Wall clock time and date at job start Mon Mar 30 2020 02:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47001 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47286 * 120.00136 * 3 2 1 6 6 H 1.48507 * 109.46736 * 239.99940 * 3 2 1 7 7 C 1.37879 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00134 * 187.13091 * 7 2 1 9 9 C 1.50696 * 119.99802 * 7.13436 * 7 2 1 10 10 C 1.53002 * 115.55193 * 275.21021 * 9 7 2 11 11 N 1.46505 * 109.47002 * 297.93943 * 10 9 7 12 12 C 1.34775 * 119.99989 * 184.66830 * 11 10 9 13 13 O 1.21276 * 120.00144 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99901 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.47020 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.46922 * 65.00178 * 15 14 12 17 17 C 1.53011 * 117.49590 * 248.74677 * 16 15 14 18 18 C 1.52997 * 117.49948 * 180.08565 * 16 15 14 19 19 C 1.53003 * 109.47169 * 184.99396 * 15 14 12 20 20 C 1.53002 * 117.49622 * 128.74805 * 19 15 14 21 21 C 1.53005 * 117.49533 * 60.09343 * 19 15 14 22 22 C 1.53008 * 117.49853 * 129.54157 * 9 7 2 23 23 C 1.53000 * 117.50221 * 60.88313 * 9 7 2 24 24 H 0.97004 * 120.00131 * 175.40434 * 1 2 3 25 25 H 1.08996 * 109.47248 * 57.93926 * 10 9 7 26 26 H 1.08998 * 109.47484 * 177.94245 * 10 9 7 27 27 H 0.97003 * 120.00045 * 4.67435 * 11 10 9 28 28 H 1.09005 * 109.47025 * 299.99700 * 14 12 11 29 29 H 1.08995 * 109.47362 * 59.99988 * 14 12 11 30 30 H 1.09000 * 109.47406 * 305.00045 * 15 14 12 31 31 H 1.08999 * 115.55544 * 34.41364 * 16 15 14 32 32 H 1.09001 * 117.49796 * 359.97438 * 17 16 15 33 33 H 1.08994 * 117.49566 * 145.02059 * 17 16 15 34 34 H 1.08997 * 117.49912 * 214.97439 * 18 16 15 35 35 H 1.09002 * 117.50160 * 359.97438 * 18 16 15 36 36 H 1.08993 * 115.55154 * 274.42168 * 19 15 14 37 37 H 1.08998 * 117.49771 * 0.02562 * 20 19 15 38 38 H 1.08999 * 117.49929 * 145.02522 * 20 19 15 39 39 H 1.09004 * 117.49486 * 214.98107 * 21 19 15 40 40 H 1.09000 * 117.49888 * 359.97001 * 21 19 15 41 41 H 1.08998 * 117.49575 * 0.02562 * 22 9 7 42 42 H 1.08997 * 117.50012 * 145.01699 * 22 9 7 43 43 H 1.09003 * 117.50343 * 214.97736 * 23 9 7 44 44 H 1.08997 * 117.49643 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6964 1.2124 6 1 3.1030 1.6963 -1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0783 -1.1977 0.1166 9 6 1.2597 -2.4941 -0.1610 10 6 0.6775 -3.0853 1.1246 11 7 1.7650 -3.3915 2.0574 12 6 1.4975 -4.0104 3.2244 13 8 0.3567 -4.3142 3.5021 14 6 2.6160 -4.3248 4.1842 15 6 2.0457 -5.0217 5.4211 16 6 1.4638 -6.3785 5.0192 17 6 -0.0556 -6.5445 5.0902 18 6 0.8393 -7.2343 6.1230 19 6 3.1601 -5.2291 6.4488 20 6 2.8995 -4.7524 7.8792 21 6 3.8713 -3.9832 6.9808 22 6 1.7685 -3.4728 -1.2214 23 6 0.4684 -2.6991 -1.4543 24 1 -0.4850 -0.8374 -0.0673 25 1 -0.0008 -2.3646 1.5812 26 1 0.1322 -3.9993 0.8898 27 1 2.6774 -3.1487 1.8351 28 1 3.3384 -4.9805 3.6979 29 1 3.1087 -3.3998 4.4835 30 1 1.2602 -4.4040 5.8565 31 1 1.9897 -6.8968 4.2174 32 1 -0.6405 -5.6872 5.4237 33 1 -0.5291 -7.1722 4.3354 34 1 0.9540 -8.3155 6.0472 35 1 0.8434 -6.8309 7.1357 36 1 3.7561 -6.1325 6.3201 37 1 1.9342 -4.2915 8.0880 38 1 3.3246 -5.3420 8.6914 39 1 4.9353 -4.0671 7.2023 40 1 3.5456 -3.0159 6.5982 41 1 2.6422 -3.1764 -1.8019 42 1 1.6882 -4.5377 -1.0033 43 1 -0.4668 -3.2553 -1.3895 44 1 0.4862 -1.8934 -2.1882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403972529.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:16 Heat of formation + Delta-G solvation = 14.642537 kcal Electronic energy + Delta-G solvation = -21815.033424 eV Core-core repulsion = 18733.883125 eV Total energy + Delta-G solvation = -3081.150299 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.66741 -38.15554 -36.86719 -36.05633 -33.27327 -31.93856 -31.60718 -26.93306 -25.08768 -24.33186 -22.43969 -22.20232 -21.38197 -21.28999 -19.96875 -19.69421 -19.23260 -16.96664 -16.31330 -15.81122 -15.54355 -15.01484 -14.69593 -14.26069 -14.06120 -13.78161 -13.52247 -13.11330 -12.73555 -12.43451 -12.21174 -12.13700 -11.63203 -11.63083 -11.42165 -11.27292 -10.99335 -10.95091 -10.82453 -10.50755 -10.33627 -10.22379 -10.16281 -9.86398 -9.76531 -9.65125 -9.16203 -8.68395 -8.48511 -8.40242 -8.14254 -6.41275 -4.17270 3.26705 3.38533 3.39955 3.58758 3.64742 3.89596 4.05884 4.45483 4.55627 4.78348 4.84262 4.97136 5.07353 5.14118 5.21278 5.26923 5.36031 5.40360 5.44846 5.54675 5.60765 5.76143 5.80217 5.82881 5.85611 5.94585 6.02469 6.04447 6.13975 6.21554 6.23414 6.25034 6.39804 6.40771 6.52026 6.52863 6.68604 6.84651 7.16732 7.18874 7.29990 8.15603 8.29164 8.33704 8.79838 8.91919 9.59063 10.98055 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019368 B = 0.004398 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.305704 B = 6365.601995 C = 7238.070750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.030 3.970 3 Si 1.066 2.934 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.577 4.577 8 H 0.053 0.947 9 C 0.006 3.994 10 C 0.161 3.839 11 N -0.705 5.705 12 C 0.501 3.499 13 O -0.548 6.548 14 C -0.133 4.133 15 C -0.008 4.008 16 C -0.134 4.134 17 C -0.146 4.146 18 C -0.191 4.191 19 C -0.140 4.140 20 C -0.180 4.180 21 C -0.183 4.183 22 C -0.194 4.194 23 C -0.173 4.173 24 H 0.276 0.724 25 H 0.061 0.939 26 H 0.038 0.962 27 H 0.401 0.599 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.613 -10.612 10.924 16.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.894 3.106 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.614 4.614 8 H 0.071 0.929 9 C 0.005 3.995 10 C 0.037 3.963 11 N -0.354 5.354 12 C 0.287 3.713 13 O -0.427 6.427 14 C -0.173 4.173 15 C -0.027 4.027 16 C -0.152 4.152 17 C -0.183 4.183 18 C -0.228 4.228 19 C -0.159 4.159 20 C -0.217 4.217 21 C -0.220 4.220 22 C -0.231 4.231 23 C -0.211 4.211 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.235 0.765 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.567 -9.162 11.165 15.479 hybrid contribution 0.706 -1.547 -0.355 1.737 sum 6.274 -10.710 10.810 16.460 Atomic orbital electron populations 1.70734 1.06839 1.31716 1.44049 1.25763 0.96506 1.02284 0.93162 0.83584 0.74962 0.75530 0.76496 1.20793 1.21475 1.21448 1.21169 0.94102 0.89676 1.56479 0.92923 1.19339 0.98913 0.95469 0.85777 1.20955 0.88349 0.97132 0.89868 1.45913 1.12106 1.58750 1.18636 1.20550 0.90354 0.78079 0.82335 1.90648 1.22509 1.53512 1.75996 1.21686 0.97695 1.02225 0.95655 1.20059 0.95261 0.94608 0.92783 1.22035 0.96548 0.96368 1.00224 1.22773 0.92902 1.02089 1.00493 1.22983 1.06414 0.98031 0.95352 1.22292 1.00589 0.98265 0.94709 1.22997 1.00996 1.04140 0.93554 1.22989 0.97937 0.96603 1.04497 1.22887 0.97878 0.95538 1.06801 1.22744 0.93318 1.02173 1.02892 0.91277 0.92106 0.94345 0.76526 0.89372 0.89103 0.90366 0.88765 0.88615 0.89753 0.89684 0.89187 0.87831 0.88943 0.89134 0.88948 0.88637 0.90105 0.91477 0.91351 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 13.57 55.43 0.75 -25.15 16 2 C 0.03 0.80 5.39 -17.82 -0.10 0.70 16 3 Si 1.07 24.05 29.91 -169.99 -5.08 18.96 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.58 -14.88 8.44 -34.44 -0.29 -15.17 16 8 H 0.05 1.35 7.82 -52.49 -0.41 0.93 16 9 C 0.01 0.14 0.99 -155.66 -0.15 -0.02 16 10 C 0.16 3.60 5.43 -4.04 -0.02 3.58 16 11 N -0.70 -13.56 5.46 -60.29 -0.33 -13.89 16 12 C 0.50 8.97 7.58 -10.99 -0.08 8.89 16 13 O -0.55 -11.31 13.47 5.56 0.07 -11.24 16 14 C -0.13 -1.76 5.07 -27.88 -0.14 -1.90 16 15 C -0.01 -0.10 1.82 -90.62 -0.16 -0.27 16 16 C -0.13 -1.71 4.27 -90.61 -0.39 -2.10 16 17 C -0.15 -2.01 8.57 -26.68 -0.23 -2.24 16 18 C -0.19 -2.16 9.88 -26.69 -0.26 -2.42 16 19 C -0.14 -1.43 4.81 -90.61 -0.44 -1.87 16 20 C -0.18 -1.70 10.18 -26.69 -0.27 -1.97 16 21 C -0.18 -1.76 9.68 -26.69 -0.26 -2.02 16 22 C -0.19 -4.01 9.96 -26.69 -0.27 -4.28 16 23 C -0.17 -3.87 8.74 -26.69 -0.23 -4.11 16 24 H 0.28 7.92 6.19 -40.82 -0.25 7.67 16 25 H 0.06 1.55 7.82 -51.93 -0.41 1.15 16 26 H 0.04 0.85 8.11 -51.93 -0.42 0.43 16 27 H 0.40 7.22 8.23 -40.82 -0.34 6.88 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.09 1.12 7.13 -51.93 -0.37 0.75 16 30 H 0.08 1.13 7.47 -51.93 -0.39 0.74 16 31 H 0.09 1.21 8.11 -51.93 -0.42 0.79 16 32 H 0.10 1.46 7.85 -51.93 -0.41 1.06 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.10 1.00 8.11 -51.93 -0.42 0.58 16 37 H 0.09 0.91 8.05 -51.93 -0.42 0.50 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 0.97 7.59 -51.93 -0.39 0.58 16 41 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 44 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 LS Contribution 358.41 15.07 5.40 5.40 Total: -1.00 -28.94 358.41 -10.15 -39.09 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -7.67 Total: 12.02 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: -3.30 Total: -25.20 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.42 Total: -39.04 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.07 Total: -11.24 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -5.08 Total: 18.96 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.94 -10.15 -39.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403972529.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.728 kcal (2) G-P(sol) polarization free energy of solvation -28.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds