Wall clock time and date at job start Mon Mar 30 2020 02:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47001 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47286 * 120.00136 * 3 2 1 6 6 H 1.48507 * 109.46736 * 239.99940 * 3 2 1 7 7 C 1.37879 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00134 * 187.13091 * 7 2 1 9 9 C 1.50696 * 119.99802 * 7.13436 * 7 2 1 10 10 C 1.53002 * 115.55193 * 275.21021 * 9 7 2 11 11 N 1.46505 * 109.47002 * 297.93943 * 10 9 7 12 12 C 1.34775 * 119.99989 * 184.66830 * 11 10 9 13 13 O 1.21276 * 120.00144 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99901 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.47020 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.46922 * 65.00178 * 15 14 12 17 17 C 1.53011 * 117.49590 * 248.74677 * 16 15 14 18 18 C 1.52997 * 117.49948 * 180.08565 * 16 15 14 19 19 C 1.53003 * 109.47169 * 184.99396 * 15 14 12 20 20 C 1.53002 * 117.49622 * 128.74805 * 19 15 14 21 21 C 1.53005 * 117.49533 * 60.09343 * 19 15 14 22 22 C 1.53008 * 117.49853 * 129.54157 * 9 7 2 23 23 C 1.53000 * 117.50221 * 60.88313 * 9 7 2 24 24 H 0.97004 * 120.00131 * 175.40434 * 1 2 3 25 25 H 1.08996 * 109.47248 * 57.93926 * 10 9 7 26 26 H 1.08998 * 109.47484 * 177.94245 * 10 9 7 27 27 H 0.97003 * 120.00045 * 4.67435 * 11 10 9 28 28 H 1.09005 * 109.47025 * 299.99700 * 14 12 11 29 29 H 1.08995 * 109.47362 * 59.99988 * 14 12 11 30 30 H 1.09000 * 109.47406 * 305.00045 * 15 14 12 31 31 H 1.08999 * 115.55544 * 34.41364 * 16 15 14 32 32 H 1.09001 * 117.49796 * 359.97438 * 17 16 15 33 33 H 1.08994 * 117.49566 * 145.02059 * 17 16 15 34 34 H 1.08997 * 117.49912 * 214.97439 * 18 16 15 35 35 H 1.09002 * 117.50160 * 359.97438 * 18 16 15 36 36 H 1.08993 * 115.55154 * 274.42168 * 19 15 14 37 37 H 1.08998 * 117.49771 * 0.02562 * 20 19 15 38 38 H 1.08999 * 117.49929 * 145.02522 * 20 19 15 39 39 H 1.09004 * 117.49486 * 214.98107 * 21 19 15 40 40 H 1.09000 * 117.49888 * 359.97001 * 21 19 15 41 41 H 1.08998 * 117.49575 * 0.02562 * 22 9 7 42 42 H 1.08997 * 117.50012 * 145.01699 * 22 9 7 43 43 H 1.09003 * 117.50343 * 214.97736 * 23 9 7 44 44 H 1.08997 * 117.49643 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6964 1.2124 6 1 3.1030 1.6963 -1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0783 -1.1977 0.1166 9 6 1.2597 -2.4941 -0.1610 10 6 0.6775 -3.0853 1.1246 11 7 1.7650 -3.3915 2.0574 12 6 1.4975 -4.0104 3.2244 13 8 0.3567 -4.3142 3.5021 14 6 2.6160 -4.3248 4.1842 15 6 2.0457 -5.0217 5.4211 16 6 1.4638 -6.3785 5.0192 17 6 -0.0556 -6.5445 5.0902 18 6 0.8393 -7.2343 6.1230 19 6 3.1601 -5.2291 6.4488 20 6 2.8995 -4.7524 7.8792 21 6 3.8713 -3.9832 6.9808 22 6 1.7685 -3.4728 -1.2214 23 6 0.4684 -2.6991 -1.4543 24 1 -0.4850 -0.8374 -0.0673 25 1 -0.0008 -2.3646 1.5812 26 1 0.1322 -3.9993 0.8898 27 1 2.6774 -3.1487 1.8351 28 1 3.3384 -4.9805 3.6979 29 1 3.1087 -3.3998 4.4835 30 1 1.2602 -4.4040 5.8565 31 1 1.9897 -6.8968 4.2174 32 1 -0.6405 -5.6872 5.4237 33 1 -0.5291 -7.1722 4.3354 34 1 0.9540 -8.3155 6.0472 35 1 0.8434 -6.8309 7.1357 36 1 3.7561 -6.1325 6.3201 37 1 1.9342 -4.2915 8.0880 38 1 3.3246 -5.3420 8.6914 39 1 4.9353 -4.0671 7.2023 40 1 3.5456 -3.0159 6.5982 41 1 2.6422 -3.1764 -1.8019 42 1 1.6882 -4.5377 -1.0033 43 1 -0.4668 -3.2553 -1.3895 44 1 0.4862 -1.8934 -2.1882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403972529.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:16 Heat of formation + Delta-G solvation = 0.219082 kcal Electronic energy + Delta-G solvation = -21815.658872 eV Core-core repulsion = 18733.883125 eV Total energy + Delta-G solvation = -3081.775747 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.97494 -39.42376 -38.51770 -36.96098 -34.90938 -33.94222 -32.71778 -28.46317 -26.99835 -25.71172 -23.28037 -23.13015 -23.09446 -22.25541 -21.54776 -21.19721 -20.44601 -18.73689 -17.78358 -16.95330 -16.79444 -16.43628 -15.89049 -15.65790 -15.54613 -15.28210 -14.73801 -14.64056 -14.51599 -14.08467 -13.71908 -13.20091 -13.12201 -12.80642 -12.61295 -12.40574 -12.34500 -12.27839 -12.24746 -11.96829 -11.95924 -11.51482 -11.25499 -11.09404 -10.88562 -10.71813 -10.57811 -10.52358 -10.44707 -10.20340 -9.83714 -8.52624 -6.28376 1.56318 1.62707 1.80837 1.82527 2.36603 2.59921 2.93897 3.04753 3.24265 3.29536 3.61213 3.82220 3.98117 4.04908 4.13410 4.16611 4.24581 4.28328 4.34544 4.38881 4.43937 4.46649 4.56102 4.65573 4.76618 4.81188 4.81621 4.85593 4.88561 4.94361 5.04874 5.08127 5.12882 5.15398 5.32536 5.34350 5.34971 5.36864 5.43316 5.53471 5.65882 6.14162 6.26223 6.68838 6.81840 7.44823 7.55443 8.86939 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019368 B = 0.004398 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.305704 B = 6365.601995 C = 7238.070750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.020 4.020 3 Si 1.109 2.891 4 H -0.293 1.293 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.575 4.575 8 H 0.055 0.945 9 C -0.018 4.018 10 C 0.177 3.823 11 N -0.705 5.705 12 C 0.496 3.504 13 O -0.579 6.579 14 C -0.123 4.123 15 C -0.004 4.004 16 C -0.138 4.138 17 C -0.171 4.171 18 C -0.162 4.162 19 C -0.140 4.140 20 C -0.178 4.178 21 C -0.181 4.181 22 C -0.162 4.162 23 C -0.181 4.181 24 H 0.264 0.736 25 H 0.018 0.982 26 H 0.037 0.963 27 H 0.408 0.592 28 H 0.115 0.885 29 H 0.104 0.896 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.421 -11.847 11.817 19.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.220 4.220 3 Si 0.932 3.068 4 H -0.219 1.219 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.612 4.612 8 H 0.073 0.927 9 C -0.018 4.018 10 C 0.052 3.948 11 N -0.355 5.355 12 C 0.284 3.716 13 O -0.459 6.459 14 C -0.162 4.162 15 C -0.023 4.023 16 C -0.156 4.156 17 C -0.208 4.208 18 C -0.199 4.199 19 C -0.158 4.158 20 C -0.215 4.215 21 C -0.218 4.218 22 C -0.199 4.199 23 C -0.219 4.219 24 H 0.074 0.926 25 H 0.036 0.964 26 H 0.055 0.945 27 H 0.244 0.756 28 H 0.133 0.867 29 H 0.122 0.878 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.137 0.863 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.410 -10.420 12.065 18.024 hybrid contribution -0.210 -1.203 -0.629 1.374 sum 8.200 -11.623 11.436 18.251 Atomic orbital electron populations 1.70844 1.07992 1.31052 1.47016 1.27022 0.96495 1.05811 0.92701 0.83027 0.74135 0.71850 0.77797 1.21946 1.19634 1.19654 1.21463 0.94331 0.90649 1.54797 0.92653 1.19353 1.00129 0.95880 0.86484 1.20521 0.88645 0.95705 0.89880 1.45878 1.11589 1.59210 1.18819 1.21435 0.91199 0.76795 0.82164 1.90649 1.24331 1.54479 1.76443 1.21720 0.96205 1.03528 0.94758 1.19973 0.95449 0.93894 0.92960 1.22114 0.95365 0.96938 1.01162 1.22669 0.93732 1.02123 1.02281 1.23017 1.03219 0.98797 0.94882 1.22186 1.00031 0.99222 0.94331 1.23054 1.00726 1.04092 0.93665 1.23048 0.98879 0.95797 1.04096 1.22887 0.96777 0.96169 1.04092 1.22686 0.94848 1.02373 1.02007 0.92598 0.96367 0.94452 0.75637 0.86686 0.87764 0.93015 0.88353 0.91072 0.90446 0.87815 0.88444 0.86343 0.89964 0.87379 0.87226 0.89619 0.89466 0.89139 0.90425 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.20 13.57 21.45 0.29 -54.90 16 2 C -0.02 -1.09 5.39 84.66 0.46 -0.63 16 3 Si 1.11 48.18 29.91 68.60 2.05 50.23 16 4 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 7 C -0.57 -29.48 8.44 25.60 0.22 -29.27 16 8 H 0.06 2.75 7.82 -2.91 -0.02 2.73 16 9 C -0.02 -0.82 0.99 -52.93 -0.05 -0.87 16 10 C 0.18 8.09 5.43 86.38 0.47 8.56 16 11 N -0.70 -26.85 5.46 -463.06 -2.53 -29.38 16 12 C 0.50 17.63 7.58 87.66 0.66 18.29 16 13 O -0.58 -24.52 13.47 -3.02 -0.04 -24.56 16 14 C -0.12 -3.03 5.07 29.85 0.15 -2.88 16 15 C 0.00 -0.09 1.82 -10.79 -0.02 -0.11 16 16 C -0.14 -3.35 4.27 -10.79 -0.05 -3.39 16 17 C -0.17 -4.78 8.57 30.63 0.26 -4.52 16 18 C -0.16 -3.38 9.88 30.62 0.30 -3.08 16 19 C -0.14 -2.47 4.81 -10.79 -0.05 -2.52 16 20 C -0.18 -2.96 10.18 30.62 0.31 -2.65 16 21 C -0.18 -2.99 9.68 30.62 0.30 -2.70 16 22 C -0.16 -6.42 9.96 30.62 0.30 -6.11 16 23 C -0.18 -8.11 8.74 30.62 0.27 -7.84 16 24 H 0.26 15.78 6.19 -92.71 -0.57 15.20 16 25 H 0.02 0.97 7.82 -2.39 -0.02 0.95 16 26 H 0.04 1.68 8.11 -2.39 -0.02 1.66 16 27 H 0.41 14.18 8.23 -92.71 -0.76 13.41 16 28 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 29 H 0.10 2.35 7.13 -2.39 -0.02 2.33 16 30 H 0.05 1.51 7.47 -2.39 -0.02 1.49 16 31 H 0.10 2.32 8.11 -2.39 -0.02 2.30 16 32 H 0.07 2.31 7.85 -2.39 -0.02 2.30 16 33 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.10 1.89 8.14 -2.39 -0.02 1.88 16 36 H 0.12 1.81 8.11 -2.39 -0.02 1.80 16 37 H 0.08 1.53 8.05 -2.39 -0.02 1.52 16 38 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.11 1.45 8.14 -2.38 -0.02 1.44 16 40 H 0.09 1.59 7.59 -2.39 -0.02 1.57 16 41 H 0.09 3.35 8.14 -2.39 -0.02 3.34 16 42 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 43 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.07 3.19 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -63.84 358.41 3.71 -60.13 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: 0.40 Total: 38.20 kcal Atomic # 6 Polarization: -43.25 SS G_CDS: 3.53 Total: -39.72 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -2.24 Total: -84.28 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.04 Total: -24.56 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.05 Total: 50.23 kcal Total: -63.84 3.71 -60.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403972529.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.347 kcal (2) G-P(sol) polarization free energy of solvation -63.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds