Wall clock time and date at job start Mon Mar 30 2020 02:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 119.99841 * 2 1 4 4 H 1.48506 * 109.47044 * 269.99673 * 3 2 1 5 5 H 1.48495 * 109.47277 * 29.99835 * 3 2 1 6 6 H 1.48500 * 109.47192 * 150.00207 * 3 2 1 7 7 C 1.37885 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99676 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99564 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.49823 * 300.06642 * 9 7 2 11 11 C 1.53036 * 109.49608 * 60.16292 * 9 7 2 12 12 C 1.53043 * 109.53616 * 181.31272 * 11 9 7 13 13 C 1.53622 * 109.24272 * 298.50977 * 12 11 9 14 14 N 1.46926 * 108.53996 * 54.85852 * 13 12 11 15 15 C 1.34779 * 120.63215 * 126.36445 * 14 13 12 16 16 O 1.21280 * 120.00338 * 179.71427 * 15 14 13 17 17 C 1.50698 * 119.99957 * 359.72284 * 15 14 13 18 18 H 1.09000 * 115.60905 * 325.90762 * 17 15 14 19 19 C 1.49176 * 117.66476 * 110.98618 * 17 15 14 20 20 H 1.09003 * 116.23346 * 0.94615 * 19 17 15 21 21 C 1.52487 * 121.53978 * 216.82549 * 19 17 15 22 22 C 1.52874 * 110.03265 * 311.50759 * 21 19 17 23 23 C 1.53301 * 108.73970 * 303.99828 * 22 21 19 24 24 C 1.52879 * 108.58161 * 74.35081 * 23 22 21 25 25 C 1.52075 * 61.32616 * 107.56426 * 19 17 15 26 26 H 1.08990 * 117.25447 * 253.34960 * 25 19 17 27 27 C 1.46925 * 118.73827 * 306.09009 * 14 13 12 28 28 H 0.97001 * 120.00738 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46395 * 301.33666 * 11 9 7 30 30 H 1.09000 * 109.45848 * 61.30943 * 11 9 7 31 31 H 1.09002 * 109.49477 * 58.59152 * 12 11 9 32 32 H 1.09008 * 109.49524 * 178.65338 * 12 11 9 33 33 H 1.08996 * 109.74502 * 295.11872 * 13 12 11 34 34 H 1.08997 * 109.66201 * 174.54637 * 13 12 11 35 35 H 1.08998 * 110.48355 * 190.76891 * 21 19 17 36 36 H 1.08999 * 108.52744 * 71.02252 * 21 19 17 37 37 H 1.09002 * 109.61727 * 184.17623 * 22 21 19 38 38 H 1.08998 * 109.61587 * 63.81744 * 22 21 19 39 39 H 1.08997 * 109.61828 * 194.08130 * 23 22 21 40 40 H 1.09002 * 109.61999 * 314.62668 * 23 22 21 41 41 H 1.09004 * 109.35389 * 65.69118 * 24 23 22 42 42 H 1.08999 * 109.35673 * 185.40668 * 24 23 22 43 43 H 1.08998 * 109.58705 * 173.64885 * 27 14 13 44 44 H 1.08996 * 109.58731 * 293.93258 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0017 10 1 0.6237 -2.5563 0.8912 11 6 0.3736 -2.5835 -1.2493 12 6 -0.4167 -3.8939 -1.2327 13 6 0.5635 -5.0766 -1.2496 14 7 1.5002 -4.9231 -0.1280 15 6 1.6760 -5.9204 0.7613 16 8 2.4560 -5.7834 1.6798 17 6 0.9036 -7.2060 0.6143 18 1 -0.1055 -7.1062 0.2143 19 6 1.6646 -8.4317 0.2350 20 1 2.7401 -8.3104 0.1056 21 6 1.0710 -9.4827 -0.6969 22 6 -0.3426 -9.8468 -0.2427 23 6 -0.2865 -10.3113 1.2172 24 6 -0.0839 -9.0872 2.1103 25 6 1.1479 -8.3052 1.6597 26 1 1.8803 -8.0968 2.4396 27 6 2.2461 -3.6639 0.0021 28 1 -0.4851 0.8400 -0.0004 29 1 -0.3189 -1.7419 -1.2646 30 1 1.0041 -2.5511 -2.1379 31 1 -1.0288 -3.9382 -0.3319 32 1 -1.0593 -3.9424 -2.1119 33 1 1.1162 -5.0834 -2.1889 34 1 0.0129 -6.0109 -1.1404 35 1 1.6893 -10.3803 -0.7026 36 1 1.0297 -9.0686 -1.7043 37 1 -0.7321 -10.6505 -0.8677 38 1 -0.9895 -8.9734 -0.3243 39 1 -1.2218 -10.8054 1.4802 40 1 0.5456 -11.0027 1.3496 41 1 -0.9624 -8.4450 2.0479 42 1 0.0539 -9.4114 3.1418 43 1 2.8060 -3.6659 0.9373 44 1 2.9350 -3.5591 -0.8360 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397592941.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:30 Heat of formation + Delta-G solvation = -37.982567 kcal Electronic energy + Delta-G solvation = -22299.236492 eV Core-core repulsion = 19215.804197 eV Total energy + Delta-G solvation = -3083.432295 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.52563 -38.62617 -36.61685 -33.53679 -33.16905 -31.28760 -30.90764 -30.20957 -26.08630 -25.02126 -24.15391 -22.68067 -22.02205 -21.54346 -19.58369 -18.76251 -18.10707 -17.12141 -16.27564 -15.63037 -15.15591 -14.71998 -14.46949 -14.18333 -14.09686 -13.66005 -13.51457 -13.25588 -12.80231 -12.72346 -12.42445 -12.24852 -12.01239 -11.97886 -11.75384 -11.28122 -11.04926 -10.96373 -10.83412 -10.73361 -10.41991 -10.30392 -9.97441 -9.91080 -9.79423 -9.71746 -9.45696 -9.20551 -8.81387 -8.38218 -7.86545 -6.01640 -4.08741 2.89764 3.29773 3.36590 3.40143 3.51249 3.86035 4.42423 4.49166 4.61174 4.68735 4.87229 4.91896 5.03923 5.18826 5.23944 5.28382 5.39275 5.44640 5.46968 5.55014 5.66028 5.74908 5.78517 5.81057 5.90620 5.95405 6.06796 6.13594 6.14312 6.17695 6.33328 6.33916 6.41734 6.50042 6.67218 6.82337 6.99740 7.18189 7.34294 7.69381 7.92725 8.05117 8.07929 8.38068 8.70269 8.95022 9.56095 11.03908 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.035964 B = 0.003920 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.367701 B = 7141.820678 C = 7398.139492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.135 4.135 13 C 0.110 3.890 14 N -0.599 5.599 15 C 0.537 3.463 16 O -0.553 6.553 17 C -0.179 4.179 18 H 0.121 0.879 19 C -0.113 4.113 20 H 0.099 0.901 21 C -0.088 4.088 22 C -0.125 4.125 23 C -0.118 4.118 24 C -0.089 4.089 25 C -0.120 4.120 26 H 0.115 0.885 27 C 0.117 3.883 28 H 0.260 0.740 29 H 0.095 0.905 30 H 0.035 0.965 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.663 -18.967 -2.729 19.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.173 4.173 13 C -0.013 4.013 14 N -0.330 5.330 15 C 0.324 3.676 16 O -0.432 6.432 17 C -0.200 4.200 18 H 0.139 0.861 19 C -0.132 4.132 20 H 0.117 0.883 21 C -0.126 4.126 22 C -0.162 4.162 23 C -0.156 4.156 24 C -0.127 4.127 25 C -0.138 4.138 26 H 0.133 0.867 27 C -0.004 4.004 28 H 0.070 0.930 29 H 0.113 0.887 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.394 -18.735 -2.251 19.021 hybrid contribution 0.342 1.155 -0.183 1.219 sum -2.052 -17.580 -2.434 17.866 Atomic orbital electron populations 1.69869 1.05904 1.26467 1.50548 1.24935 0.94852 0.99074 0.94933 0.86579 0.79941 0.83341 0.78064 1.20689 1.21235 1.19848 1.21086 0.92998 0.90301 1.50898 0.92488 1.18968 0.92962 0.91156 0.94805 0.95273 1.21626 0.99443 0.95376 0.98559 1.22091 0.97632 0.96729 1.00898 1.21842 0.91424 0.98983 0.89048 1.48219 1.42244 1.15877 1.26646 1.19599 0.82185 0.84054 0.81725 1.90641 1.38215 1.81523 1.32864 1.21997 1.01337 0.89338 1.07322 0.86104 1.21302 0.99536 0.95893 0.96462 0.88322 1.20980 0.96154 0.97347 0.98096 1.21641 0.96964 1.01175 0.96439 1.21564 1.01568 0.97473 0.94951 1.21059 0.96121 0.96215 0.99269 1.22299 1.00397 0.98648 0.92504 0.86709 1.21998 0.95072 0.81915 1.01425 0.92983 0.88664 0.94604 0.92387 0.92541 0.92008 0.91018 0.90975 0.91469 0.91807 0.91754 0.91937 0.91670 0.91463 0.91322 0.90375 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.11 11.32 55.43 0.63 -24.48 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -14.08 8.56 -34.44 -0.29 -14.38 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.04 1.00 2.25 -91.65 -0.21 0.80 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 11 C -0.11 -2.53 4.96 -26.69 -0.13 -2.67 16 12 C -0.14 -2.43 6.10 -26.39 -0.16 -2.59 16 13 C 0.11 1.75 6.37 -3.49 -0.02 1.73 16 14 N -0.60 -11.45 2.97 -172.51 -0.51 -11.96 16 15 C 0.54 10.10 7.46 -10.99 -0.08 10.02 16 16 O -0.55 -12.38 15.67 5.56 0.09 -12.29 16 17 C -0.18 -2.50 4.17 -93.31 -0.39 -2.89 16 18 H 0.12 1.53 5.69 -51.93 -0.30 1.23 16 19 C -0.11 -1.33 5.51 -93.23 -0.51 -1.84 16 20 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 21 C -0.09 -0.79 6.01 -27.06 -0.16 -0.95 16 22 C -0.12 -1.01 5.69 -26.64 -0.15 -1.17 16 23 C -0.12 -0.96 5.93 -26.64 -0.16 -1.12 16 24 C -0.09 -0.89 5.83 -26.94 -0.16 -1.04 16 25 C -0.12 -1.50 5.82 -90.90 -0.53 -2.03 16 26 H 0.11 1.65 7.66 -51.93 -0.40 1.25 16 27 C 0.12 2.60 5.65 -3.71 -0.02 2.58 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.10 2.44 6.05 -51.93 -0.31 2.12 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.93 5.51 -51.93 -0.29 0.65 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.56 7.12 -51.93 -0.37 0.19 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.52 8.05 -51.93 -0.42 0.10 16 41 H 0.07 0.68 8.06 -51.93 -0.42 0.26 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.08 1.87 7.01 -51.93 -0.36 1.51 16 44 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 335.34 15.07 5.05 5.05 Total: -1.00 -30.05 335.34 -10.32 -40.37 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.48 Total: 1.01 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -3.07 Total: -13.91 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.12 Total: -36.44 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.09 Total: -12.29 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.05 -10.32 -40.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397592941.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.385 kcal (2) G-P(sol) polarization free energy of solvation -30.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds