Wall clock time and date at job start Mon Mar 30 2020 01:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36888 * 126.39816 * 2 1 4 4 C 1.34668 * 106.81693 * 180.25068 * 3 2 1 5 5 N 1.34127 * 108.01988 * 359.73956 * 4 3 2 6 6 C 1.30497 * 109.25744 * 0.02562 * 5 4 3 7 7 C 1.50706 * 125.65062 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.46998 * 90.02026 * 7 6 5 9 9 H 1.08998 * 109.50086 * 304.99853 * 8 7 6 10 10 C 1.53039 * 109.49578 * 184.93620 * 8 7 6 11 11 C 1.53040 * 109.54054 * 178.65076 * 10 8 7 12 12 C 1.53191 * 109.31136 * 61.36215 * 11 10 8 13 13 N 1.46924 * 108.77940 * 305.36571 * 12 11 10 14 14 C 1.34770 * 120.63776 * 233.60916 * 13 12 11 15 15 O 1.21687 * 120.00748 * 174.81639 * 14 13 12 16 16 C 1.46382 * 119.99661 * 354.81802 * 14 13 12 17 17 H 1.08000 * 119.99926 * 342.42827 * 16 14 13 18 18 C 1.40046 * 119.99742 * 162.43159 * 16 14 13 19 19 N 1.30681 * 119.99730 * 170.22738 * 18 16 14 20 20 Si 1.86798 * 120.00335 * 350.22438 * 18 16 14 21 21 H 1.48503 * 109.46929 * 84.76786 * 20 18 16 22 22 H 1.48505 * 109.47128 * 204.76754 * 20 18 16 23 23 H 1.48500 * 109.46962 * 324.77131 * 20 18 16 24 24 C 1.47005 * 118.74911 * 53.60822 * 13 12 11 25 25 H 1.08996 * 109.47440 * 270.19409 * 1 2 3 26 26 H 1.09004 * 109.46794 * 30.19429 * 1 2 3 27 27 H 1.08998 * 109.46795 * 150.19085 * 1 2 3 28 28 H 1.07997 * 126.59081 * 359.96347 * 3 2 1 29 29 H 1.08001 * 125.99090 * 179.75636 * 4 3 2 30 30 H 1.08997 * 109.46919 * 330.01848 * 7 6 5 31 31 H 1.08997 * 109.46797 * 210.02147 * 7 6 5 32 32 H 1.09001 * 109.46381 * 298.66748 * 10 8 7 33 33 H 1.09001 * 109.46167 * 58.63065 * 10 8 7 34 34 H 1.08999 * 109.50275 * 181.31633 * 11 10 8 35 35 H 1.09007 * 109.49629 * 301.38484 * 11 10 8 36 36 H 1.09002 * 109.58554 * 65.15694 * 12 11 10 37 37 H 1.09006 * 109.58942 * 185.43620 * 12 11 10 38 38 H 0.96995 * 119.99604 * 179.97438 * 19 18 16 39 39 H 1.09005 * 109.62279 * 186.61839 * 24 13 12 40 40 H 1.08994 * 109.58376 * 66.17304 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6505 -0.0056 5 7 3.5095 -0.6903 -0.0032 6 6 2.2663 -1.0869 0.0032 7 6 1.8018 -2.5206 0.0083 8 6 1.6505 -3.0025 1.4525 9 1 2.5873 -2.8476 1.9878 10 6 1.2985 -4.4918 1.4598 11 6 1.1800 -4.9828 2.9044 12 6 0.0560 -4.2168 3.6092 13 7 0.3128 -2.7759 3.4808 14 6 0.3468 -1.9844 4.5711 15 8 0.6532 -0.8117 4.4625 16 6 0.0153 -2.5355 5.8860 17 1 -0.5209 -3.4700 5.9603 18 6 0.3933 -1.8507 7.0477 19 7 -0.0625 -2.2354 8.2105 20 14 1.5491 -0.3876 6.9353 21 1 0.7677 0.8383 6.6321 22 1 2.2575 -0.2157 8.2291 23 1 2.5409 -0.6222 5.8552 24 6 0.5321 -2.2135 2.1404 25 1 -0.3634 0.0035 1.0276 26 1 -0.3633 0.8883 -0.5169 27 1 -0.3633 -0.8917 -0.5109 28 1 1.9613 2.1345 -0.0006 29 1 4.4369 1.2611 -0.0109 30 1 2.5343 -3.1417 -0.5072 31 1 0.8411 -2.5930 -0.5014 32 1 0.3492 -4.6431 0.9459 33 1 2.0812 -5.0525 0.9488 34 1 0.9522 -6.0487 2.9090 35 1 2.1214 -4.8096 3.4259 36 1 -0.8994 -4.4605 3.1447 37 1 0.0308 -4.4930 4.6634 38 1 0.1996 -1.7614 9.0151 39 1 0.8227 -1.1664 2.2257 40 1 -0.3845 -2.2939 1.5560 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408225389.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:14 Heat of formation + Delta-G solvation = 7.694475 kcal Electronic energy + Delta-G solvation = -22418.079689 eV Core-core repulsion = 19233.087756 eV Total energy + Delta-G solvation = -3184.991933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.98244 -38.98714 -36.56180 -33.98754 -33.48829 -32.83923 -31.41263 -29.47823 -27.44741 -26.80559 -25.68191 -24.32521 -22.15333 -21.22784 -20.41414 -19.42181 -18.93074 -16.97728 -16.69330 -16.12224 -15.55450 -15.10135 -14.70474 -14.28168 -14.01176 -13.99249 -13.81304 -13.30555 -13.16112 -12.83712 -12.72785 -12.37908 -12.29383 -12.23440 -12.08513 -11.88170 -11.45964 -10.89363 -10.72495 -10.64060 -10.45765 -10.25665 -10.09336 -9.81934 -9.46642 -9.43496 -9.01871 -8.20366 -7.94626 -7.54730 -6.63306 -4.83498 2.18667 2.90829 3.30913 3.44858 3.47150 3.70346 4.13438 4.23768 4.47948 4.53686 4.70457 4.82570 5.00447 5.07010 5.12255 5.20474 5.31213 5.41762 5.47324 5.52556 5.61954 5.63680 5.73445 5.79725 5.93961 5.96266 6.03594 6.14882 6.25939 6.36179 6.42894 6.46816 6.53008 6.72122 6.90625 7.08152 7.30364 7.63573 7.86584 8.26948 8.30833 8.71041 9.13396 10.02929 10.37901 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017105 B = 0.006612 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.538183 B = 4233.595066 C = 5231.114281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.454 5.454 3 C -0.060 4.060 4 C -0.030 4.030 5 N -0.493 5.493 6 C 0.214 3.786 7 C -0.026 4.026 8 C -0.099 4.099 9 H 0.081 0.919 10 C -0.108 4.108 11 C -0.135 4.135 12 C 0.120 3.880 13 N -0.631 5.631 14 C 0.555 3.445 15 O -0.617 6.617 16 C -0.534 4.534 17 H 0.091 0.909 18 C 0.104 3.896 19 N -0.829 5.829 20 Si 0.961 3.039 21 H -0.277 1.277 22 H -0.319 1.319 23 H -0.267 1.267 24 C 0.123 3.877 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.171 0.829 29 H 0.167 0.833 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.098 0.902 38 H 0.282 0.718 39 H 0.083 0.917 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.147 -1.181 -16.484 16.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.136 5.136 3 C -0.193 4.193 4 C -0.178 4.178 5 N -0.212 5.212 6 C -0.048 4.048 7 C -0.066 4.066 8 C -0.120 4.120 9 H 0.099 0.901 10 C -0.146 4.146 11 C -0.174 4.174 12 C -0.004 4.004 13 N -0.365 5.365 14 C 0.365 3.635 15 O -0.509 6.509 16 C -0.569 4.569 17 H 0.109 0.891 18 C -0.114 4.114 19 N -0.458 5.458 20 Si 0.793 3.207 21 H -0.204 1.204 22 H -0.250 1.250 23 H -0.193 1.193 24 C -0.001 4.001 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.188 0.812 29 H 0.184 0.816 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.754 -1.116 -16.348 16.403 hybrid contribution -0.323 1.236 0.089 1.281 sum 0.430 0.121 -16.259 16.265 Atomic orbital electron populations 1.22193 0.76877 1.04115 1.04528 1.45229 1.07500 1.06650 1.54241 1.22637 0.91414 0.92509 1.12691 1.22215 0.96295 0.91263 1.08076 1.70197 1.18583 1.11988 1.20407 1.23188 0.85782 0.90888 1.04958 1.20058 1.01405 0.87026 0.98079 1.21594 1.00851 0.95621 0.93921 0.90102 1.21513 1.01110 0.94627 0.97308 1.21940 1.00618 0.99187 0.95609 1.21495 0.95532 0.80967 1.02433 1.47716 1.75894 1.07570 1.05288 1.18369 0.76161 0.84624 0.84394 1.90221 1.57590 1.18264 1.84830 1.20744 1.38451 1.10024 0.87702 0.89141 1.25708 0.94209 0.97334 0.94120 1.69562 1.37858 1.39117 0.99296 0.85328 0.80353 0.80965 0.74014 1.20356 1.24999 1.19274 1.21423 0.95316 0.98857 0.84554 0.89553 0.89820 0.89558 0.81159 0.81618 0.88738 0.90592 0.92143 0.92056 0.91468 0.91519 0.93671 0.88362 0.90825 0.89871 0.94002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 9.52 59.85 0.57 1.26 16 2 N -0.45 -6.35 2.83 -121.28 -0.34 -6.69 16 3 C -0.06 -0.82 11.58 -16.56 -0.19 -1.01 16 4 C -0.03 -0.46 11.87 -17.81 -0.21 -0.68 16 5 N -0.49 -8.60 11.25 -10.82 -0.12 -8.72 16 6 C 0.21 3.31 6.40 -155.42 -0.99 2.32 16 7 C -0.03 -0.33 5.00 -27.88 -0.14 -0.47 16 8 C -0.10 -1.51 2.32 -90.50 -0.21 -1.72 16 9 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 10 C -0.11 -1.37 5.17 -26.69 -0.14 -1.51 16 11 C -0.14 -1.96 6.08 -26.61 -0.16 -2.12 16 12 C 0.12 2.12 6.27 -3.71 -0.02 2.10 16 13 N -0.63 -13.56 2.97 -174.37 -0.52 -14.08 16 14 C 0.56 14.89 7.21 -12.99 -0.09 14.80 16 15 O -0.62 -18.15 12.12 5.20 0.06 -18.08 16 16 C -0.53 -15.03 9.08 -35.63 -0.32 -15.35 16 17 H 0.09 2.52 6.42 -52.49 -0.34 2.18 16 18 C 0.10 2.99 5.52 -17.36 -0.10 2.90 16 19 N -0.83 -23.60 13.92 55.55 0.77 -22.83 16 20 Si 0.96 25.94 25.83 -169.99 -4.39 21.55 16 21 H -0.28 -7.70 7.11 56.52 0.40 -7.29 16 22 H -0.32 -8.12 7.11 56.52 0.40 -7.72 16 23 H -0.27 -7.66 6.82 56.52 0.39 -7.28 16 24 C 0.12 2.20 4.13 -3.67 -0.02 2.19 16 25 H 0.09 1.08 6.78 -51.93 -0.35 0.73 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.09 0.73 7.04 -51.93 -0.37 0.36 16 28 H 0.17 1.79 8.06 -52.49 -0.42 1.36 16 29 H 0.17 2.08 8.06 -52.49 -0.42 1.66 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.08 0.77 7.06 -51.93 -0.37 0.40 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 1.93 5.61 -51.93 -0.29 1.64 16 38 H 0.28 7.41 8.29 -40.82 -0.34 7.07 16 39 H 0.08 1.74 4.95 -51.93 -0.26 1.48 16 40 H 0.04 0.65 7.86 -51.93 -0.41 0.24 16 LS Contribution 315.37 15.07 4.75 4.75 Total: -1.00 -35.18 315.37 -7.57 -42.75 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -5.76 Total: -1.35 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -2.03 Total: 2.70 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.21 Total: -52.32 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.06 Total: -18.08 kcal Atomic # 14 Polarization: 25.94 SS G_CDS: -4.39 Total: 21.55 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.18 -7.57 -42.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408225389.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.447 kcal (2) G-P(sol) polarization free energy of solvation -35.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds