Wall clock time and date at job start Mon Mar 30 2020 01:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36883 * 126.40059 * 2 1 4 4 C 1.34664 * 106.82020 * 180.23847 * 3 2 1 5 5 N 1.34128 * 108.02006 * 359.60841 * 4 3 2 6 6 C 1.30495 * 109.25415 * 0.40110 * 5 4 3 7 7 C 1.50708 * 125.64773 * 179.77768 * 6 5 4 8 8 C 1.52999 * 109.46784 * 269.97447 * 7 6 5 9 9 H 1.08997 * 109.50147 * 55.00231 * 8 7 6 10 10 C 1.53043 * 109.49536 * 175.06523 * 8 7 6 11 11 C 1.53040 * 109.53914 * 181.28344 * 10 8 7 12 12 C 1.53197 * 109.33539 * 298.68161 * 11 10 8 13 13 N 1.46928 * 108.77645 * 54.62090 * 12 11 10 14 14 C 1.34776 * 120.62878 * 126.40297 * 13 12 11 15 15 O 1.21691 * 119.99693 * 174.61906 * 14 13 12 16 16 C 1.46375 * 120.00212 * 354.63438 * 14 13 12 17 17 H 1.07998 * 120.00184 * 5.98821 * 16 14 13 18 18 C 1.40051 * 120.00146 * 185.99544 * 16 14 13 19 19 N 1.30676 * 119.99751 * 5.50522 * 18 16 14 20 20 Si 1.86795 * 120.00293 * 185.50570 * 18 16 14 21 21 H 1.48499 * 109.47204 * 84.99363 * 20 18 16 22 22 H 1.48501 * 109.47313 * 204.99882 * 20 18 16 23 23 H 1.48506 * 109.46898 * 324.99653 * 20 18 16 24 24 C 1.46922 * 118.74027 * 306.38970 * 13 12 11 25 25 H 1.09003 * 109.46931 * 89.97864 * 1 2 3 26 26 H 1.09000 * 109.47292 * 209.97671 * 1 2 3 27 27 H 1.09004 * 109.47295 * 329.98509 * 1 2 3 28 28 H 1.08005 * 126.58765 * 359.96655 * 3 2 1 29 29 H 1.07999 * 125.98760 * 179.76053 * 4 3 2 30 30 H 1.08998 * 109.47106 * 29.97568 * 7 6 5 31 31 H 1.08997 * 109.46960 * 149.97345 * 7 6 5 32 32 H 1.09000 * 109.45993 * 301.33909 * 10 8 7 33 33 H 1.09007 * 109.45593 * 61.29423 * 10 8 7 34 34 H 1.08999 * 109.49541 * 178.71566 * 11 10 8 35 35 H 1.08999 * 109.49426 * 58.65154 * 11 10 8 36 36 H 1.08991 * 109.58730 * 294.83126 * 12 11 10 37 37 H 1.09000 * 109.58293 * 174.40518 * 12 11 10 38 38 H 0.97001 * 119.99748 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.58594 * 293.82107 * 24 13 12 40 40 H 1.08998 * 109.58857 * 173.39559 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5460 0.6505 -0.0054 5 7 3.5095 -0.6903 0.0002 6 6 2.2663 -1.0870 0.0001 7 6 1.8018 -2.5207 0.0007 8 6 1.6443 -3.0062 -1.4416 9 1 2.5787 -2.8526 -1.9814 10 6 1.2922 -4.4956 -1.4436 11 6 1.1658 -4.9898 -2.8865 12 6 0.0388 -4.2249 -3.5877 13 7 0.2970 -2.7838 -3.4639 14 6 0.3259 -1.9950 -4.5564 15 8 0.4429 -0.7900 -4.4338 16 6 0.2162 -2.5878 -5.8902 17 1 0.0153 -3.6436 -5.9971 18 6 0.3718 -1.7860 -7.0279 19 7 0.7207 -0.5331 -6.9013 20 14 0.0804 -2.5074 -8.7261 21 1 -1.3670 -2.4399 -9.0509 22 1 0.8503 -1.7323 -9.7320 23 1 0.5265 -3.9237 -8.7453 24 6 0.5227 -2.2189 -2.1266 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3634 -0.8902 0.5135 27 1 -0.3634 0.8899 0.5141 28 1 1.9613 2.1345 -0.0005 29 1 4.4368 1.2611 -0.0105 30 1 2.5366 -3.1404 0.5146 31 1 0.8433 -2.5918 0.5148 32 1 2.0773 -5.0550 -0.9350 33 1 0.3454 -4.6455 -0.9246 34 1 0.9375 -6.0556 -2.8872 35 1 2.1045 -4.8184 -3.4132 36 1 -0.9145 -4.4670 -3.1180 37 1 0.0101 -4.5017 -4.6416 38 1 0.8281 0.0224 -7.6892 39 1 -0.3911 -2.2974 -1.5377 40 1 0.8133 -1.1721 -2.2163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408225385.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:12 Heat of formation + Delta-G solvation = -7.263076 kcal Electronic energy + Delta-G solvation = -22312.172657 eV Core-core repulsion = 19126.532116 eV Total energy + Delta-G solvation = -3185.640541 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.04826 -40.34465 -37.94403 -35.07607 -34.74379 -34.64874 -32.62273 -30.68192 -28.84394 -27.99840 -26.83735 -25.79406 -23.36299 -22.30564 -21.97467 -20.68831 -20.27020 -18.45433 -17.93852 -17.82178 -16.76113 -16.33843 -16.13266 -15.57527 -15.38608 -15.22837 -15.02050 -14.59865 -14.31000 -14.18865 -13.86298 -13.64441 -13.38802 -13.35777 -13.27928 -13.21188 -12.77827 -12.64198 -12.39441 -12.04679 -11.90812 -11.65270 -11.39883 -11.30378 -10.97163 -10.94030 -10.53068 -9.78232 -9.29064 -9.04217 -8.32368 -6.84292 1.11727 1.37270 1.39520 1.53563 1.96531 2.16639 2.22100 2.44402 2.87575 3.46166 3.56956 3.83552 3.91316 3.94922 4.01759 4.09115 4.26827 4.31578 4.39363 4.43685 4.50857 4.59147 4.64368 4.74135 4.77194 4.88686 4.93698 4.97377 5.06631 5.14833 5.24622 5.28498 5.37908 5.41747 5.56603 5.79687 5.84924 6.15190 6.28939 6.43115 6.86676 7.16264 7.43354 8.46314 8.65919 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019430 B = 0.005616 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.718860 B = 4984.902371 C = 5848.194420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.457 5.457 3 C -0.062 4.062 4 C -0.060 4.060 5 N -0.535 5.535 6 C 0.197 3.803 7 C -0.019 4.019 8 C -0.088 4.088 9 H 0.032 0.968 10 C -0.100 4.100 11 C -0.130 4.130 12 C 0.112 3.888 13 N -0.646 5.646 14 C 0.541 3.459 15 O -0.636 6.636 16 C -0.571 4.571 17 H 0.095 0.905 18 C 0.028 3.972 19 N -0.826 5.826 20 Si 0.995 3.005 21 H -0.259 1.259 22 H -0.276 1.276 23 H -0.246 1.246 24 C 0.128 3.872 25 H 0.058 0.942 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.200 0.800 29 H 0.181 0.819 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.038 0.962 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.273 0.727 39 H 0.067 0.933 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.923 -6.655 13.904 15.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.139 5.139 3 C -0.195 4.195 4 C -0.208 4.208 5 N -0.255 5.255 6 C -0.065 4.065 7 C -0.058 4.058 8 C -0.109 4.109 9 H 0.051 0.949 10 C -0.137 4.137 11 C -0.168 4.168 12 C -0.010 4.010 13 N -0.382 5.382 14 C 0.346 3.654 15 O -0.524 6.524 16 C -0.608 4.608 17 H 0.113 0.887 18 C -0.187 4.187 19 N -0.455 5.455 20 Si 0.814 3.186 21 H -0.184 1.184 22 H -0.201 1.201 23 H -0.170 1.170 24 C 0.004 3.996 25 H 0.077 0.923 26 H 0.131 0.869 27 H 0.130 0.870 28 H 0.217 0.783 29 H 0.198 0.802 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.312 -6.345 13.919 15.471 hybrid contribution -0.375 1.173 -1.136 1.676 sum -2.687 -5.172 12.783 14.049 Atomic orbital electron populations 1.22388 0.75046 1.06878 1.03574 1.45464 1.08730 1.06341 1.53321 1.23173 0.91173 0.93881 1.11281 1.22645 0.97793 0.91145 1.09181 1.70129 1.20234 1.13179 1.21936 1.23716 0.85721 0.92357 1.04756 1.20143 1.03521 0.85529 0.96591 1.21447 0.97334 0.97540 0.94551 0.94925 1.21510 1.03393 0.92249 0.96551 1.21909 0.97992 1.00707 0.96174 1.21704 0.97911 0.79658 1.01772 1.48058 1.75883 1.08809 1.05479 1.18659 0.75876 0.85427 0.85392 1.90525 1.57497 1.17201 1.87156 1.21519 1.52498 0.97036 0.89703 0.88748 1.27012 0.91400 0.94491 1.05753 1.70189 1.34827 1.08376 1.32147 0.85078 0.79267 0.79462 0.74800 1.18388 1.20086 1.16957 1.21418 0.97145 0.96929 0.84083 0.92286 0.86894 0.87010 0.78323 0.80153 0.87307 0.87128 0.89611 0.89236 0.87952 0.94332 0.91282 0.90603 0.91745 0.91533 0.94183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.39 9.49 127.77 1.21 2.60 16 2 N -0.46 -13.60 2.82 -537.61 -1.52 -15.12 16 3 C -0.06 -1.83 11.58 83.08 0.96 -0.87 16 4 C -0.06 -2.01 11.87 83.52 0.99 -1.02 16 5 N -0.54 -20.10 11.25 -188.13 -2.12 -22.21 16 6 C 0.20 6.45 6.40 138.13 0.88 7.33 16 7 C -0.02 -0.47 5.00 29.85 0.15 -0.32 16 8 C -0.09 -2.76 2.33 -10.71 -0.02 -2.79 16 9 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 10 C -0.10 -2.32 5.17 30.62 0.16 -2.16 16 11 C -0.13 -3.57 6.08 30.67 0.19 -3.39 16 12 C 0.11 3.93 6.35 86.36 0.55 4.48 16 13 N -0.65 -29.68 2.97 -823.99 -2.45 -32.13 16 14 C 0.54 32.18 7.60 86.36 0.66 32.84 16 15 O -0.64 -43.84 14.52 -4.32 -0.06 -43.91 16 16 C -0.57 -32.79 8.87 24.83 0.22 -32.57 16 17 H 0.09 4.82 5.65 -2.91 -0.02 4.80 16 18 C 0.03 1.60 5.49 85.30 0.47 2.07 16 19 N -0.83 -51.90 11.88 21.84 0.26 -51.64 16 20 Si 0.99 41.53 29.56 68.60 2.03 43.56 16 21 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 22 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 24 C 0.13 4.94 4.10 86.36 0.35 5.29 16 25 H 0.06 1.69 6.75 -2.39 -0.02 1.67 16 26 H 0.11 1.81 7.04 -2.39 -0.02 1.79 16 27 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.20 4.43 8.06 -2.91 -0.02 4.41 16 29 H 0.18 5.04 8.06 -2.91 -0.02 5.01 16 30 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.11 1.98 7.07 -2.39 -0.02 1.96 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.08 2.89 5.30 -2.39 -0.01 2.88 16 38 H 0.27 15.59 8.29 -92.71 -0.77 14.82 16 39 H 0.07 2.13 7.85 -2.39 -0.02 2.11 16 40 H 0.04 1.89 4.97 -2.39 -0.01 1.88 16 Total: -1.00 -87.39 318.83 3.95 -83.44 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 1.04 Total: 26.52 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 6.77 Total: 11.49 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -5.82 Total: -121.10 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -0.06 Total: -43.91 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -87.39 3.95 -83.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408225385.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.177 kcal (2) G-P(sol) polarization free energy of solvation -87.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds