Wall clock time and date at job start Mon Mar 30 2020 01:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36883 * 126.40059 * 2 1 4 4 C 1.34664 * 106.82020 * 180.23847 * 3 2 1 5 5 N 1.34128 * 108.02006 * 359.60841 * 4 3 2 6 6 C 1.30495 * 109.25415 * 0.40110 * 5 4 3 7 7 C 1.50708 * 125.64773 * 179.77768 * 6 5 4 8 8 C 1.52999 * 109.46784 * 269.97447 * 7 6 5 9 9 H 1.08997 * 109.50147 * 55.00231 * 8 7 6 10 10 C 1.53043 * 109.49536 * 175.06523 * 8 7 6 11 11 C 1.53040 * 109.53914 * 181.28344 * 10 8 7 12 12 C 1.53197 * 109.33539 * 298.68161 * 11 10 8 13 13 N 1.46928 * 108.77645 * 54.62090 * 12 11 10 14 14 C 1.34776 * 120.62878 * 126.40297 * 13 12 11 15 15 O 1.21691 * 119.99693 * 174.61906 * 14 13 12 16 16 C 1.46375 * 120.00212 * 354.63438 * 14 13 12 17 17 H 1.07998 * 120.00184 * 5.98821 * 16 14 13 18 18 C 1.40051 * 120.00146 * 185.99544 * 16 14 13 19 19 N 1.30676 * 119.99751 * 5.50522 * 18 16 14 20 20 Si 1.86795 * 120.00293 * 185.50570 * 18 16 14 21 21 H 1.48499 * 109.47204 * 84.99363 * 20 18 16 22 22 H 1.48501 * 109.47313 * 204.99882 * 20 18 16 23 23 H 1.48506 * 109.46898 * 324.99653 * 20 18 16 24 24 C 1.46922 * 118.74027 * 306.38970 * 13 12 11 25 25 H 1.09003 * 109.46931 * 89.97864 * 1 2 3 26 26 H 1.09000 * 109.47292 * 209.97671 * 1 2 3 27 27 H 1.09004 * 109.47295 * 329.98509 * 1 2 3 28 28 H 1.08005 * 126.58765 * 359.96655 * 3 2 1 29 29 H 1.07999 * 125.98760 * 179.76053 * 4 3 2 30 30 H 1.08998 * 109.47106 * 29.97568 * 7 6 5 31 31 H 1.08997 * 109.46960 * 149.97345 * 7 6 5 32 32 H 1.09000 * 109.45993 * 301.33909 * 10 8 7 33 33 H 1.09007 * 109.45593 * 61.29423 * 10 8 7 34 34 H 1.08999 * 109.49541 * 178.71566 * 11 10 8 35 35 H 1.08999 * 109.49426 * 58.65154 * 11 10 8 36 36 H 1.08991 * 109.58730 * 294.83126 * 12 11 10 37 37 H 1.09000 * 109.58293 * 174.40518 * 12 11 10 38 38 H 0.97001 * 119.99748 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.58594 * 293.82107 * 24 13 12 40 40 H 1.08998 * 109.58857 * 173.39559 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5460 0.6505 -0.0054 5 7 3.5095 -0.6903 0.0002 6 6 2.2663 -1.0870 0.0001 7 6 1.8018 -2.5207 0.0007 8 6 1.6443 -3.0062 -1.4416 9 1 2.5787 -2.8526 -1.9814 10 6 1.2922 -4.4956 -1.4436 11 6 1.1658 -4.9898 -2.8865 12 6 0.0388 -4.2249 -3.5877 13 7 0.2970 -2.7838 -3.4639 14 6 0.3259 -1.9950 -4.5564 15 8 0.4429 -0.7900 -4.4338 16 6 0.2162 -2.5878 -5.8902 17 1 0.0153 -3.6436 -5.9971 18 6 0.3718 -1.7860 -7.0279 19 7 0.7207 -0.5331 -6.9013 20 14 0.0804 -2.5074 -8.7261 21 1 -1.3670 -2.4399 -9.0509 22 1 0.8503 -1.7323 -9.7320 23 1 0.5265 -3.9237 -8.7453 24 6 0.5227 -2.2189 -2.1266 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3634 -0.8902 0.5135 27 1 -0.3634 0.8899 0.5141 28 1 1.9613 2.1345 -0.0005 29 1 4.4368 1.2611 -0.0105 30 1 2.5366 -3.1404 0.5146 31 1 0.8433 -2.5918 0.5148 32 1 2.0773 -5.0550 -0.9350 33 1 0.3454 -4.6455 -0.9246 34 1 0.9375 -6.0556 -2.8872 35 1 2.1045 -4.8184 -3.4132 36 1 -0.9145 -4.4670 -3.1180 37 1 0.0101 -4.5017 -4.6416 38 1 0.8281 0.0224 -7.6892 39 1 -0.3911 -2.2974 -1.5377 40 1 0.8133 -1.1721 -2.2163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408225385.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:13 Heat of formation + Delta-G solvation = 17.776264 kcal Electronic energy + Delta-G solvation = -22311.086870 eV Core-core repulsion = 19126.532116 eV Total energy + Delta-G solvation = -3184.554754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.87376 -38.70355 -36.09094 -33.86241 -33.27933 -32.57917 -31.11121 -29.34233 -27.27077 -26.58189 -25.52295 -24.15202 -22.00189 -21.12119 -20.32954 -19.34143 -18.80417 -16.86852 -16.55806 -15.83354 -15.41971 -14.91708 -14.41066 -14.11281 -14.04174 -13.79824 -13.73678 -13.23198 -12.97628 -12.74686 -12.61693 -12.33796 -12.17840 -12.04861 -11.59368 -11.52058 -11.06609 -10.99332 -10.67665 -10.61893 -10.36593 -10.23743 -9.95073 -9.79838 -9.71797 -9.33313 -8.85583 -8.09429 -7.58893 -7.22074 -6.22622 -4.65068 2.29593 3.02273 3.13115 3.19616 3.22106 3.41118 4.07375 4.50101 4.57321 4.59639 4.81316 4.93737 5.11416 5.19151 5.23285 5.32561 5.42642 5.55261 5.62947 5.72712 5.73508 5.77327 5.85833 5.92552 6.03769 6.06710 6.16828 6.24668 6.43008 6.50491 6.53784 6.58895 6.60177 6.84956 7.01116 7.41237 7.44857 7.62415 8.13020 8.34618 8.37263 9.01118 9.42773 10.56262 10.74593 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019430 B = 0.005616 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.718860 B = 4984.902371 C = 5848.194420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.452 5.452 3 C -0.059 4.059 4 C -0.031 4.031 5 N -0.494 5.494 6 C 0.215 3.785 7 C -0.026 4.026 8 C -0.099 4.099 9 H 0.079 0.921 10 C -0.107 4.107 11 C -0.135 4.135 12 C 0.120 3.880 13 N -0.641 5.641 14 C 0.561 3.439 15 O -0.580 6.580 16 C -0.546 4.546 17 H 0.073 0.927 18 C 0.089 3.911 19 N -0.768 5.768 20 Si 0.906 3.094 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.265 1.265 24 C 0.126 3.874 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.171 0.829 29 H 0.166 0.834 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.040 0.960 37 H 0.093 0.907 38 H 0.269 0.731 39 H 0.035 0.965 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.435 -3.993 12.903 13.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.135 5.135 3 C -0.192 4.192 4 C -0.179 4.179 5 N -0.213 5.213 6 C -0.048 4.048 7 C -0.066 4.066 8 C -0.120 4.120 9 H 0.098 0.902 10 C -0.144 4.144 11 C -0.174 4.174 12 C -0.004 4.004 13 N -0.379 5.379 14 C 0.367 3.633 15 O -0.463 6.463 16 C -0.582 4.582 17 H 0.091 0.909 18 C -0.131 4.131 19 N -0.397 5.397 20 Si 0.730 3.270 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.189 1.189 24 C 0.002 3.998 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.188 0.812 29 H 0.183 0.817 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.111 0.889 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.809 -3.620 12.867 13.391 hybrid contribution -0.833 0.318 -0.885 1.256 sum -1.642 -3.302 11.982 12.536 Atomic orbital electron populations 1.22196 0.76882 1.03929 1.04685 1.45209 1.07500 1.06633 1.54123 1.22629 0.91409 0.92513 1.12670 1.22198 0.96277 0.91266 1.08165 1.70189 1.18602 1.11977 1.20511 1.23174 0.85771 0.90880 1.04929 1.20057 1.01243 0.87019 0.98237 1.21605 1.01014 0.95528 0.93823 0.90226 1.21493 1.00880 0.94801 0.97253 1.21943 1.00773 0.98896 0.95765 1.21441 0.95132 0.82091 1.01765 1.48160 1.77119 1.07190 1.05455 1.18245 0.76100 0.85583 0.83411 1.90580 1.55066 1.14770 1.85879 1.20963 1.52352 0.95754 0.89140 0.90875 1.25722 0.92598 0.94360 1.00445 1.70001 1.33138 1.06149 1.30388 0.86418 0.78938 0.79787 0.81812 1.19627 1.20512 1.18911 1.21292 0.94714 0.98739 0.85086 0.89354 0.89671 0.89920 0.81192 0.81656 0.88909 0.90716 0.92285 0.92323 0.91903 0.91588 0.94213 0.88902 0.92071 0.94652 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 9.49 59.84 0.57 1.34 16 2 N -0.45 -6.81 2.82 -121.28 -0.34 -7.15 16 3 C -0.06 -0.88 11.58 -16.56 -0.19 -1.07 16 4 C -0.03 -0.50 11.87 -17.81 -0.21 -0.71 16 5 N -0.49 -9.04 11.25 -10.82 -0.12 -9.16 16 6 C 0.21 3.53 6.40 -155.42 -1.00 2.54 16 7 C -0.03 -0.36 5.00 -27.88 -0.14 -0.50 16 8 C -0.10 -1.61 2.33 -90.50 -0.21 -1.82 16 9 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 10 C -0.11 -1.45 5.17 -26.69 -0.14 -1.58 16 11 C -0.14 -2.05 6.08 -26.61 -0.16 -2.21 16 12 C 0.12 2.21 6.35 -3.71 -0.02 2.18 16 13 N -0.64 -14.56 2.97 -174.43 -0.52 -15.08 16 14 C 0.56 16.02 7.60 -12.99 -0.10 15.92 16 15 O -0.58 -18.84 14.52 5.20 0.08 -18.76 16 16 C -0.55 -15.29 8.87 -35.63 -0.32 -15.61 16 17 H 0.07 1.86 5.65 -52.49 -0.30 1.56 16 18 C 0.09 2.47 5.49 -17.36 -0.10 2.38 16 19 N -0.77 -23.13 11.88 55.55 0.66 -22.47 16 20 Si 0.91 20.09 29.56 -169.99 -5.03 15.07 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 24 C 0.13 2.44 4.10 -3.71 -0.02 2.42 16 25 H 0.09 1.24 6.75 -51.93 -0.35 0.89 16 26 H 0.08 0.81 7.04 -51.93 -0.37 0.44 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.17 1.95 8.06 -52.48 -0.42 1.53 16 29 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 0.83 7.07 -51.93 -0.37 0.46 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 1.81 5.30 -51.93 -0.28 1.54 16 38 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 39 H 0.04 0.60 7.85 -51.93 -0.41 0.19 16 40 H 0.08 1.84 4.97 -51.93 -0.26 1.59 16 LS Contribution 318.83 15.07 4.80 4.80 Total: -1.00 -36.66 318.83 -8.18 -44.84 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.68 Total: 4.64 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -2.03 Total: 3.28 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.32 Total: -53.87 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: 0.08 Total: -18.76 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -36.66 -8.18 -44.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408225385.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.618 kcal (2) G-P(sol) polarization free energy of solvation -36.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds