Wall clock time and date at job start Mon Mar 30 2020 02:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99882 * 2 1 4 4 H 1.48508 * 109.47048 * 269.99413 * 3 2 1 5 5 H 1.48501 * 109.47434 * 29.99478 * 3 2 1 6 6 H 1.48505 * 109.47010 * 150.00096 * 3 2 1 7 7 C 1.37874 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99723 * 191.73252 * 7 2 1 9 9 C 1.50691 * 120.00337 * 11.73567 * 7 2 1 10 10 C 1.53009 * 115.56164 * 39.80178 * 9 7 2 11 11 N 1.46896 * 109.47100 * 90.53707 * 10 9 7 12 12 C 1.46899 * 110.99746 * 184.85192 * 11 10 9 13 13 H 1.09004 * 113.55575 * 25.23176 * 12 11 10 14 14 C 1.50650 * 114.58747 * 250.85328 * 12 11 10 15 15 H 1.09006 * 114.35274 * 174.20197 * 14 12 11 16 16 C 1.51984 * 127.13389 * 19.67874 * 14 12 11 17 17 C 1.55752 * 102.19224 * 241.25740 * 16 14 12 18 18 O 1.46053 * 105.47399 * 6.23675 * 17 16 14 19 19 C 1.39771 * 103.74101 * 29.92417 * 18 17 16 20 20 H 1.08992 * 109.59222 * 65.10282 * 19 18 17 21 21 C 1.47746 * 136.29732 * 221.18340 * 19 18 17 22 22 C 1.52677 * 125.31807 * 256.44934 * 21 19 18 23 23 C 1.54002 * 86.69249 * 108.67160 * 22 21 19 24 24 C 1.52694 * 125.29646 * 13.65632 * 21 19 18 25 25 C 1.53005 * 117.50177 * 185.48493 * 9 7 2 26 26 C 1.53003 * 60.02716 * 107.50299 * 25 9 7 27 27 H 0.97001 * 119.99513 * 355.00396 * 1 2 3 28 28 H 1.08999 * 109.47051 * 210.54529 * 10 9 7 29 29 H 1.09000 * 109.46738 * 330.53658 * 10 9 7 30 30 H 1.00892 * 111.00299 * 308.80638 * 11 10 9 31 31 H 1.08993 * 110.85774 * 359.43196 * 16 14 12 32 32 H 1.09000 * 110.85575 * 122.88107 * 16 14 12 33 33 H 1.08995 * 110.24454 * 125.23743 * 17 16 14 34 34 H 1.09002 * 110.24599 * 247.14399 * 17 16 14 35 35 H 1.09004 * 113.68173 * 223.11897 * 22 21 19 36 36 H 1.09005 * 113.67910 * 354.22403 * 22 21 19 37 37 H 1.08994 * 113.56914 * 269.93355 * 23 22 21 38 38 H 1.08994 * 113.56554 * 139.17183 * 23 22 21 39 39 H 1.09003 * 113.67864 * 5.76160 * 24 21 19 40 40 H 1.09006 * 113.67755 * 136.86349 * 24 21 19 41 41 H 1.08996 * 117.49438 * 0.02562 * 25 9 7 42 42 H 1.08994 * 117.50246 * 215.00563 * 25 9 7 43 43 H 1.09003 * 117.49481 * 107.48398 * 26 25 9 44 44 H 1.09006 * 117.49935 * 252.47267 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0464 -1.4002 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0677 -1.2038 0.1907 9 6 1.2747 -2.4856 -0.2643 10 6 0.2018 -2.4262 -1.3536 11 7 0.8030 -2.7599 -2.6517 12 6 -0.1716 -2.6014 -3.7394 13 1 -0.9667 -1.8914 -3.5119 14 6 -0.6413 -3.8944 -4.3535 15 1 -1.4363 -3.7793 -5.0904 16 6 -0.5628 -5.2830 -3.7406 17 6 0.3422 -6.0405 -4.7571 18 8 0.7942 -5.0272 -5.7068 19 6 0.8288 -3.8535 -4.9487 20 1 1.5872 -3.9430 -4.1710 21 6 0.4572 -2.4383 -5.1534 22 6 1.4372 -1.2974 -5.4161 23 6 0.8952 -1.2826 -6.8576 24 6 -0.3978 -1.9079 -6.3020 25 6 2.0673 -3.7867 -0.1238 26 6 1.0210 -3.4117 0.9277 27 1 -0.4849 0.8369 0.0732 28 1 -0.5885 -3.1411 -1.1245 29 1 -0.2184 -1.4213 -1.3953 30 1 1.6280 -2.2045 -2.8216 31 1 -0.0954 -5.2470 -2.7567 32 1 -1.5516 -5.7380 -3.6824 33 1 1.1955 -6.4844 -4.2445 34 1 -0.2315 -6.8118 -5.2710 35 1 1.2134 -0.3900 -4.8551 36 1 2.4837 -1.5941 -5.3450 37 1 1.4408 -1.9394 -7.5350 38 1 0.7561 -0.2795 -7.2605 39 1 -0.8130 -2.6910 -6.9365 40 1 -1.1410 -1.1734 -5.9916 41 1 3.1166 -3.7085 0.1607 42 1 1.8248 -4.6002 -0.8075 43 1 0.0899 -3.9784 0.9354 44 1 1.3820 -3.0873 1.9037 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368457154.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:22 Heat of formation + Delta-G solvation = 80.743320 kcal Electronic energy + Delta-G solvation = -23079.361270 eV Core-core repulsion = 20001.077316 eV Total energy + Delta-G solvation = -3078.283954 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.14341 -38.91562 -38.63856 -36.01005 -34.20484 -32.98763 -31.37942 -27.75188 -27.05833 -26.08938 -25.22478 -24.39643 -22.95795 -22.74834 -20.88691 -20.48034 -19.34570 -18.19625 -17.46389 -16.82959 -16.75398 -16.55403 -16.28585 -15.73230 -15.53497 -15.23107 -14.82060 -14.31582 -13.80195 -13.55144 -13.40442 -13.34632 -13.12913 -12.87432 -12.85451 -12.57944 -12.34471 -12.29251 -12.24848 -12.01899 -11.92156 -11.71440 -11.38909 -11.07791 -11.01635 -10.88508 -10.68748 -10.55425 -10.05329 -9.76287 -9.07099 -8.04511 -6.18520 1.39495 1.43469 1.51402 2.20198 2.40688 2.95810 3.07445 3.32185 3.51659 3.67668 3.75935 3.89827 3.90534 4.02691 4.19025 4.32885 4.39575 4.49211 4.53568 4.58051 4.67377 4.72088 4.73720 4.81232 4.83281 4.85639 4.99199 4.99658 5.03596 5.06418 5.08681 5.12407 5.19941 5.27135 5.32862 5.37336 5.48224 5.52986 5.60332 5.63507 6.03491 6.07560 6.37322 6.48868 6.58299 6.87471 7.42854 8.90706 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016984 B = 0.006645 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.176894 B = 4212.658340 C = 5308.899609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.031 3.969 3 Si 0.946 3.054 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.050 0.950 9 C 0.029 3.971 10 C 0.104 3.896 11 N -0.650 5.650 12 C 0.083 3.917 13 H 0.047 0.953 14 C -0.171 4.171 15 H 0.108 0.892 16 C -0.131 4.131 17 C 0.055 3.945 18 O -0.382 6.382 19 C 0.060 3.940 20 H 0.094 0.906 21 C -0.067 4.067 22 C -0.138 4.138 23 C -0.125 4.125 24 C -0.108 4.108 25 C -0.170 4.170 26 C -0.206 4.206 27 H 0.261 0.739 28 H 0.027 0.973 29 H 0.063 0.937 30 H 0.340 0.660 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.480 -5.768 -12.134 13.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.170 4.170 3 Si 0.773 3.227 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.028 3.972 10 C -0.024 4.024 11 N -0.280 5.280 12 C -0.028 4.028 13 H 0.064 0.936 14 C -0.190 4.190 15 H 0.126 0.874 16 C -0.168 4.168 17 C -0.021 4.021 18 O -0.302 6.302 19 C 0.002 3.998 20 H 0.111 0.889 21 C -0.068 4.068 22 C -0.175 4.175 23 C -0.162 4.162 24 C -0.146 4.146 25 C -0.208 4.208 26 C -0.245 4.245 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.081 0.919 30 H 0.158 0.842 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.124 0.876 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.089 0.911 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.691 -6.352 -12.323 13.966 hybrid contribution 0.225 1.748 0.834 1.950 sum -1.466 -4.604 -11.489 12.464 Atomic orbital electron populations 1.69963 1.06933 1.27250 1.49577 1.25567 0.95446 1.01625 0.94327 0.85742 0.78776 0.79853 0.78360 1.19835 1.21187 1.19825 1.20860 0.94125 0.90963 1.48442 0.93201 1.19040 0.96072 0.88695 0.93392 1.21432 0.94430 0.99645 0.86929 1.60543 1.07231 1.59567 1.00685 1.22156 0.94671 0.95793 0.90216 0.93558 1.24134 0.99236 0.94388 1.01239 0.87389 1.22189 1.00446 0.94964 0.99240 1.24192 0.97225 0.90915 0.89765 1.88273 1.88317 1.18393 1.35189 1.23137 0.96966 0.87552 0.92157 0.88879 1.22434 0.98233 0.91285 0.94864 1.22786 0.99062 0.97718 0.97970 1.22776 0.96297 1.01653 0.95506 1.22656 0.96852 1.00111 0.94975 1.22655 0.95263 1.00657 1.02208 1.22946 0.99271 1.07301 0.94961 0.92910 0.95415 0.91915 0.84166 0.91324 0.90267 0.91590 0.87614 0.90279 0.91302 0.89823 0.89994 0.90399 0.88963 0.91157 0.89439 0.91118 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.71 10.90 21.45 0.23 -48.47 16 2 C 0.03 1.60 5.15 84.65 0.44 2.04 16 3 Si 0.95 41.70 29.56 68.60 2.03 43.73 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 7 C -0.51 -26.73 9.01 25.60 0.23 -26.50 16 8 H 0.05 2.66 7.84 -2.91 -0.02 2.64 16 9 C 0.03 1.38 1.87 -52.90 -0.10 1.28 16 10 C 0.10 4.71 5.36 86.31 0.46 5.18 16 11 N -0.65 -24.63 4.29 -528.45 -2.27 -26.90 16 12 C 0.08 2.75 4.25 38.03 0.16 2.91 16 13 H 0.05 1.70 7.86 -2.38 -0.02 1.68 16 14 C -0.17 -5.03 4.42 -18.81 -0.08 -5.11 16 15 H 0.11 2.97 7.03 -2.38 -0.02 2.95 16 16 C -0.13 -3.55 6.75 31.21 0.21 -3.34 16 17 C 0.05 1.35 7.75 72.93 0.57 1.91 16 18 O -0.38 -11.53 11.46 -138.52 -1.59 -13.12 16 19 C 0.06 1.82 4.79 23.96 0.11 1.94 16 20 H 0.09 3.19 6.36 -2.39 -0.02 3.17 16 21 C -0.07 -1.91 1.01 -62.10 -0.06 -1.97 16 22 C -0.14 -3.73 7.46 30.83 0.23 -3.50 16 23 C -0.13 -2.76 8.08 31.26 0.25 -2.51 16 24 C -0.11 -2.55 6.86 30.83 0.21 -2.33 16 25 C -0.17 -7.23 9.73 30.60 0.30 -6.93 16 26 C -0.21 -9.40 9.88 30.62 0.30 -9.09 16 27 H 0.26 13.59 8.32 -92.71 -0.77 12.82 16 28 H 0.03 1.26 7.88 -2.39 -0.02 1.25 16 29 H 0.06 3.23 5.18 -2.39 -0.01 3.22 16 30 H 0.34 13.58 8.14 -89.70 -0.73 12.85 16 31 H 0.07 2.14 7.82 -2.39 -0.02 2.13 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.08 1.75 7.96 -2.39 -0.02 1.73 16 40 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 42 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 43 H 0.07 3.05 8.03 -2.39 -0.02 3.03 16 44 H 0.06 3.00 8.14 -2.38 -0.02 2.98 16 Total: -1.00 -54.97 341.85 1.89 -53.08 By element: Atomic # 1 Polarization: 37.47 SS G_CDS: 0.24 Total: 37.71 kcal Atomic # 6 Polarization: -49.27 SS G_CDS: 3.23 Total: -46.04 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -2.03 Total: -75.37 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -1.59 Total: -13.12 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -54.97 1.89 -53.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368457154.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.828 kcal (2) G-P(sol) polarization free energy of solvation -54.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds