Wall clock time and date at job start Mon Mar 30 2020 02:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99869 * 2 1 4 4 H 1.48507 * 109.47130 * 273.06051 * 3 2 1 5 5 H 1.48502 * 109.47044 * 33.05761 * 3 2 1 6 6 H 1.48492 * 109.47281 * 153.06373 * 3 2 1 7 7 C 1.37870 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00212 * 1.68534 * 7 2 1 9 9 C 1.50701 * 120.00080 * 181.68883 * 7 2 1 10 10 C 1.53000 * 115.55100 * 90.82109 * 9 7 2 11 11 N 1.46496 * 109.47378 * 65.20731 * 10 9 7 12 12 C 1.34781 * 119.99991 * 185.18717 * 11 10 9 13 13 O 1.21278 * 120.00082 * 4.48887 * 12 11 10 14 14 C 1.50701 * 119.99411 * 184.48955 * 12 11 10 15 15 H 1.09000 * 109.47556 * 293.29038 * 14 12 11 16 16 C 1.52996 * 109.47362 * 53.29766 * 14 12 11 17 17 C 1.53002 * 109.47162 * 119.99801 * 16 14 12 18 18 C 1.52997 * 109.46849 * 299.99341 * 17 16 14 19 19 C 1.53001 * 109.47191 * 60.00436 * 18 17 16 20 20 C 1.53005 * 109.46501 * 173.29506 * 14 12 11 21 21 C 1.52997 * 109.47018 * 179.97438 * 20 14 12 22 22 C 1.52993 * 109.47490 * 59.99798 * 17 16 14 23 23 C 1.52999 * 117.50039 * 236.48692 * 9 7 2 24 24 C 1.52994 * 117.50009 * 305.14618 * 9 7 2 25 25 H 0.97002 * 120.00326 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46742 * 305.20696 * 10 9 7 27 27 H 1.08996 * 109.47275 * 185.21264 * 10 9 7 28 28 H 0.97001 * 119.99865 * 5.19115 * 11 10 9 29 29 H 1.08993 * 109.47441 * 359.97438 * 16 14 12 30 30 H 1.09002 * 109.47141 * 239.99068 * 16 14 12 31 31 H 1.09001 * 109.47010 * 180.02562 * 17 16 14 32 32 H 1.08994 * 109.47832 * 300.00424 * 18 17 16 33 33 H 1.09007 * 109.47211 * 180.02562 * 18 17 16 34 34 H 1.08996 * 109.47524 * 239.99702 * 19 18 17 35 35 H 1.08998 * 109.47291 * 119.99342 * 19 18 17 36 36 H 1.08998 * 109.47625 * 59.99906 * 20 14 12 37 37 H 1.09003 * 109.47244 * 179.97438 * 21 20 14 38 38 H 1.09000 * 109.47346 * 299.99719 * 21 20 14 39 39 H 1.08995 * 109.47468 * 60.00019 * 22 17 16 40 40 H 1.09000 * 109.47403 * 180.02562 * 22 17 16 41 41 H 1.08997 * 117.50453 * 215.00344 * 23 9 7 42 42 H 1.09009 * 117.49557 * 0.02562 * 23 9 7 43 43 H 1.09002 * 117.49648 * 359.97438 * 24 9 7 44 44 H 1.09000 * 117.50401 * 144.97125 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4318 2.0838 -1.3981 5 1 1.4803 2.6331 0.7637 6 1 3.5775 1.4224 0.6342 7 6 2.0045 -1.1940 -0.0005 8 1 1.4649 -2.1292 -0.0285 9 6 3.5110 -1.1942 0.0379 10 6 4.1355 -1.2351 1.4341 11 7 3.8068 -2.5087 2.0790 12 6 4.1636 -2.7271 3.3603 13 8 4.6837 -1.8409 4.0044 14 6 3.9162 -4.0726 3.9923 15 1 2.8429 -4.2393 4.0837 16 6 4.5298 -5.1677 3.1176 17 6 5.5806 -5.9347 3.9228 18 6 6.6781 -4.9706 4.3777 19 6 6.0646 -3.8755 5.2525 20 6 4.5580 -4.1095 5.3808 21 6 4.3063 -5.4752 6.0228 22 6 4.9205 -6.5706 5.1478 23 6 4.2463 -1.9264 -1.0864 24 6 4.2454 -0.3964 -1.0413 25 1 -0.4851 0.8400 0.0004 26 1 3.7424 -0.4129 2.0321 27 1 5.2180 -1.1386 1.3509 28 1 3.3325 -3.1948 1.5839 29 1 4.9998 -4.7147 2.2447 30 1 3.7479 -5.8545 2.7935 31 1 6.0181 -6.7145 3.2995 32 1 7.1485 -4.5176 3.5051 33 1 7.4271 -5.5171 4.9510 34 1 6.2435 -2.9024 4.7953 35 1 6.5218 -3.9018 6.2416 36 1 4.1209 -3.3294 6.0040 37 1 4.7639 -5.5017 7.0118 38 1 3.2329 -5.6415 6.1142 39 1 4.1386 -7.2574 4.8237 40 1 5.6692 -7.1166 5.7217 41 1 5.1749 -2.4371 -0.8316 42 1 3.6403 -2.4076 -1.8542 43 1 3.6389 0.1284 -1.7795 44 1 5.1732 0.0999 -0.7567 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404092383.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:25 Heat of formation + Delta-G solvation = -56.304683 kcal Electronic energy + Delta-G solvation = -22652.689359 eV Core-core repulsion = 19568.462558 eV Total energy + Delta-G solvation = -3084.226801 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.99829 -39.78365 -38.57012 -35.09929 -34.22415 -32.40747 -32.06873 -31.61812 -28.39057 -27.13724 -24.34835 -23.41076 -23.36942 -22.81503 -21.26296 -20.87037 -18.71798 -17.99239 -17.51696 -17.36643 -17.00572 -16.71371 -16.39869 -15.95365 -15.58417 -14.95146 -14.77336 -14.38781 -14.00127 -13.78458 -13.58253 -13.12695 -13.01378 -12.90767 -12.89686 -12.83768 -12.82804 -12.80425 -12.51799 -12.18604 -11.99333 -11.62607 -11.56045 -11.14456 -11.00063 -10.74121 -10.68734 -10.63765 -10.55803 -10.17921 -9.82434 -8.31618 -6.37523 1.30710 1.37912 1.48380 1.76256 2.33349 2.35159 3.03915 3.23350 3.55384 3.71665 3.75788 4.01449 4.13009 4.28293 4.34665 4.37628 4.40117 4.40293 4.44905 4.47077 4.52268 4.54847 4.60131 4.65610 4.78109 4.83291 4.84432 4.95374 5.08097 5.17009 5.19516 5.22521 5.29918 5.35728 5.40829 5.47623 5.48761 5.52984 5.55272 5.60630 5.67262 5.69522 6.26651 6.69671 6.76959 7.32690 7.39389 8.83061 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027504 B = 0.004705 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.804350 B = 5949.894487 C = 6087.038409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.267 1.267 5 H -0.306 1.306 6 H -0.242 1.242 7 C -0.477 4.477 8 H 0.046 0.954 9 C -0.040 4.040 10 C 0.168 3.832 11 N -0.703 5.703 12 C 0.508 3.492 13 O -0.588 6.588 14 C -0.098 4.098 15 H 0.103 0.897 16 C -0.106 4.106 17 C -0.082 4.082 18 C -0.111 4.111 19 C -0.121 4.121 20 C -0.065 4.065 21 C -0.109 4.109 22 C -0.109 4.109 23 C -0.150 4.150 24 C -0.195 4.195 25 H 0.264 0.736 26 H 0.030 0.970 27 H 0.054 0.946 28 H 0.409 0.591 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.625 -14.037 7.738 20.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.174 4.174 3 Si 0.757 3.243 4 H -0.193 1.193 5 H -0.233 1.233 6 H -0.165 1.165 7 C -0.515 4.515 8 H 0.064 0.936 9 C -0.041 4.041 10 C 0.043 3.957 11 N -0.352 5.352 12 C 0.296 3.704 13 O -0.470 6.470 14 C -0.119 4.119 15 H 0.121 0.879 16 C -0.144 4.144 17 C -0.101 4.101 18 C -0.149 4.149 19 C -0.159 4.159 20 C -0.084 4.084 21 C -0.147 4.147 22 C -0.146 4.146 23 C -0.187 4.187 24 C -0.232 4.232 25 H 0.073 0.927 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.245 0.755 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.123 0.877 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.852 -13.304 8.161 20.218 hybrid contribution -0.641 1.314 -0.363 1.506 sum 12.210 -11.990 7.798 18.806 Atomic orbital electron populations 1.70012 1.08041 1.27838 1.52521 1.25726 0.95144 1.02488 0.94033 0.86010 0.80125 0.79459 0.78658 1.19253 1.23343 1.16488 1.20363 0.88630 0.92910 1.49564 0.93576 1.19473 0.92778 1.04213 0.87642 1.20781 0.96805 0.85439 0.92641 1.45859 1.58238 1.18260 1.12849 1.21326 0.77142 0.90683 0.81265 1.90583 1.45999 1.47439 1.62940 1.21376 1.02579 0.91065 0.96861 0.87936 1.21645 0.99380 0.96250 0.97152 1.21045 0.94947 0.97116 0.96951 1.21549 0.97846 0.96484 0.99021 1.21632 0.94903 0.99190 1.00162 1.20759 0.95855 0.98120 0.93619 1.21557 1.01294 0.92877 0.98966 1.21558 1.00344 0.97079 0.95653 1.22908 1.01474 0.92982 1.01325 1.23000 1.01835 0.95445 1.02961 0.92713 0.95163 0.92754 0.75542 0.92018 0.89185 0.89307 0.93467 0.90652 0.93175 0.91836 0.92972 0.91066 0.91394 0.90722 0.90779 0.87745 0.89470 0.90406 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.87 13.96 21.44 0.30 -57.57 16 2 C 0.02 1.36 5.47 84.65 0.46 1.82 16 3 Si 0.93 44.77 24.74 68.60 1.70 46.47 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.31 -15.12 7.11 99.48 0.71 -14.41 16 6 H -0.24 -10.91 6.01 99.48 0.60 -10.31 16 7 C -0.48 -25.40 9.34 25.60 0.24 -25.16 16 8 H 0.05 2.68 8.06 -2.91 -0.02 2.66 16 9 C -0.04 -1.70 0.83 -52.93 -0.04 -1.75 16 10 C 0.17 6.94 5.26 86.38 0.45 7.39 16 11 N -0.70 -25.62 4.97 -463.06 -2.30 -27.92 16 12 C 0.51 18.04 6.62 87.66 0.58 18.62 16 13 O -0.59 -25.13 13.92 -3.02 -0.04 -25.17 16 14 C -0.10 -2.55 2.59 -11.54 -0.03 -2.58 16 15 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 16 C -0.11 -2.18 5.07 30.59 0.16 -2.02 16 17 C -0.08 -1.41 3.19 -10.80 -0.03 -1.44 16 18 C -0.11 -2.25 5.71 30.59 0.17 -2.07 16 19 C -0.12 -3.06 5.39 30.60 0.16 -2.89 16 20 C -0.06 -1.60 2.34 -10.79 -0.03 -1.62 16 21 C -0.11 -1.93 5.71 30.61 0.17 -1.76 16 22 C -0.11 -1.59 5.71 30.61 0.17 -1.41 16 23 C -0.15 -5.25 9.96 30.62 0.30 -4.94 16 24 C -0.19 -7.50 7.19 30.61 0.22 -7.28 16 25 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 26 H 0.03 1.44 7.55 -2.38 -0.02 1.42 16 27 H 0.05 2.09 8.09 -2.39 -0.02 2.07 16 28 H 0.41 13.72 8.17 -92.71 -0.76 12.97 16 29 H 0.06 1.39 7.22 -2.39 -0.02 1.37 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.25 8.14 -2.38 -0.02 1.24 16 34 H 0.05 1.63 5.76 -2.39 -0.01 1.62 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.05 1.51 8.03 -2.39 -0.02 1.49 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 42 H 0.09 3.09 8.14 -2.38 -0.02 3.07 16 43 H 0.08 3.19 6.66 -2.39 -0.02 3.18 16 44 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -66.47 331.88 2.73 -63.74 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.10 Total: 27.56 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 2.97 Total: -27.09 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -2.00 Total: -85.50 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.04 Total: -25.17 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.70 Total: 46.47 kcal Total: -66.47 2.73 -63.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404092383.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.431 kcal (2) G-P(sol) polarization free energy of solvation -66.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds