Wall clock time and date at job start Mon Mar 30 2020 02:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00121 * 2 1 4 4 H 1.48495 * 109.47202 * 95.05755 * 3 2 1 5 5 H 1.48505 * 109.47131 * 215.05923 * 3 2 1 6 6 H 1.48501 * 109.47207 * 335.05386 * 3 2 1 7 7 C 1.37875 * 119.99581 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99968 * 354.89381 * 7 2 1 9 9 C 1.50697 * 119.99594 * 174.88872 * 7 2 1 10 10 C 1.52994 * 115.55293 * 275.23113 * 9 7 2 11 11 N 1.46905 * 109.47677 * 294.86784 * 10 9 7 12 12 C 1.46894 * 111.00272 * 184.63358 * 11 10 9 13 13 H 1.09005 * 113.54550 * 25.00948 * 12 11 10 14 14 C 1.50663 * 114.58449 * 250.65001 * 12 11 10 15 15 H 1.09001 * 114.36308 * 319.77236 * 14 12 11 16 16 C 1.52007 * 127.06108 * 114.28189 * 14 12 11 17 17 C 1.55745 * 102.20254 * 118.70034 * 16 14 12 18 18 O 1.46057 * 105.47118 * 353.77605 * 17 16 14 19 19 C 1.39733 * 103.73822 * 330.07299 * 18 17 16 20 20 H 1.08994 * 109.89570 * 296.06540 * 19 18 17 21 21 C 1.47711 * 136.44656 * 138.96323 * 19 18 17 22 22 C 1.52688 * 125.34784 * 346.34062 * 21 19 18 23 23 C 1.54004 * 86.69878 * 108.70191 * 22 21 19 24 24 C 1.52713 * 125.30887 * 103.57887 * 21 19 18 25 25 C 1.53008 * 117.49523 * 129.56534 * 9 7 2 26 26 C 1.52997 * 117.50066 * 60.91040 * 9 7 2 27 27 H 0.97005 * 120.00146 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47395 * 54.86827 * 10 9 7 29 29 H 1.09000 * 109.47600 * 174.86544 * 10 9 7 30 30 H 1.00898 * 110.99805 * 308.59357 * 11 10 9 31 31 H 1.08995 * 110.85959 * 0.51971 * 16 14 12 32 32 H 1.09005 * 110.85360 * 236.87755 * 16 14 12 33 33 H 1.08998 * 110.24967 * 234.77658 * 17 16 14 34 34 H 1.09006 * 110.32646 * 112.81807 * 17 16 14 35 35 H 1.08996 * 113.67965 * 223.15472 * 22 21 19 36 36 H 1.08998 * 113.67382 * 354.25811 * 22 21 19 37 37 H 1.08997 * 113.56458 * 269.93230 * 23 22 21 38 38 H 1.08999 * 113.56695 * 139.17582 * 23 22 21 39 39 H 1.08995 * 113.67338 * 5.72365 * 24 21 19 40 40 H 1.09002 * 113.67548 * 136.82058 * 24 21 19 41 41 H 1.08994 * 117.50249 * 0.02562 * 25 9 7 42 42 H 1.09003 * 117.49519 * 145.02205 * 25 9 7 43 43 H 1.08997 * 117.49876 * 214.97979 * 26 9 7 44 44 H 1.09006 * 117.49905 * 359.96886 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6036 1.9847 1.3946 5 1 3.4892 1.4733 -0.8043 6 1 1.3973 2.6811 -0.5905 7 6 2.0044 -1.1941 0.0005 8 1 1.4676 -2.1275 0.0842 9 6 3.5069 -1.1967 -0.1157 10 6 4.0586 -1.1340 -1.5414 11 7 3.6853 -2.3566 -2.2653 12 6 4.2907 -2.3817 -3.6034 13 1 5.1992 -1.7845 -3.6817 14 6 3.3155 -2.1924 -4.7362 15 1 2.3666 -2.7124 -4.6043 16 6 3.2511 -1.0217 -5.7036 17 6 3.5027 -1.7142 -7.0757 18 8 3.8253 -3.1028 -6.7579 19 6 4.4299 -3.0237 -5.5006 20 1 5.3580 -2.4566 -5.5704 21 6 4.3894 -3.7970 -4.2428 22 6 3.3489 -4.8576 -3.8910 23 6 4.4717 -5.8944 -4.0803 24 6 5.4703 -4.7650 -3.7666 25 6 4.2934 -2.0146 0.9108 26 6 4.3017 -0.4855 0.9812 27 1 -0.4850 0.8401 -0.0004 28 1 3.6425 -0.2668 -2.0542 29 1 5.1448 -1.0493 -1.5073 30 1 3.9373 -3.1797 -1.7389 31 1 4.0340 -0.2951 -5.4862 32 1 2.2674 -0.5526 -5.6802 33 1 4.3393 -1.2407 -7.5895 34 1 2.6060 -1.6672 -7.6937 35 1 2.9839 -4.7898 -2.8661 36 1 2.5462 -4.9432 -4.6234 37 1 4.5480 -6.2729 -5.0996 38 1 4.4626 -6.6881 -3.3333 39 1 6.3573 -4.7765 -4.3999 40 1 5.7060 -4.6709 -2.7065 41 1 3.7241 -2.5509 1.6699 42 1 5.2041 -2.5075 0.5704 43 1 5.2177 0.0269 0.6873 44 1 3.7377 -0.0152 1.7868 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368457152.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:18 Heat of formation + Delta-G solvation = 72.565418 kcal Electronic energy + Delta-G solvation = -22782.910193 eV Core-core repulsion = 19704.271618 eV Total energy + Delta-G solvation = -3078.638574 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.13623 -39.19210 -38.76336 -35.90725 -34.16873 -33.53322 -31.52444 -28.09314 -26.92314 -26.52461 -25.23427 -23.67225 -23.12951 -23.02491 -21.08300 -20.68453 -19.42886 -18.33037 -17.56505 -17.01211 -16.78095 -16.54698 -16.35255 -15.59459 -15.34916 -15.21917 -14.95547 -14.71694 -14.45560 -14.06984 -13.54073 -13.27135 -13.14561 -12.98404 -12.90292 -12.40683 -12.39206 -12.35514 -12.11605 -12.05944 -11.93352 -11.73193 -11.38836 -11.21430 -11.15440 -10.92547 -10.77338 -10.51610 -10.26313 -9.86359 -9.05013 -8.20154 -6.22356 1.36906 1.38689 1.50064 2.05255 2.42171 3.06464 3.15160 3.20215 3.37027 3.51708 3.65016 3.77736 3.92001 3.93746 4.07788 4.16832 4.25409 4.36106 4.39014 4.43631 4.47204 4.50867 4.57233 4.60728 4.67823 4.85268 4.86517 4.87391 4.90924 4.91618 4.95223 5.10886 5.11728 5.12757 5.18504 5.26831 5.41666 5.46279 5.56057 5.57855 5.78840 5.93301 6.34985 6.46700 6.70293 6.84089 7.43905 8.96502 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018502 B = 0.005934 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.010621 B = 4717.590034 C = 5459.937150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.015 3.985 3 Si 0.940 3.060 4 H -0.271 1.271 5 H -0.237 1.237 6 H -0.305 1.305 7 C -0.456 4.456 8 H 0.028 0.972 9 C -0.021 4.021 10 C 0.113 3.887 11 N -0.663 5.663 12 C 0.082 3.918 13 H 0.088 0.912 14 C -0.164 4.164 15 H 0.085 0.915 16 C -0.145 4.145 17 C 0.053 3.947 18 O -0.376 6.376 19 C 0.051 3.949 20 H 0.092 0.908 21 C -0.059 4.059 22 C -0.115 4.115 23 C -0.129 4.129 24 C -0.122 4.122 25 C -0.162 4.162 26 C -0.202 4.202 27 H 0.260 0.740 28 H 0.042 0.958 29 H 0.031 0.969 30 H 0.342 0.658 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.758 -5.658 -11.149 19.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.181 4.181 3 Si 0.766 3.234 4 H -0.197 1.197 5 H -0.160 1.160 6 H -0.233 1.233 7 C -0.494 4.494 8 H 0.047 0.953 9 C -0.022 4.022 10 C -0.017 4.017 11 N -0.294 5.294 12 C -0.028 4.028 13 H 0.106 0.894 14 C -0.184 4.184 15 H 0.104 0.896 16 C -0.182 4.182 17 C -0.023 4.023 18 O -0.295 6.295 19 C -0.008 4.008 20 H 0.110 0.890 21 C -0.060 4.060 22 C -0.152 4.152 23 C -0.167 4.167 24 C -0.159 4.159 25 C -0.199 4.199 26 C -0.239 4.239 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.162 0.838 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.974 -5.475 -11.509 18.913 hybrid contribution 0.102 1.039 0.527 1.170 sum 14.076 -4.436 -10.982 18.396 Atomic orbital electron populations 1.70073 1.08322 1.27476 1.53842 1.25758 0.95116 1.02641 0.94593 0.85898 0.79579 0.78860 0.79055 1.19708 1.16012 1.23328 1.20305 0.89511 0.92242 1.47340 0.95340 1.19370 0.92026 1.02304 0.88517 1.21477 0.94944 0.92386 0.92857 1.60234 1.62096 1.04324 1.02775 1.22920 0.95013 0.96625 0.88227 0.89402 1.24251 0.98275 0.98345 0.97481 0.89640 1.22404 1.02925 0.97814 0.95085 1.24285 1.01835 0.79683 0.96481 1.88330 1.79000 1.27678 1.34512 1.22833 0.96573 0.98875 0.82546 0.89026 1.22145 0.99901 0.92553 0.91371 1.22579 0.96268 0.94542 1.01823 1.22819 0.95140 0.96502 1.02210 1.22799 0.96563 0.94559 1.02012 1.22834 1.01650 0.92473 1.02929 1.23045 1.02100 0.95834 1.02951 0.93110 0.93947 0.95063 0.83826 0.90015 0.91383 0.89591 0.88367 0.89573 0.92549 0.90070 0.90130 0.89993 0.88779 0.90616 0.87680 0.88228 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.02 13.96 21.45 0.30 -60.72 16 2 C 0.01 0.86 5.47 84.65 0.46 1.32 16 3 Si 0.94 45.11 24.72 68.60 1.70 46.80 16 4 H -0.27 -12.52 7.08 99.48 0.70 -11.81 16 5 H -0.24 -10.26 6.06 99.48 0.60 -9.66 16 6 H -0.31 -14.95 7.11 99.48 0.71 -14.25 16 7 C -0.46 -25.68 9.33 25.60 0.24 -25.44 16 8 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 9 C -0.02 -0.92 0.92 -52.93 -0.05 -0.96 16 10 C 0.11 4.30 5.12 86.30 0.44 4.74 16 11 N -0.66 -23.26 6.09 -528.37 -3.22 -26.48 16 12 C 0.08 2.35 3.78 38.05 0.14 2.49 16 13 H 0.09 2.28 7.37 -2.38 -0.02 2.26 16 14 C -0.16 -4.93 4.28 -18.66 -0.08 -5.01 16 15 H 0.09 3.08 7.05 -2.39 -0.02 3.06 16 16 C -0.14 -3.72 6.84 31.22 0.21 -3.51 16 17 C 0.05 1.14 7.74 72.93 0.56 1.71 16 18 O -0.38 -10.33 11.46 -138.15 -1.58 -11.91 16 19 C 0.05 1.29 4.89 23.96 0.12 1.41 16 20 H 0.09 2.07 7.39 -2.39 -0.02 2.05 16 21 C -0.06 -1.46 0.98 -61.96 -0.06 -1.52 16 22 C -0.11 -3.00 6.60 30.83 0.20 -2.80 16 23 C -0.13 -2.61 8.08 31.26 0.25 -2.36 16 24 C -0.12 -2.39 7.90 30.83 0.24 -2.14 16 25 C -0.16 -5.88 9.96 30.62 0.30 -5.58 16 26 C -0.20 -7.81 7.56 30.62 0.23 -7.58 16 27 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 28 H 0.04 1.82 6.92 -2.38 -0.02 1.80 16 29 H 0.03 1.02 8.00 -2.39 -0.02 1.00 16 30 H 0.34 11.20 7.87 -89.70 -0.71 10.50 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.09 2.48 7.27 -2.39 -0.02 2.47 16 36 H 0.06 1.61 7.97 -2.39 -0.02 1.59 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 42 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 43 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 44 H 0.07 2.99 7.09 -2.38 -0.02 2.98 16 Total: -1.00 -67.04 338.78 0.58 -66.46 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: 0.16 Total: 31.08 kcal Atomic # 6 Polarization: -48.47 SS G_CDS: 3.23 Total: -45.24 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -2.92 Total: -87.20 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -1.58 Total: -11.91 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.70 Total: 46.80 kcal Total: -67.04 0.58 -66.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368457152.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.028 kcal (2) G-P(sol) polarization free energy of solvation -67.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds