Wall clock time and date at job start Mon Mar 30 2020 02:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00121 * 2 1 4 4 H 1.48495 * 109.47202 * 95.05755 * 3 2 1 5 5 H 1.48505 * 109.47131 * 215.05923 * 3 2 1 6 6 H 1.48501 * 109.47207 * 335.05386 * 3 2 1 7 7 C 1.37875 * 119.99581 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99968 * 354.89381 * 7 2 1 9 9 C 1.50697 * 119.99594 * 174.88872 * 7 2 1 10 10 C 1.52994 * 115.55293 * 275.23113 * 9 7 2 11 11 N 1.46905 * 109.47677 * 294.86784 * 10 9 7 12 12 C 1.46894 * 111.00272 * 184.63358 * 11 10 9 13 13 H 1.09005 * 113.54550 * 25.00948 * 12 11 10 14 14 C 1.50663 * 114.58449 * 250.65001 * 12 11 10 15 15 H 1.09001 * 114.36308 * 319.77236 * 14 12 11 16 16 C 1.52007 * 127.06108 * 114.28189 * 14 12 11 17 17 C 1.55745 * 102.20254 * 118.70034 * 16 14 12 18 18 O 1.46057 * 105.47118 * 353.77605 * 17 16 14 19 19 C 1.39733 * 103.73822 * 330.07299 * 18 17 16 20 20 H 1.08994 * 109.89570 * 296.06540 * 19 18 17 21 21 C 1.47711 * 136.44656 * 138.96323 * 19 18 17 22 22 C 1.52688 * 125.34784 * 346.34062 * 21 19 18 23 23 C 1.54004 * 86.69878 * 108.70191 * 22 21 19 24 24 C 1.52713 * 125.30887 * 103.57887 * 21 19 18 25 25 C 1.53008 * 117.49523 * 129.56534 * 9 7 2 26 26 C 1.52997 * 117.50066 * 60.91040 * 9 7 2 27 27 H 0.97005 * 120.00146 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47395 * 54.86827 * 10 9 7 29 29 H 1.09000 * 109.47600 * 174.86544 * 10 9 7 30 30 H 1.00898 * 110.99805 * 308.59357 * 11 10 9 31 31 H 1.08995 * 110.85959 * 0.51971 * 16 14 12 32 32 H 1.09005 * 110.85360 * 236.87755 * 16 14 12 33 33 H 1.08998 * 110.24967 * 234.77658 * 17 16 14 34 34 H 1.09006 * 110.32646 * 112.81807 * 17 16 14 35 35 H 1.08996 * 113.67965 * 223.15472 * 22 21 19 36 36 H 1.08998 * 113.67382 * 354.25811 * 22 21 19 37 37 H 1.08997 * 113.56458 * 269.93230 * 23 22 21 38 38 H 1.08999 * 113.56695 * 139.17582 * 23 22 21 39 39 H 1.08995 * 113.67338 * 5.72365 * 24 21 19 40 40 H 1.09002 * 113.67548 * 136.82058 * 24 21 19 41 41 H 1.08994 * 117.50249 * 0.02562 * 25 9 7 42 42 H 1.09003 * 117.49519 * 145.02205 * 25 9 7 43 43 H 1.08997 * 117.49876 * 214.97979 * 26 9 7 44 44 H 1.09006 * 117.49905 * 359.96886 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6036 1.9847 1.3946 5 1 3.4892 1.4733 -0.8043 6 1 1.3973 2.6811 -0.5905 7 6 2.0044 -1.1941 0.0005 8 1 1.4676 -2.1275 0.0842 9 6 3.5069 -1.1967 -0.1157 10 6 4.0586 -1.1340 -1.5414 11 7 3.6853 -2.3566 -2.2653 12 6 4.2907 -2.3817 -3.6034 13 1 5.1992 -1.7845 -3.6817 14 6 3.3155 -2.1924 -4.7362 15 1 2.3666 -2.7124 -4.6043 16 6 3.2511 -1.0217 -5.7036 17 6 3.5027 -1.7142 -7.0757 18 8 3.8253 -3.1028 -6.7579 19 6 4.4299 -3.0237 -5.5006 20 1 5.3580 -2.4566 -5.5704 21 6 4.3894 -3.7970 -4.2428 22 6 3.3489 -4.8576 -3.8910 23 6 4.4717 -5.8944 -4.0803 24 6 5.4703 -4.7650 -3.7666 25 6 4.2934 -2.0146 0.9108 26 6 4.3017 -0.4855 0.9812 27 1 -0.4850 0.8401 -0.0004 28 1 3.6425 -0.2668 -2.0542 29 1 5.1448 -1.0493 -1.5073 30 1 3.9373 -3.1797 -1.7389 31 1 4.0340 -0.2951 -5.4862 32 1 2.2674 -0.5526 -5.6802 33 1 4.3393 -1.2407 -7.5895 34 1 2.6060 -1.6672 -7.6937 35 1 2.9839 -4.7898 -2.8661 36 1 2.5462 -4.9432 -4.6234 37 1 4.5480 -6.2729 -5.0996 38 1 4.4626 -6.6881 -3.3333 39 1 6.3573 -4.7765 -4.3999 40 1 5.7060 -4.6709 -2.7065 41 1 3.7241 -2.5509 1.6699 42 1 5.2041 -2.5075 0.5704 43 1 5.2177 0.0269 0.6873 44 1 3.7377 -0.0152 1.7868 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368457152.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:19 Heat of formation + Delta-G solvation = 91.584022 kcal Electronic energy + Delta-G solvation = -22782.085484 eV Core-core repulsion = 19704.271618 eV Total energy + Delta-G solvation = -3077.813866 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.05732 -38.03723 -37.23151 -34.70443 -32.29642 -31.93669 -30.48764 -26.25415 -25.93476 -24.91826 -24.12068 -22.40369 -22.04856 -21.55088 -19.87940 -18.91443 -18.39006 -16.54610 -16.32060 -15.75561 -15.59653 -15.25908 -14.87869 -14.35162 -14.10656 -13.91596 -13.54094 -12.94314 -12.83374 -12.56067 -12.34004 -12.22209 -11.81512 -11.58746 -11.38007 -11.33514 -11.08724 -10.95791 -10.75714 -10.61107 -10.41822 -10.24047 -10.07204 -10.04629 -9.77367 -9.52223 -9.05359 -8.81425 -8.52906 -8.37909 -7.69289 -6.00038 -3.99090 3.10893 3.33361 3.42308 3.45466 4.22249 4.39094 4.49919 4.57605 4.67729 4.75449 4.87267 4.93233 5.03639 5.12848 5.22470 5.28333 5.43010 5.44891 5.53848 5.57648 5.64341 5.78046 5.81628 5.87866 5.90082 5.92475 5.98390 6.04025 6.15964 6.16817 6.18433 6.24612 6.37316 6.42820 6.46201 6.54543 6.59893 6.73545 6.97582 7.07396 7.20528 7.75714 7.83726 8.04401 8.61928 9.04958 9.63721 11.12598 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018502 B = 0.005934 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.010621 B = 4717.590034 C = 5459.937150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.075 3.925 3 Si 0.880 3.120 4 H -0.281 1.281 5 H -0.264 1.264 6 H -0.298 1.298 7 C -0.463 4.463 8 H 0.078 0.922 9 C 0.007 3.993 10 C 0.101 3.899 11 N -0.644 5.644 12 C 0.084 3.916 13 H 0.074 0.926 14 C -0.142 4.142 15 H 0.117 0.883 16 C -0.144 4.144 17 C 0.050 3.950 18 O -0.356 6.356 19 C 0.037 3.963 20 H 0.076 0.924 21 C -0.062 4.062 22 C -0.106 4.106 23 C -0.140 4.140 24 C -0.132 4.132 25 C -0.184 4.184 26 C -0.205 4.205 27 H 0.262 0.738 28 H 0.067 0.933 29 H 0.001 0.999 30 H 0.337 0.663 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.900 -5.832 -10.343 16.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.126 4.126 3 Si 0.709 3.291 4 H -0.207 1.207 5 H -0.188 1.188 6 H -0.225 1.225 7 C -0.501 4.501 8 H 0.096 0.904 9 C 0.006 3.994 10 C -0.028 4.028 11 N -0.275 5.275 12 C -0.027 4.027 13 H 0.091 0.909 14 C -0.162 4.162 15 H 0.135 0.865 16 C -0.182 4.182 17 C -0.026 4.026 18 O -0.275 6.275 19 C -0.022 4.022 20 H 0.094 0.906 21 C -0.063 4.063 22 C -0.143 4.143 23 C -0.177 4.177 24 C -0.170 4.170 25 C -0.222 4.222 26 C -0.243 4.243 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.019 0.981 30 H 0.156 0.844 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.086 -5.629 -10.702 15.746 hybrid contribution 1.410 1.206 0.272 1.876 sum 11.496 -4.423 -10.430 16.140 Atomic orbital electron populations 1.69903 1.06256 1.26741 1.50996 1.24917 0.94498 0.98723 0.94439 0.86887 0.80102 0.83764 0.78374 1.20701 1.18844 1.22464 1.20128 0.86397 0.94379 1.49191 0.90420 1.19472 0.94840 0.98806 0.86256 1.21752 0.93683 0.92436 0.94912 1.60356 1.60740 1.04786 1.01575 1.22837 0.94893 0.94931 0.90057 0.90888 1.24285 0.98810 0.96872 0.96185 0.86543 1.22377 1.03111 0.98119 0.94588 1.24153 1.00261 0.80960 0.97239 1.88355 1.78718 1.26043 1.34340 1.22790 0.96917 0.99431 0.83025 0.90633 1.22154 0.98985 0.93295 0.91845 1.22588 0.95834 0.92721 1.03147 1.22863 0.96685 0.96595 1.01554 1.22812 0.96724 0.96071 1.01375 1.22805 1.01305 0.92927 1.05138 1.23008 1.01773 0.94762 1.04756 0.92836 0.91431 0.98071 0.84363 0.91082 0.90246 0.92126 0.89362 0.88112 0.90971 0.90468 0.91395 0.91528 0.89496 0.89544 0.91468 0.91281 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.88 21.79 24.72 -169.99 -4.20 17.59 16 4 H -0.28 -6.84 7.08 56.52 0.40 -6.44 16 5 H -0.26 -6.19 6.06 56.52 0.34 -5.85 16 6 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 7 C -0.46 -12.67 9.33 -34.44 -0.32 -12.99 16 8 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 9 C 0.01 0.17 0.92 -155.66 -0.14 0.02 16 10 C 0.10 2.04 5.12 -3.82 -0.02 2.02 16 11 N -0.64 -11.57 6.09 -118.36 -0.72 -12.30 16 12 C 0.08 1.26 3.78 -78.32 -0.30 0.96 16 13 H 0.07 1.07 7.37 -51.93 -0.38 0.69 16 14 C -0.14 -2.16 4.28 -102.76 -0.44 -2.60 16 15 H 0.12 1.99 7.05 -51.93 -0.37 1.62 16 16 C -0.14 -1.92 6.84 -25.77 -0.18 -2.10 16 17 C 0.05 0.59 7.74 38.62 0.30 0.89 16 18 O -0.36 -5.17 11.46 -32.20 -0.37 -5.54 16 19 C 0.04 0.51 4.89 -36.98 -0.18 0.33 16 20 H 0.08 0.99 7.39 -51.93 -0.38 0.60 16 21 C -0.06 -0.82 0.98 -169.60 -0.17 -0.98 16 22 C -0.11 -1.39 6.60 -26.37 -0.17 -1.56 16 23 C -0.14 -1.55 8.08 -25.71 -0.21 -1.76 16 24 C -0.13 -1.50 7.90 -26.36 -0.21 -1.71 16 25 C -0.18 -3.61 9.96 -26.69 -0.27 -3.88 16 26 C -0.21 -4.30 7.56 -26.70 -0.20 -4.50 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.07 1.50 6.92 -51.93 -0.36 1.15 16 29 H 0.00 0.02 8.00 -51.93 -0.42 -0.39 16 30 H 0.34 5.72 7.87 -39.29 -0.31 5.41 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.10 1.41 7.27 -51.93 -0.38 1.03 16 36 H 0.07 0.99 7.97 -51.93 -0.41 0.57 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.09 1.95 7.09 -51.93 -0.37 1.58 16 LS Contribution 338.78 15.07 5.11 5.11 Total: -1.00 -29.69 338.78 -9.66 -39.34 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -7.64 Total: 8.27 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -2.60 Total: -25.79 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.05 Total: -38.98 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.37 Total: -5.54 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.20 Total: 17.59 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.69 -9.66 -39.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368457152.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.927 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds