Wall clock time and date at job start Mon Mar 30 2020 01:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35701 * 116.99922 * 2 1 4 4 C 1.39268 * 120.13798 * 180.28100 * 3 2 1 5 5 C 1.38634 * 117.91809 * 180.26558 * 4 3 2 6 6 C 1.38763 * 118.01845 * 359.46144 * 5 4 3 7 7 C 1.50698 * 120.01297 * 180.29714 * 6 5 4 8 8 N 1.46910 * 109.47101 * 95.00291 * 7 6 5 9 9 C 1.46845 * 110.99641 * 45.79042 * 8 7 6 10 10 C 1.53041 * 109.52483 * 185.83926 * 9 8 7 11 11 C 1.53118 * 109.27727 * 300.82530 * 10 9 8 12 12 C 1.50698 * 109.57684 * 177.58899 * 11 10 9 13 13 H 1.07999 * 119.99691 * 240.28812 * 12 11 10 14 14 C 1.37875 * 120.00294 * 60.27997 * 12 11 10 15 15 N 1.31523 * 119.99654 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00288 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47151 * 60.00180 * 16 14 12 18 18 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47367 * 300.00125 * 16 14 12 20 20 C 1.53125 * 109.16231 * 57.64896 * 11 10 9 21 21 C 1.46847 * 110.99846 * 169.99967 * 8 7 6 22 22 N 1.31817 * 119.97620 * 0.27979 * 6 5 4 23 23 N 1.28347 * 122.25792 * 359.97438 * 22 6 5 24 24 H 1.09002 * 109.46616 * 59.99973 * 1 2 3 25 25 H 1.08998 * 109.46898 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.46972 * 300.00209 * 1 2 3 27 27 H 1.08000 * 121.03994 * 0.02562 * 4 3 2 28 28 H 1.08002 * 120.99348 * 179.74347 * 5 4 3 29 29 H 1.09002 * 109.47578 * 215.00003 * 7 6 5 30 30 H 1.09001 * 109.47364 * 335.00900 * 7 6 5 31 31 H 1.09004 * 109.46492 * 305.85946 * 9 8 7 32 32 H 1.09003 * 109.46224 * 65.82580 * 9 8 7 33 33 H 1.08989 * 109.50511 * 180.87723 * 10 9 8 34 34 H 1.09004 * 109.52868 * 60.78118 * 10 9 8 35 35 H 1.09003 * 109.52243 * 297.74633 * 11 10 9 36 36 H 0.97003 * 119.99898 * 180.02562 * 15 14 12 37 37 H 1.08997 * 109.49911 * 182.40668 * 20 11 10 38 38 H 1.08997 * 109.53199 * 62.30796 * 20 11 10 39 39 H 1.08999 * 109.46160 * 294.17560 * 21 8 7 40 40 H 1.08996 * 109.46253 * 54.16232 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4357 1.2854 -0.0059 5 6 4.0167 2.5440 0.0000 6 6 3.1778 3.6493 0.0000 7 6 3.7614 5.0387 -0.0005 8 7 3.8394 5.5367 -1.3804 9 6 2.5901 5.2739 -2.1060 10 6 2.7578 5.6722 -3.5741 11 6 3.1152 7.1587 -3.6570 12 6 3.3400 7.5445 -5.0963 13 1 4.2983 7.9330 -5.4078 14 6 2.3223 7.4014 -6.0154 15 7 1.1551 6.9287 -5.6359 16 14 2.6011 7.8790 -7.7996 17 1 3.7095 7.0663 -8.3622 18 1 1.3608 7.6316 -8.5780 19 1 2.9546 9.3192 -7.8772 20 6 4.3932 7.4140 -2.8532 21 6 4.1780 6.9653 -1.4059 22 7 1.8701 3.4836 0.0000 23 7 1.3270 2.3207 -0.0005 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 4.0424 0.3919 -0.0110 28 1 5.0904 2.6609 0.0000 29 1 3.1262 5.6999 0.5890 30 1 4.7610 5.0131 0.4335 31 1 2.3496 4.2126 -2.0427 32 1 1.7827 5.8562 -1.6617 33 1 1.8255 5.4916 -4.1089 34 1 3.5555 5.0805 -4.0233 35 1 2.3001 7.7529 -3.2436 36 1 0.4392 6.8276 -6.2826 37 1 4.6291 8.4780 -2.8730 38 1 5.2173 6.8503 -3.2902 39 1 3.3632 7.5396 -0.9650 40 1 5.0910 7.1325 -0.8345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397182199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:31 Heat of formation + Delta-G solvation = 1.351739 kcal Electronic energy + Delta-G solvation = -21606.121236 eV Core-core repulsion = 18420.854261 eV Total energy + Delta-G solvation = -3185.266975 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.34993 -40.04350 -39.23178 -36.05576 -34.39969 -33.75142 -32.19612 -31.44148 -28.78320 -28.41147 -26.60721 -25.00791 -24.27191 -23.62243 -22.56351 -20.34543 -19.63967 -18.71124 -18.45215 -17.47769 -17.00020 -16.82303 -16.34668 -15.71153 -15.52797 -15.19892 -15.09891 -14.83504 -14.75892 -14.33842 -14.14224 -13.69098 -13.27568 -13.06212 -12.94217 -12.83361 -12.56678 -12.52850 -12.43572 -12.14129 -11.97523 -11.86059 -11.36661 -11.21787 -10.79658 -10.67742 -10.60585 -10.37896 -10.11477 -9.21881 -8.07283 -6.21795 -0.19717 -0.05419 1.40971 1.42811 1.50338 1.89417 2.40452 2.44065 2.98497 3.17914 3.20864 3.37296 3.63358 3.96854 4.03467 4.21191 4.29443 4.33789 4.34931 4.37948 4.47411 4.55493 4.64827 4.69906 4.73774 4.79676 4.87187 4.98795 5.00859 5.12685 5.18213 5.24830 5.33940 5.56364 5.61852 5.94693 5.97468 5.99882 6.20561 6.28983 6.39887 6.91348 7.46564 7.62982 8.97119 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021138 B = 0.004329 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.300991 B = 6466.335828 C = 7367.169640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.307 6.307 3 C 0.241 3.759 4 C -0.130 4.130 5 C -0.057 4.057 6 C 0.037 3.963 7 C 0.110 3.890 8 N -0.529 5.529 9 C 0.082 3.918 10 C -0.093 4.093 11 C 0.043 3.957 12 C -0.532 4.532 13 H 0.056 0.944 14 C 0.009 3.991 15 N -0.922 5.922 16 Si 0.955 3.045 17 H -0.270 1.270 18 H -0.287 1.287 19 H -0.269 1.269 20 C -0.099 4.099 21 C 0.066 3.934 22 N -0.239 5.239 23 N -0.333 5.333 24 H 0.049 0.951 25 H 0.133 0.867 26 H 0.059 0.941 27 H 0.191 0.809 28 H 0.200 0.800 29 H 0.048 0.952 30 H 0.136 0.864 31 H 0.049 0.951 32 H 0.006 0.994 33 H 0.051 0.949 34 H 0.030 0.970 35 H -0.016 1.016 36 H 0.258 0.742 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.021 0.979 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.634 -12.202 14.692 20.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.211 6.211 3 C 0.055 3.945 4 C -0.159 4.159 5 C -0.085 4.085 6 C -0.111 4.111 7 C -0.019 4.019 8 N -0.254 5.254 9 C -0.046 4.046 10 C -0.132 4.132 11 C 0.025 3.975 12 C -0.570 4.570 13 H 0.074 0.926 14 C -0.189 4.189 15 N -0.562 5.562 16 Si 0.780 3.220 17 H -0.195 1.195 18 H -0.213 1.213 19 H -0.194 1.194 20 C -0.136 4.136 21 C -0.062 4.062 22 N -0.082 5.082 23 N -0.188 5.188 24 H 0.068 0.932 25 H 0.151 0.849 26 H 0.077 0.923 27 H 0.209 0.791 28 H 0.217 0.783 29 H 0.066 0.934 30 H 0.154 0.846 31 H 0.067 0.933 32 H 0.025 0.975 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.002 0.998 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.039 0.961 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.381 -12.145 14.396 19.588 hybrid contribution -0.312 0.181 -0.883 0.954 sum 5.069 -11.964 13.514 18.747 Atomic orbital electron populations 1.23166 0.75662 1.05282 1.02187 1.86216 1.24388 1.22867 1.87619 1.21888 0.92318 0.87066 0.93221 1.21987 0.91425 1.01341 1.01182 1.22610 1.04008 0.89754 0.92155 1.22895 0.91054 0.98880 0.98308 1.21125 1.02174 0.88518 0.90071 1.62212 1.32708 1.17720 1.12802 1.21884 0.89542 0.98271 0.94923 1.21414 1.00326 0.98347 0.93084 1.18669 0.92810 0.92104 0.93965 1.21598 0.98205 1.42202 0.95041 0.92597 1.25810 0.94924 0.95210 1.02988 1.70057 1.03753 1.46774 1.35582 0.85663 0.77346 0.79022 0.79947 1.19495 1.21258 1.19402 1.21537 0.98306 0.99621 0.94176 1.22131 1.00599 0.86012 0.97433 1.72704 1.12916 1.14071 1.08485 1.72929 1.33089 0.94823 1.17988 0.93232 0.84852 0.92259 0.79139 0.78287 0.93371 0.84637 0.93299 0.97525 0.93003 0.95124 0.99770 0.93253 0.92315 0.92439 0.96092 0.87562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.40 113.37 1.18 1.78 16 2 O -0.31 -7.17 10.49 -90.21 -0.95 -8.11 16 3 C 0.24 6.40 7.57 84.86 0.64 7.04 16 4 C -0.13 -2.57 10.16 22.61 0.23 -2.34 16 5 C -0.06 -1.11 9.85 22.49 0.22 -0.89 16 6 C 0.04 1.01 4.99 42.69 0.21 1.22 16 7 C 0.11 2.78 5.61 85.55 0.48 3.26 16 8 N -0.53 -17.78 4.80 -900.89 -4.32 -22.11 16 9 C 0.08 3.52 4.73 86.33 0.41 3.93 16 10 C -0.09 -4.77 5.12 30.65 0.16 -4.61 16 11 C 0.04 2.25 2.16 -11.46 -0.02 2.22 16 12 C -0.53 -30.24 8.56 25.60 0.22 -30.03 16 13 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 14 C 0.01 0.50 5.31 84.65 0.45 0.95 16 15 N -0.92 -55.96 11.38 21.45 0.24 -55.71 16 16 Si 0.95 44.84 29.54 68.60 2.03 46.87 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 20 C -0.10 -4.02 5.32 30.65 0.16 -3.86 16 21 C 0.07 2.15 5.42 86.33 0.47 2.62 16 22 N -0.24 -8.15 9.82 -47.59 -0.47 -8.62 16 23 N -0.33 -10.92 10.41 -170.22 -1.77 -12.69 16 24 H 0.05 1.08 8.11 -2.39 -0.02 1.06 16 25 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 1.14 8.11 -2.39 -0.02 1.12 16 27 H 0.19 2.26 8.06 -2.91 -0.02 2.24 16 28 H 0.20 2.13 8.06 -2.91 -0.02 2.10 16 29 H 0.05 1.28 8.08 -2.39 -0.02 1.27 16 30 H 0.14 2.23 8.05 -2.39 -0.02 2.21 16 31 H 0.05 2.12 5.76 -2.39 -0.01 2.11 16 32 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.05 3.04 6.18 -2.39 -0.01 3.03 16 34 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 35 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 36 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 37 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.02 0.72 8.14 -2.39 -0.02 0.71 16 40 H 0.11 2.60 8.12 -2.39 -0.02 2.58 16 Total: -1.00 -72.60 324.53 0.59 -72.01 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 1.02 Total: 7.08 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 4.81 Total: -18.71 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -6.32 Total: -99.13 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.95 Total: -8.11 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -72.60 0.59 -72.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397182199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.365 kcal (2) G-P(sol) polarization free energy of solvation -72.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds