Wall clock time and date at job start Mon Mar 30 2020 02:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99869 * 2 1 4 4 H 1.48507 * 109.47130 * 273.06051 * 3 2 1 5 5 H 1.48502 * 109.47044 * 33.05761 * 3 2 1 6 6 H 1.48492 * 109.47281 * 153.06373 * 3 2 1 7 7 C 1.37870 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00212 * 1.68534 * 7 2 1 9 9 C 1.50701 * 120.00080 * 181.68883 * 7 2 1 10 10 C 1.53000 * 115.55100 * 90.82109 * 9 7 2 11 11 N 1.46496 * 109.47378 * 65.20731 * 10 9 7 12 12 C 1.34781 * 119.99991 * 185.18717 * 11 10 9 13 13 O 1.21278 * 120.00082 * 4.48887 * 12 11 10 14 14 C 1.50701 * 119.99411 * 184.48955 * 12 11 10 15 15 H 1.09000 * 109.47556 * 293.29038 * 14 12 11 16 16 C 1.52996 * 109.47362 * 53.29766 * 14 12 11 17 17 C 1.53002 * 109.47162 * 119.99801 * 16 14 12 18 18 C 1.52997 * 109.46849 * 299.99341 * 17 16 14 19 19 C 1.53001 * 109.47191 * 60.00436 * 18 17 16 20 20 C 1.53005 * 109.46501 * 173.29506 * 14 12 11 21 21 C 1.52997 * 109.47018 * 179.97438 * 20 14 12 22 22 C 1.52993 * 109.47490 * 59.99798 * 17 16 14 23 23 C 1.52999 * 117.50039 * 236.48692 * 9 7 2 24 24 C 1.52994 * 117.50009 * 305.14618 * 9 7 2 25 25 H 0.97002 * 120.00326 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46742 * 305.20696 * 10 9 7 27 27 H 1.08996 * 109.47275 * 185.21264 * 10 9 7 28 28 H 0.97001 * 119.99865 * 5.19115 * 11 10 9 29 29 H 1.08993 * 109.47441 * 359.97438 * 16 14 12 30 30 H 1.09002 * 109.47141 * 239.99068 * 16 14 12 31 31 H 1.09001 * 109.47010 * 180.02562 * 17 16 14 32 32 H 1.08994 * 109.47832 * 300.00424 * 18 17 16 33 33 H 1.09007 * 109.47211 * 180.02562 * 18 17 16 34 34 H 1.08996 * 109.47524 * 239.99702 * 19 18 17 35 35 H 1.08998 * 109.47291 * 119.99342 * 19 18 17 36 36 H 1.08998 * 109.47625 * 59.99906 * 20 14 12 37 37 H 1.09003 * 109.47244 * 179.97438 * 21 20 14 38 38 H 1.09000 * 109.47346 * 299.99719 * 21 20 14 39 39 H 1.08995 * 109.47468 * 60.00019 * 22 17 16 40 40 H 1.09000 * 109.47403 * 180.02562 * 22 17 16 41 41 H 1.08997 * 117.50453 * 215.00344 * 23 9 7 42 42 H 1.09009 * 117.49557 * 0.02562 * 23 9 7 43 43 H 1.09002 * 117.49648 * 359.97438 * 24 9 7 44 44 H 1.09000 * 117.50401 * 144.97125 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4318 2.0838 -1.3981 5 1 1.4803 2.6331 0.7637 6 1 3.5775 1.4224 0.6342 7 6 2.0045 -1.1940 -0.0005 8 1 1.4649 -2.1292 -0.0285 9 6 3.5110 -1.1942 0.0379 10 6 4.1355 -1.2351 1.4341 11 7 3.8068 -2.5087 2.0790 12 6 4.1636 -2.7271 3.3603 13 8 4.6837 -1.8409 4.0044 14 6 3.9162 -4.0726 3.9923 15 1 2.8429 -4.2393 4.0837 16 6 4.5298 -5.1677 3.1176 17 6 5.5806 -5.9347 3.9228 18 6 6.6781 -4.9706 4.3777 19 6 6.0646 -3.8755 5.2525 20 6 4.5580 -4.1095 5.3808 21 6 4.3063 -5.4752 6.0228 22 6 4.9205 -6.5706 5.1478 23 6 4.2463 -1.9264 -1.0864 24 6 4.2454 -0.3964 -1.0413 25 1 -0.4851 0.8400 0.0004 26 1 3.7424 -0.4129 2.0321 27 1 5.2180 -1.1386 1.3509 28 1 3.3325 -3.1948 1.5839 29 1 4.9998 -4.7147 2.2447 30 1 3.7479 -5.8545 2.7935 31 1 6.0181 -6.7145 3.2995 32 1 7.1485 -4.5176 3.5051 33 1 7.4271 -5.5171 4.9510 34 1 6.2435 -2.9024 4.7953 35 1 6.5218 -3.9018 6.2416 36 1 4.1209 -3.3294 6.0040 37 1 4.7639 -5.5017 7.0118 38 1 3.2329 -5.6415 6.1142 39 1 4.1386 -7.2574 4.8237 40 1 5.6692 -7.1166 5.7217 41 1 5.1749 -2.4371 -0.8316 42 1 3.6403 -2.4076 -1.8542 43 1 3.6389 0.1284 -1.7795 44 1 5.1732 0.0999 -0.7567 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404092383.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:26 Heat of formation + Delta-G solvation = -38.696033 kcal Electronic energy + Delta-G solvation = -22651.925791 eV Core-core repulsion = 19568.462558 eV Total energy + Delta-G solvation = -3083.463233 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.91154 -38.40187 -36.95519 -33.56354 -32.13365 -31.41150 -31.08631 -30.75180 -26.68538 -25.26810 -23.23539 -22.51686 -21.92250 -21.77106 -19.77202 -19.18515 -17.21343 -16.48478 -16.44806 -16.31791 -15.70421 -15.14107 -14.96543 -14.59104 -14.07366 -13.56243 -12.87296 -12.82676 -12.60613 -12.52295 -12.19781 -12.12510 -12.05764 -11.97500 -11.94125 -11.87636 -11.44318 -11.16774 -10.89838 -10.71685 -10.48106 -10.19984 -10.10635 -9.84441 -9.80973 -9.63911 -9.17972 -9.09708 -8.64681 -8.54394 -8.25207 -6.16475 -4.21018 3.17144 3.27332 3.38777 3.44150 3.75299 4.39398 4.48794 4.61971 4.66243 4.89391 5.12041 5.15533 5.26829 5.27920 5.32447 5.33222 5.37058 5.41934 5.46769 5.58213 5.67438 5.68030 5.81974 5.96007 6.00619 6.04584 6.06181 6.09304 6.20835 6.22706 6.27672 6.34222 6.36802 6.39434 6.49952 6.51840 6.62186 6.68442 6.98019 7.07508 7.17840 7.66938 8.20852 8.40026 8.82484 8.83338 9.46632 10.94885 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027504 B = 0.004705 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.804350 B = 5949.894487 C = 6087.038409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.079 3.921 3 Si 0.881 3.119 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.257 1.257 7 C -0.490 4.490 8 H 0.078 0.922 9 C -0.014 4.014 10 C 0.158 3.842 11 N -0.703 5.703 12 C 0.513 3.487 13 O -0.554 6.554 14 C -0.103 4.103 15 H 0.096 0.904 16 C -0.109 4.109 17 C -0.085 4.085 18 C -0.114 4.114 19 C -0.122 4.122 20 C -0.063 4.063 21 C -0.114 4.114 22 C -0.112 4.112 23 C -0.180 4.180 24 C -0.193 4.193 25 H 0.265 0.735 26 H 0.064 0.936 27 H 0.040 0.960 28 H 0.403 0.597 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.549 -11.991 7.750 17.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.124 4.124 3 Si 0.709 3.291 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.181 1.181 7 C -0.527 4.527 8 H 0.096 0.904 9 C -0.016 4.016 10 C 0.034 3.966 11 N -0.352 5.352 12 C 0.299 3.701 13 O -0.433 6.433 14 C -0.124 4.124 15 H 0.114 0.886 16 C -0.146 4.146 17 C -0.103 4.103 18 C -0.151 4.151 19 C -0.159 4.159 20 C -0.082 4.082 21 C -0.152 4.152 22 C -0.150 4.150 23 C -0.217 4.217 24 C -0.231 4.231 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.058 0.942 28 H 0.237 0.763 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.755 -11.229 8.186 17.572 hybrid contribution 0.012 0.712 -0.386 0.810 sum 10.767 -10.517 7.800 16.952 Atomic orbital electron populations 1.69883 1.06383 1.27248 1.49680 1.24980 0.94610 0.99163 0.93637 0.86829 0.80807 0.83292 0.78167 1.20602 1.22190 1.18073 1.20171 0.86099 0.94510 1.51902 0.90404 1.19645 0.95126 1.00560 0.86231 1.21070 0.96405 0.85293 0.93798 1.45860 1.58004 1.18949 1.12367 1.20522 0.78326 0.89431 0.81839 1.90595 1.44580 1.45856 1.62266 1.21316 1.01837 0.92965 0.96272 0.88628 1.21612 0.98491 0.96747 0.97797 1.21015 0.95745 0.97202 0.96353 1.21556 0.97135 0.96804 0.99629 1.21694 0.94436 1.00234 0.99577 1.20747 0.96217 0.96895 0.94314 1.21576 1.00571 0.94483 0.98525 1.21552 0.99680 0.97449 0.96326 1.22882 1.01173 0.93719 1.03977 1.22925 1.01539 0.94168 1.04476 0.92492 0.91744 0.94177 0.76300 0.91116 0.91114 0.91240 0.92350 0.92464 0.89566 0.92677 0.90574 0.91975 0.92005 0.92060 0.92257 0.90939 0.89407 0.89257 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 13.96 55.43 0.77 -25.80 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.56 24.74 -169.99 -4.21 17.35 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.26 -6.03 6.01 56.52 0.34 -5.69 16 7 C -0.49 -12.86 9.34 -34.44 -0.32 -13.19 16 8 H 0.08 2.20 8.06 -52.48 -0.42 1.78 16 9 C -0.01 -0.32 0.83 -155.66 -0.13 -0.44 16 10 C 0.16 3.31 5.26 -4.04 -0.02 3.29 16 11 N -0.70 -12.90 4.97 -60.30 -0.30 -13.20 16 12 C 0.51 9.06 6.62 -10.98 -0.07 8.99 16 13 O -0.55 -11.51 13.92 5.56 0.08 -11.43 16 14 C -0.10 -1.39 2.59 -91.77 -0.24 -1.63 16 15 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 16 C -0.11 -1.24 5.07 -26.73 -0.14 -1.38 16 17 C -0.08 -0.87 3.19 -90.62 -0.29 -1.16 16 18 C -0.11 -1.27 5.71 -26.73 -0.15 -1.42 16 19 C -0.12 -1.58 5.39 -26.73 -0.14 -1.72 16 20 C -0.06 -0.80 2.34 -90.62 -0.21 -1.01 16 21 C -0.11 -1.15 5.71 -26.70 -0.15 -1.31 16 22 C -0.11 -1.04 5.71 -26.71 -0.15 -1.19 16 23 C -0.18 -3.41 9.96 -26.70 -0.27 -3.68 16 24 C -0.19 -3.97 7.19 -26.70 -0.19 -4.16 16 25 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.06 1.52 7.55 -51.93 -0.39 1.13 16 27 H 0.04 0.80 8.09 -51.93 -0.42 0.38 16 28 H 0.40 6.87 8.17 -40.82 -0.33 6.53 16 29 H 0.07 0.87 7.22 -51.93 -0.37 0.49 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 34 H 0.09 1.37 5.76 -51.93 -0.30 1.07 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 1.08 8.03 -51.93 -0.42 0.66 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.09 1.93 6.66 -51.93 -0.35 1.58 16 44 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 331.88 15.07 5.00 5.00 Total: -1.00 -29.74 331.88 -8.93 -38.67 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -7.70 Total: 7.30 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -2.58 Total: -17.90 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.47 Total: -39.00 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.08 Total: -11.43 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.21 Total: 17.35 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.74 -8.93 -38.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404092383.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.024 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds