Wall clock time and date at job start Mon Mar 30 2020 01:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35701 * 116.99922 * 2 1 4 4 C 1.39268 * 120.13798 * 180.28100 * 3 2 1 5 5 C 1.38634 * 117.91809 * 180.26558 * 4 3 2 6 6 C 1.38763 * 118.01845 * 359.46144 * 5 4 3 7 7 C 1.50698 * 120.01297 * 180.29714 * 6 5 4 8 8 N 1.46910 * 109.47101 * 95.00291 * 7 6 5 9 9 C 1.46845 * 110.99641 * 45.79042 * 8 7 6 10 10 C 1.53041 * 109.52483 * 185.83926 * 9 8 7 11 11 C 1.53118 * 109.27727 * 300.82530 * 10 9 8 12 12 C 1.50698 * 109.57684 * 177.58899 * 11 10 9 13 13 H 1.07999 * 119.99691 * 240.28812 * 12 11 10 14 14 C 1.37875 * 120.00294 * 60.27997 * 12 11 10 15 15 N 1.31523 * 119.99654 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00288 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47151 * 60.00180 * 16 14 12 18 18 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47367 * 300.00125 * 16 14 12 20 20 C 1.53125 * 109.16231 * 57.64896 * 11 10 9 21 21 C 1.46847 * 110.99846 * 169.99967 * 8 7 6 22 22 N 1.31817 * 119.97620 * 0.27979 * 6 5 4 23 23 N 1.28347 * 122.25792 * 359.97438 * 22 6 5 24 24 H 1.09002 * 109.46616 * 59.99973 * 1 2 3 25 25 H 1.08998 * 109.46898 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.46972 * 300.00209 * 1 2 3 27 27 H 1.08000 * 121.03994 * 0.02562 * 4 3 2 28 28 H 1.08002 * 120.99348 * 179.74347 * 5 4 3 29 29 H 1.09002 * 109.47578 * 215.00003 * 7 6 5 30 30 H 1.09001 * 109.47364 * 335.00900 * 7 6 5 31 31 H 1.09004 * 109.46492 * 305.85946 * 9 8 7 32 32 H 1.09003 * 109.46224 * 65.82580 * 9 8 7 33 33 H 1.08989 * 109.50511 * 180.87723 * 10 9 8 34 34 H 1.09004 * 109.52868 * 60.78118 * 10 9 8 35 35 H 1.09003 * 109.52243 * 297.74633 * 11 10 9 36 36 H 0.97003 * 119.99898 * 180.02562 * 15 14 12 37 37 H 1.08997 * 109.49911 * 182.40668 * 20 11 10 38 38 H 1.08997 * 109.53199 * 62.30796 * 20 11 10 39 39 H 1.08999 * 109.46160 * 294.17560 * 21 8 7 40 40 H 1.08996 * 109.46253 * 54.16232 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4357 1.2854 -0.0059 5 6 4.0167 2.5440 0.0000 6 6 3.1778 3.6493 0.0000 7 6 3.7614 5.0387 -0.0005 8 7 3.8394 5.5367 -1.3804 9 6 2.5901 5.2739 -2.1060 10 6 2.7578 5.6722 -3.5741 11 6 3.1152 7.1587 -3.6570 12 6 3.3400 7.5445 -5.0963 13 1 4.2983 7.9330 -5.4078 14 6 2.3223 7.4014 -6.0154 15 7 1.1551 6.9287 -5.6359 16 14 2.6011 7.8790 -7.7996 17 1 3.7095 7.0663 -8.3622 18 1 1.3608 7.6316 -8.5780 19 1 2.9546 9.3192 -7.8772 20 6 4.3932 7.4140 -2.8532 21 6 4.1780 6.9653 -1.4059 22 7 1.8701 3.4836 0.0000 23 7 1.3270 2.3207 -0.0005 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 4.0424 0.3919 -0.0110 28 1 5.0904 2.6609 0.0000 29 1 3.1262 5.6999 0.5890 30 1 4.7610 5.0131 0.4335 31 1 2.3496 4.2126 -2.0427 32 1 1.7827 5.8562 -1.6617 33 1 1.8255 5.4916 -4.1089 34 1 3.5555 5.0805 -4.0233 35 1 2.3001 7.7529 -3.2436 36 1 0.4392 6.8276 -6.2826 37 1 4.6291 8.4780 -2.8730 38 1 5.2173 6.8503 -3.2902 39 1 3.3632 7.5396 -0.9650 40 1 5.0910 7.1325 -0.8345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397182199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:32 Heat of formation + Delta-G solvation = 24.693182 kcal Electronic energy + Delta-G solvation = -21605.109075 eV Core-core repulsion = 18420.854261 eV Total energy + Delta-G solvation = -3184.254814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.33006 -38.85491 -37.90953 -34.40465 -33.24341 -32.26842 -30.64021 -29.73856 -27.78026 -27.04011 -24.93876 -24.03903 -22.86493 -21.97248 -21.03285 -18.73460 -18.52779 -17.70694 -16.52462 -16.28880 -15.80116 -15.43514 -14.78953 -14.46246 -14.30397 -14.15531 -13.93763 -13.45551 -13.05990 -12.82583 -12.37462 -12.20570 -12.15755 -11.82186 -11.71969 -11.26326 -11.17863 -10.89987 -10.70951 -10.46476 -10.27425 -10.15716 -9.93674 -9.61380 -9.38985 -9.11640 -8.90235 -8.63998 -8.24380 -7.76865 -5.91930 -3.97787 0.73647 0.94630 2.78042 3.35751 3.40406 3.42860 3.45732 4.00386 4.30207 4.48768 4.52536 4.58726 4.80402 4.97063 5.07680 5.14285 5.35087 5.37947 5.44210 5.48646 5.66534 5.72786 5.87138 5.95409 6.08840 6.15454 6.32855 6.37763 6.65509 6.69200 6.87932 6.89984 7.10093 7.17110 7.46193 7.61863 7.67501 7.85911 8.09568 8.21286 8.52968 8.66929 9.05864 9.66365 11.14102 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021138 B = 0.004329 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.300991 B = 6466.335828 C = 7367.169640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.304 6.304 3 C 0.253 3.747 4 C -0.138 4.138 5 C -0.067 4.067 6 C 0.052 3.948 7 C 0.108 3.892 8 N -0.530 5.530 9 C 0.060 3.940 10 C -0.103 4.103 11 C 0.048 3.952 12 C -0.512 4.512 13 H 0.054 0.946 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.889 3.111 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.105 4.105 21 C 0.061 3.939 22 N -0.194 5.194 23 N -0.298 5.298 24 H 0.064 0.936 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.155 0.845 28 H 0.158 0.842 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.030 0.970 33 H 0.091 0.909 34 H 0.040 0.960 35 H 0.021 0.979 36 H 0.260 0.740 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.028 0.972 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.892 -11.304 13.832 18.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.209 6.209 3 C 0.068 3.932 4 C -0.167 4.167 5 C -0.096 4.096 6 C -0.095 4.095 7 C -0.022 4.022 8 N -0.256 5.256 9 C -0.067 4.067 10 C -0.141 4.141 11 C 0.029 3.971 12 C -0.550 4.550 13 H 0.072 0.928 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.143 4.143 21 C -0.067 4.067 22 N -0.038 5.038 23 N -0.154 5.154 24 H 0.083 0.917 25 H 0.117 0.883 26 H 0.080 0.920 27 H 0.172 0.828 28 H 0.176 0.824 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.110 0.890 34 H 0.059 0.941 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.046 0.954 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.638 -11.250 13.520 17.785 hybrid contribution 0.559 -0.043 -0.646 0.855 sum 3.197 -11.293 12.874 17.422 Atomic orbital electron populations 1.22984 0.76667 1.03307 1.03046 1.86208 1.23327 1.23561 1.87793 1.21495 0.91002 0.87196 0.93492 1.21513 0.92303 0.99862 1.03049 1.22173 1.02404 0.90905 0.94081 1.22654 0.91238 0.97698 0.97898 1.20932 0.99668 0.88926 0.92631 1.62278 1.35396 1.17516 1.10398 1.22312 0.88337 0.99029 0.97040 1.21665 1.02918 0.98713 0.90842 1.18684 0.91600 0.92528 0.94266 1.21167 0.98094 1.42229 0.93506 0.92811 1.24974 0.95198 0.95246 0.98585 1.69882 1.02956 1.45853 1.34316 0.86705 0.77358 0.78970 0.85218 1.20350 1.21396 1.20364 1.21674 1.01165 0.98946 0.92549 1.22146 0.98741 0.86349 0.99419 1.72820 1.11115 1.13286 1.06625 1.73065 1.31879 0.94227 1.16243 0.91722 0.88286 0.92003 0.82778 0.82395 0.92974 0.89248 0.93085 0.95195 0.89044 0.94142 0.96059 0.93056 0.93017 0.92473 0.95375 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.40 101.05 1.05 1.39 16 2 O -0.30 -3.71 10.49 -18.81 -0.20 -3.91 16 3 C 0.25 3.47 7.57 -16.95 -0.13 3.34 16 4 C -0.14 -1.56 10.16 -39.05 -0.40 -1.95 16 5 C -0.07 -0.77 9.85 -39.24 -0.39 -1.15 16 6 C 0.05 0.76 4.99 -82.41 -0.41 0.34 16 7 C 0.11 1.52 5.61 -4.97 -0.03 1.49 16 8 N -0.53 -9.39 4.80 -236.10 -1.13 -10.53 16 9 C 0.06 1.26 4.73 -3.83 -0.02 1.24 16 10 C -0.10 -2.54 5.12 -26.65 -0.14 -2.67 16 11 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 12 C -0.51 -14.26 8.56 -34.44 -0.29 -14.55 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.71 5.31 -17.82 -0.09 1.62 16 15 N -0.89 -26.03 11.38 55.43 0.63 -25.40 16 16 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 C -0.11 -2.20 5.32 -26.65 -0.14 -2.34 16 21 C 0.06 1.07 5.42 -3.83 -0.02 1.05 16 22 N -0.19 -3.28 9.82 33.61 0.33 -2.95 16 23 N -0.30 -4.80 10.41 30.50 0.32 -4.49 16 24 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 25 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 27 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 30 H 0.09 0.98 8.05 -51.93 -0.42 0.56 16 31 H 0.05 1.08 5.76 -51.93 -0.30 0.78 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 2.53 6.18 -51.94 -0.32 2.21 16 34 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 LS Contribution 324.53 15.07 4.89 4.89 Total: -1.00 -31.45 324.53 -7.45 -38.91 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -6.07 Total: -1.93 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -1.20 Total: -11.18 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.14 Total: -43.36 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.20 Total: -3.91 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.45 -7.45 -38.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397182199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.599 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds