 0.80853 0.83928 0.77710 1.19476 1.21198 1.20739 1.20607 0.97557 0.90428 1.43986 0.92158 1.18871 0.94965 0.87822 0.92558 1.21773 0.95144 1.01310 0.86173 1.60401 1.13750 1.52674 1.01875 1.22233 0.95823 0.92972 0.90913 0.92546 1.24110 0.98401 0.95078 0.98081 0.88167 1.22254 0.95811 0.96168 1.01777 1.22784 0.94698 0.86222 0.96686 1.87969 1.28159 1.45446 1.65957 1.23162 0.84784 0.93302 0.95300 0.90155 1.23114 0.97912 0.93299 0.97839 1.22538 0.96423 0.96635 0.99073 1.22809 0.97189 0.99161 0.98470 1.22540 0.99668 0.96358 0.97325 1.22951 0.97713 1.07719 0.95999 1.22720 0.95252 1.03430 1.01924 0.92949 0.95204 0.89593 0.82846 0.92924 0.89963 0.89197 0.93762 0.89788 0.91689 0.90527 0.91871 0.90672 0.90025 0.92120 0.90813 0.91280 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.42 11.01 55.43 0.61 -22.81 16 2 C 0.07 1.89 5.08 -17.82 -0.09 1.80 16 3 Si 0.88 20.43 29.59 -169.99 -5.03 15.41 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.49 -12.92 8.92 -34.44 -0.31 -13.23 16 8 H 0.06 1.63 7.89 -52.49 -0.41 1.22 16 9 C 0.06 1.41 1.86 -155.66 -0.29 1.12 16 10 C 0.08 1.89 5.17 -3.82 -0.02 1.87 16 11 N -0.66 -12.79 3.24 -106.42 -0.34 -13.13 16 12 C 0.09 1.57 4.03 -67.43 -0.27 1.30 16 13 H 0.06 1.03 7.80 -51.93 -0.41 0.63 16 14 C -0.14 -2.00 5.05 -88.70 -0.45 -2.45 16 15 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 16 C -0.12 -1.79 6.13 -26.03 -0.16 -1.95 16 17 C 0.07 1.14 6.73 37.22 0.25 1.40 16 18 O -0.36 -6.09 10.53 -35.23 -0.37 -6.46 16 19 C 0.09 1.38 5.37 -25.75 -0.14 1.24 16 20 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 21 C -0.12 -1.82 0.86 -154.65 -0.13 -1.95 16 22 C -0.11 -1.40 7.84 -26.28 -0.21 -1.61 16 23 C -0.14 -1.80 8.08 -25.74 -0.21 -2.00 16 24 C -0.12 -1.93 6.52 -26.28 -0.17 -2.10 16 25 C -0.21 -4.70 9.88 -26.73 -0.26 -4.96 16 26 C -0.20 -4.24 9.92 -26.73 -0.27 -4.51 16 27 H 0.26 6.72 8.32 -40.82 -0.34 6.38 16 28 H 0.03 0.66 7.95 -51.93 -0.41 0.24 16 29 H 0.09 2.17 5.31 -51.93 -0.28 1.90 16 30 H 0.35 7.57 7.29 -39.29 -0.29 7.28 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 33 H 0.09 1.62 6.77 -51.93 -0.35 1.26 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 40 H 0.08 1.45 8.13 -51.93 -0.42 1.03 16 41 H 0.06 1.31 8.09 -51.93 -0.42 0.90 16 42 H 0.07 1.73 8.14 -51.93 -0.42 1.30 16 43 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 44 H 0.07 1.42 7.72 -51.93 -0.40 1.02 16 LS Contribution 339.96 15.07 5.12 5.12 Total: -1.00 -26.08 339.96 -10.32 -36.40 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -7.59 Total: 11.51 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: -2.72 Total: -26.04 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.27 Total: -35.94 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.37 Total: -6.46 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -26.08 -10.32 -36.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366820283.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.178 kcal (2) G-P(sol) polarization free energy of solvation -26.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds