Wall clock time and date at job start Mon Mar 30 2020 02:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 119.99841 * 2 1 4 4 H 1.48506 * 109.47044 * 269.99673 * 3 2 1 5 5 H 1.48495 * 109.47277 * 29.99835 * 3 2 1 6 6 H 1.48500 * 109.47192 * 150.00207 * 3 2 1 7 7 C 1.37885 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99676 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99564 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.49823 * 300.06642 * 9 7 2 11 11 C 1.53036 * 109.49608 * 60.16292 * 9 7 2 12 12 C 1.53043 * 109.53616 * 181.31272 * 11 9 7 13 13 C 1.53622 * 109.24272 * 298.50977 * 12 11 9 14 14 N 1.46926 * 108.53996 * 54.85852 * 13 12 11 15 15 C 1.34779 * 120.63215 * 126.36445 * 14 13 12 16 16 O 1.21280 * 120.00338 * 179.71427 * 15 14 13 17 17 C 1.50698 * 119.99957 * 359.72284 * 15 14 13 18 18 H 1.09000 * 115.60905 * 325.90762 * 17 15 14 19 19 C 1.49176 * 117.66476 * 110.98618 * 17 15 14 20 20 H 1.09003 * 116.23346 * 0.94615 * 19 17 15 21 21 C 1.52487 * 121.53978 * 216.82549 * 19 17 15 22 22 C 1.52874 * 110.03265 * 311.50759 * 21 19 17 23 23 C 1.53301 * 108.73970 * 303.99828 * 22 21 19 24 24 C 1.52879 * 108.58161 * 74.35081 * 23 22 21 25 25 C 1.52075 * 61.32616 * 107.56426 * 19 17 15 26 26 H 1.08990 * 117.25447 * 253.34960 * 25 19 17 27 27 C 1.46925 * 118.73827 * 306.09009 * 14 13 12 28 28 H 0.97001 * 120.00738 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46395 * 301.33666 * 11 9 7 30 30 H 1.09000 * 109.45848 * 61.30943 * 11 9 7 31 31 H 1.09002 * 109.49477 * 58.59152 * 12 11 9 32 32 H 1.09008 * 109.49524 * 178.65338 * 12 11 9 33 33 H 1.08996 * 109.74502 * 295.11872 * 13 12 11 34 34 H 1.08997 * 109.66201 * 174.54637 * 13 12 11 35 35 H 1.08998 * 110.48355 * 190.76891 * 21 19 17 36 36 H 1.08999 * 108.52744 * 71.02252 * 21 19 17 37 37 H 1.09002 * 109.61727 * 184.17623 * 22 21 19 38 38 H 1.08998 * 109.61587 * 63.81744 * 22 21 19 39 39 H 1.08997 * 109.61828 * 194.08130 * 23 22 21 40 40 H 1.09002 * 109.61999 * 314.62668 * 23 22 21 41 41 H 1.09004 * 109.35389 * 65.69118 * 24 23 22 42 42 H 1.08999 * 109.35673 * 185.40668 * 24 23 22 43 43 H 1.08998 * 109.58705 * 173.64885 * 27 14 13 44 44 H 1.08996 * 109.58731 * 293.93258 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0017 10 1 0.6237 -2.5563 0.8912 11 6 0.3736 -2.5835 -1.2493 12 6 -0.4167 -3.8939 -1.2327 13 6 0.5635 -5.0766 -1.2496 14 7 1.5002 -4.9231 -0.1280 15 6 1.6760 -5.9204 0.7613 16 8 2.4560 -5.7834 1.6798 17 6 0.9036 -7.2060 0.6143 18 1 -0.1055 -7.1062 0.2143 19 6 1.6646 -8.4317 0.2350 20 1 2.7401 -8.3104 0.1056 21 6 1.0710 -9.4827 -0.6969 22 6 -0.3426 -9.8468 -0.2427 23 6 -0.2865 -10.3113 1.2172 24 6 -0.0839 -9.0872 2.1103 25 6 1.1479 -8.3052 1.6597 26 1 1.8803 -8.0968 2.4396 27 6 2.2461 -3.6639 0.0021 28 1 -0.4851 0.8400 -0.0004 29 1 -0.3189 -1.7419 -1.2646 30 1 1.0041 -2.5511 -2.1379 31 1 -1.0288 -3.9382 -0.3319 32 1 -1.0593 -3.9424 -2.1119 33 1 1.1162 -5.0834 -2.1889 34 1 0.0129 -6.0109 -1.1404 35 1 1.6893 -10.3803 -0.7026 36 1 1.0297 -9.0686 -1.7043 37 1 -0.7321 -10.6505 -0.8677 38 1 -0.9895 -8.9734 -0.3243 39 1 -1.2218 -10.8054 1.4802 40 1 0.5456 -11.0027 1.3496 41 1 -0.9624 -8.4450 2.0479 42 1 0.0539 -9.4114 3.1418 43 1 2.8060 -3.6659 0.9373 44 1 2.9350 -3.5591 -0.8360 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397592941.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:29 Heat of formation + Delta-G solvation = -53.710912 kcal Electronic energy + Delta-G solvation = -22299.918524 eV Core-core repulsion = 19215.804197 eV Total energy + Delta-G solvation = -3084.114327 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.73969 -39.91038 -38.23250 -35.38802 -34.11488 -33.01741 -31.98995 -31.64395 -27.59884 -26.75157 -25.41183 -23.52189 -23.39926 -22.94899 -21.13665 -20.00341 -19.27785 -18.58944 -18.10083 -17.07030 -16.71959 -16.06528 -15.96568 -15.15836 -15.06874 -14.91032 -14.79668 -14.70158 -14.58812 -14.13034 -13.75623 -13.61705 -13.18637 -13.09580 -12.87634 -12.76386 -12.67189 -12.58550 -12.05831 -12.00560 -11.87667 -11.67420 -11.60828 -11.31984 -11.13217 -10.90920 -10.84149 -10.72179 -10.53338 -10.43968 -9.51626 -8.12729 -6.28341 1.39388 1.40592 1.49365 1.51610 2.05806 2.42081 2.79563 3.13606 3.42814 3.68769 3.85643 3.88192 4.05534 4.13019 4.21058 4.22808 4.32580 4.38876 4.43525 4.52144 4.58718 4.64456 4.71786 4.78635 4.83767 4.86873 4.95056 5.00674 5.09330 5.09780 5.12837 5.26090 5.29817 5.35110 5.39090 5.46039 5.46995 5.54437 5.58227 5.58932 5.90242 6.10777 6.31828 6.54324 6.80732 7.19822 7.39884 8.91084 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.035964 B = 0.003920 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.367701 B = 7141.820678 C = 7398.139492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.018 3.982 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.051 0.949 9 C 0.042 3.958 10 H -0.016 1.016 11 C -0.105 4.105 12 C -0.127 4.127 13 C 0.112 3.888 14 N -0.603 5.603 15 C 0.528 3.472 16 O -0.600 6.600 17 C -0.186 4.186 18 H 0.143 0.857 19 C -0.095 4.095 20 H 0.084 0.916 21 C -0.085 4.085 22 C -0.124 4.124 23 C -0.115 4.115 24 C -0.087 4.087 25 C -0.121 4.121 26 H 0.087 0.913 27 C 0.129 3.871 28 H 0.262 0.738 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.049 0.951 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.614 -21.104 -4.565 21.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.782 3.218 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.070 0.930 9 C 0.023 3.977 10 H 0.002 0.998 11 C -0.143 4.143 12 C -0.165 4.165 13 C -0.010 4.010 14 N -0.334 5.334 15 C 0.318 3.682 16 O -0.483 6.483 17 C -0.206 4.206 18 H 0.160 0.840 19 C -0.114 4.114 20 H 0.102 0.898 21 C -0.122 4.122 22 C -0.161 4.161 23 C -0.152 4.152 24 C -0.125 4.125 25 C -0.140 4.140 26 H 0.105 0.895 27 C 0.007 3.993 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.363 -20.892 -4.111 21.557 hybrid contribution 0.667 1.842 0.456 2.011 sum -2.696 -19.050 -3.655 19.584 Atomic orbital electron populations 1.70003 1.07105 1.27280 1.50779 1.25695 0.95712 1.02294 0.94450 0.85584 0.78554 0.79199 0.78493 1.19505 1.20810 1.19767 1.21437 0.93050 0.91935 1.51488 0.93045 1.18867 0.93122 0.91585 0.94162 0.99759 1.21421 0.98762 0.97111 0.97048 1.21999 0.97769 0.94907 1.01870 1.22082 0.90727 0.99632 0.88545 1.48311 1.42532 1.14703 1.27835 1.20506 0.81779 0.85336 0.80581 1.90612 1.40410 1.82583 1.34671 1.21936 1.01748 0.87304 1.09624 0.83972 1.21387 0.98708 0.94891 0.96379 0.89806 1.21040 0.96841 0.96718 0.97570 1.21667 0.96204 1.01794 0.96478 1.21564 1.02521 0.96446 0.94668 1.21087 0.94506 0.96799 1.00067 1.22375 1.01073 0.98215 0.92350 0.89458 1.21561 0.94586 0.82974 1.00227 0.92866 0.91855 0.94327 0.93792 0.89025 0.90016 0.87078 0.89548 0.90342 0.89831 0.91969 0.90390 0.91337 0.91459 0.90929 0.93245 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.87 11.32 21.45 0.24 -52.63 16 2 C 0.02 0.99 5.30 84.66 0.45 1.44 16 3 Si 0.96 44.20 29.54 68.60 2.03 46.22 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.54 -30.70 8.56 25.60 0.22 -30.48 16 8 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 9 C 0.04 2.18 2.25 -11.46 -0.03 2.15 16 10 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 11 C -0.11 -4.82 4.96 30.62 0.15 -4.66 16 12 C -0.13 -4.38 6.10 30.82 0.19 -4.20 16 13 C 0.11 3.26 6.37 86.51 0.55 3.81 16 14 N -0.60 -23.06 2.97 -818.09 -2.43 -25.49 16 15 C 0.53 20.10 7.46 87.66 0.65 20.75 16 16 O -0.60 -28.19 15.67 -3.03 -0.05 -28.24 16 17 C -0.19 -4.92 4.17 -12.54 -0.05 -4.98 16 18 H 0.14 3.14 5.69 -2.39 -0.01 3.13 16 19 C -0.09 -2.04 5.51 -12.49 -0.07 -2.11 16 20 H 0.08 2.07 8.13 -2.39 -0.02 2.05 16 21 C -0.08 -1.18 6.01 30.38 0.18 -1.00 16 22 C -0.12 -1.48 5.69 30.65 0.17 -1.31 16 23 C -0.11 -1.47 5.93 30.65 0.18 -1.29 16 24 C -0.09 -1.55 5.83 30.46 0.18 -1.38 16 25 C -0.12 -2.94 5.82 -10.98 -0.06 -3.00 16 26 H 0.09 2.60 7.66 -2.39 -0.02 2.58 16 27 C 0.13 5.96 5.65 86.36 0.49 6.45 16 28 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.06 3.31 6.05 -2.39 -0.01 3.30 16 30 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 33 H 0.08 2.13 8.14 -2.39 -0.02 2.12 16 34 H 0.11 2.42 5.51 -2.39 -0.01 2.41 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.06 0.80 7.12 -2.39 -0.02 0.78 16 39 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.07 0.85 8.05 -2.39 -0.02 0.83 16 41 H 0.07 1.21 8.06 -2.38 -0.02 1.19 16 42 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.05 2.53 7.01 -2.39 -0.02 2.51 16 44 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -69.39 335.34 3.97 -65.42 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.96 Total: 14.50 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 3.21 Total: -19.79 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -2.18 Total: -78.12 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.05 Total: -28.24 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -69.39 3.97 -65.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397592941.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.713 kcal (2) G-P(sol) polarization free energy of solvation -69.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds