Wall clock time and date at job start Mon Mar 30 2020 01:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36888 * 126.39816 * 2 1 4 4 C 1.34668 * 106.81693 * 180.25068 * 3 2 1 5 5 N 1.34127 * 108.01988 * 359.73956 * 4 3 2 6 6 C 1.30497 * 109.25744 * 0.02562 * 5 4 3 7 7 C 1.50706 * 125.65062 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.46998 * 90.02026 * 7 6 5 9 9 H 1.08998 * 109.50086 * 304.99853 * 8 7 6 10 10 C 1.53039 * 109.49578 * 184.93620 * 8 7 6 11 11 C 1.53040 * 109.54054 * 178.65076 * 10 8 7 12 12 C 1.53191 * 109.31136 * 61.36215 * 11 10 8 13 13 N 1.46924 * 108.77940 * 305.36571 * 12 11 10 14 14 C 1.34770 * 120.63776 * 233.60916 * 13 12 11 15 15 O 1.21687 * 120.00748 * 174.81639 * 14 13 12 16 16 C 1.46382 * 119.99661 * 354.81802 * 14 13 12 17 17 H 1.08000 * 119.99926 * 342.42827 * 16 14 13 18 18 C 1.40046 * 119.99742 * 162.43159 * 16 14 13 19 19 N 1.30681 * 119.99730 * 170.22738 * 18 16 14 20 20 Si 1.86798 * 120.00335 * 350.22438 * 18 16 14 21 21 H 1.48503 * 109.46929 * 84.76786 * 20 18 16 22 22 H 1.48505 * 109.47128 * 204.76754 * 20 18 16 23 23 H 1.48500 * 109.46962 * 324.77131 * 20 18 16 24 24 C 1.47005 * 118.74911 * 53.60822 * 13 12 11 25 25 H 1.08996 * 109.47440 * 270.19409 * 1 2 3 26 26 H 1.09004 * 109.46794 * 30.19429 * 1 2 3 27 27 H 1.08998 * 109.46795 * 150.19085 * 1 2 3 28 28 H 1.07997 * 126.59081 * 359.96347 * 3 2 1 29 29 H 1.08001 * 125.99090 * 179.75636 * 4 3 2 30 30 H 1.08997 * 109.46919 * 330.01848 * 7 6 5 31 31 H 1.08997 * 109.46797 * 210.02147 * 7 6 5 32 32 H 1.09001 * 109.46381 * 298.66748 * 10 8 7 33 33 H 1.09001 * 109.46167 * 58.63065 * 10 8 7 34 34 H 1.08999 * 109.50275 * 181.31633 * 11 10 8 35 35 H 1.09007 * 109.49629 * 301.38484 * 11 10 8 36 36 H 1.09002 * 109.58554 * 65.15694 * 12 11 10 37 37 H 1.09006 * 109.58942 * 185.43620 * 12 11 10 38 38 H 0.96995 * 119.99604 * 179.97438 * 19 18 16 39 39 H 1.09005 * 109.62279 * 186.61839 * 24 13 12 40 40 H 1.08994 * 109.58376 * 66.17304 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6505 -0.0056 5 7 3.5095 -0.6903 -0.0032 6 6 2.2663 -1.0869 0.0032 7 6 1.8018 -2.5206 0.0083 8 6 1.6505 -3.0025 1.4525 9 1 2.5873 -2.8476 1.9878 10 6 1.2985 -4.4918 1.4598 11 6 1.1800 -4.9828 2.9044 12 6 0.0560 -4.2168 3.6092 13 7 0.3128 -2.7759 3.4808 14 6 0.3468 -1.9844 4.5711 15 8 0.6532 -0.8117 4.4625 16 6 0.0153 -2.5355 5.8860 17 1 -0.5209 -3.4700 5.9603 18 6 0.3933 -1.8507 7.0477 19 7 -0.0625 -2.2354 8.2105 20 14 1.5491 -0.3876 6.9353 21 1 0.7677 0.8383 6.6321 22 1 2.2575 -0.2157 8.2291 23 1 2.5409 -0.6222 5.8552 24 6 0.5321 -2.2135 2.1404 25 1 -0.3634 0.0035 1.0276 26 1 -0.3633 0.8883 -0.5169 27 1 -0.3633 -0.8917 -0.5109 28 1 1.9613 2.1345 -0.0006 29 1 4.4369 1.2611 -0.0109 30 1 2.5343 -3.1417 -0.5072 31 1 0.8411 -2.5930 -0.5014 32 1 0.3492 -4.6431 0.9459 33 1 2.0812 -5.0525 0.9488 34 1 0.9522 -6.0487 2.9090 35 1 2.1214 -4.8096 3.4259 36 1 -0.8994 -4.4605 3.1447 37 1 0.0308 -4.4930 4.6634 38 1 0.1996 -1.7614 9.0151 39 1 0.8227 -1.1664 2.2257 40 1 -0.3845 -2.2939 1.5560 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408225389.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:14 Heat of formation + Delta-G solvation = -15.982521 kcal Electronic energy + Delta-G solvation = -22419.106400 eV Core-core repulsion = 19233.087756 eV Total energy + Delta-G solvation = -3186.018645 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.05624 -40.62122 -38.29975 -35.17008 -35.00484 -34.76951 -32.79562 -30.73985 -29.07939 -28.04248 -26.87948 -25.89910 -23.43948 -22.31164 -21.97370 -20.72022 -20.32411 -18.66262 -18.05759 -17.93711 -17.01729 -16.55025 -16.23560 -15.71018 -15.36181 -15.31719 -15.04106 -14.76421 -14.40078 -14.36209 -14.06894 -13.87783 -13.65923 -13.55949 -13.39388 -13.24380 -13.20727 -12.69328 -12.48903 -11.99957 -11.92453 -11.66330 -11.36572 -11.35150 -11.23244 -10.96894 -10.53376 -10.05904 -9.32884 -9.24690 -8.84024 -7.02194 1.11225 1.24588 1.27634 1.50230 1.95651 2.03068 2.16369 2.27112 2.66802 3.25918 3.44967 3.80282 3.89805 3.93402 3.96942 4.07040 4.22825 4.32033 4.36552 4.41486 4.48041 4.58493 4.62062 4.72516 4.75429 4.84332 4.91264 4.92799 5.01114 5.07112 5.21075 5.24914 5.31118 5.38220 5.53482 5.66902 5.84243 5.99816 6.22325 6.29007 6.59804 7.12617 7.16194 7.96084 8.22251 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017105 B = 0.006612 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.538183 B = 4233.595066 C = 5231.114281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.457 5.457 3 C -0.060 4.060 4 C -0.061 4.061 5 N -0.536 5.536 6 C 0.197 3.803 7 C -0.019 4.019 8 C -0.090 4.090 9 H 0.035 0.965 10 C -0.100 4.100 11 C -0.130 4.130 12 C 0.112 3.888 13 N -0.632 5.632 14 C 0.549 3.451 15 O -0.651 6.651 16 C -0.550 4.550 17 H 0.088 0.912 18 C 0.075 3.925 19 N -0.846 5.846 20 Si 1.003 2.997 21 H -0.291 1.291 22 H -0.293 1.293 23 H -0.299 1.299 24 C 0.122 3.878 25 H 0.063 0.937 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.200 0.800 29 H 0.180 0.820 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.292 0.708 39 H 0.049 0.951 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.995 -2.373 -18.741 18.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.139 5.139 3 C -0.194 4.194 4 C -0.209 4.209 5 N -0.256 5.256 6 C -0.066 4.066 7 C -0.058 4.058 8 C -0.111 4.111 9 H 0.054 0.946 10 C -0.138 4.138 11 C -0.168 4.168 12 C -0.010 4.010 13 N -0.364 5.364 14 C 0.356 3.644 15 O -0.545 6.545 16 C -0.586 4.586 17 H 0.106 0.894 18 C -0.141 4.141 19 N -0.477 5.477 20 Si 0.836 3.164 21 H -0.218 1.218 22 H -0.222 1.222 23 H -0.227 1.227 24 C -0.001 4.001 25 H 0.082 0.918 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.217 0.783 29 H 0.197 0.803 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.121 0.879 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.403 -2.347 -18.607 18.759 hybrid contribution 0.006 1.602 0.741 1.765 sum -0.397 -0.745 -17.866 17.886 Atomic orbital electron populations 1.22426 0.74888 1.06961 1.03828 1.45486 1.08793 1.06260 1.53369 1.23169 0.91116 0.93892 1.11179 1.22639 0.97826 0.91135 1.09254 1.70135 1.20333 1.13210 1.21876 1.23709 0.85704 0.92359 1.04804 1.20136 1.03680 0.85519 0.96431 1.21459 0.97452 0.97433 0.94718 0.94587 1.21524 1.03647 0.92326 0.96266 1.21913 0.97829 1.00784 0.96280 1.21735 0.98457 0.78958 1.01887 1.47722 1.74285 1.08862 1.05503 1.18334 0.75927 0.84514 0.85602 1.90188 1.58809 1.19814 1.85709 1.20969 1.38856 1.10084 0.88716 0.89435 1.26097 0.95036 0.98477 0.94449 1.69552 1.38591 1.39934 0.99664 0.84770 0.78635 0.79178 0.73839 1.21848 1.22234 1.22699 1.21634 0.97932 0.97337 0.83181 0.91808 0.87083 0.86856 0.78263 0.80315 0.87370 0.86904 0.88951 0.89540 0.87930 0.94226 0.90583 0.90994 0.89802 0.93239 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.12 9.52 127.77 1.22 2.33 16 2 N -0.46 -12.13 2.83 -537.61 -1.52 -13.65 16 3 C -0.06 -1.61 11.58 83.09 0.96 -0.65 16 4 C -0.06 -1.89 11.87 83.52 0.99 -0.90 16 5 N -0.54 -18.83 11.25 -188.13 -2.12 -20.94 16 6 C 0.20 5.88 6.40 138.13 0.88 6.76 16 7 C -0.02 -0.42 5.00 29.85 0.15 -0.27 16 8 C -0.09 -2.55 2.32 -10.72 -0.02 -2.58 16 9 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 10 C -0.10 -2.12 5.17 30.62 0.16 -1.96 16 11 C -0.13 -3.41 6.08 30.67 0.19 -3.23 16 12 C 0.11 3.78 6.27 86.36 0.54 4.33 16 13 N -0.63 -26.83 2.97 -823.80 -2.45 -29.28 16 14 C 0.55 30.02 7.21 86.36 0.62 30.64 16 15 O -0.65 -39.35 12.12 -4.31 -0.05 -39.40 16 16 C -0.55 -31.60 9.08 24.83 0.23 -31.37 16 17 H 0.09 4.97 6.42 -2.91 -0.02 4.95 16 18 C 0.08 4.39 5.52 85.30 0.47 4.86 16 19 N -0.85 -48.43 13.92 21.84 0.30 -48.12 16 20 Si 1.00 54.63 25.83 68.60 1.77 56.40 16 21 H -0.29 -16.37 7.11 99.48 0.71 -15.66 16 22 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 23 H -0.30 -17.77 6.82 99.48 0.68 -17.09 16 24 C 0.12 4.20 4.13 86.35 0.36 4.56 16 25 H 0.06 1.51 6.78 -2.39 -0.02 1.49 16 26 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.11 1.43 7.04 -2.39 -0.02 1.41 16 28 H 0.20 3.86 8.06 -2.91 -0.02 3.84 16 29 H 0.18 4.62 8.06 -2.91 -0.02 4.60 16 30 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.11 1.69 7.06 -2.39 -0.02 1.67 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.07 2.81 5.61 -2.38 -0.01 2.80 16 38 H 0.29 15.26 8.29 -92.71 -0.77 14.49 16 39 H 0.05 2.07 4.95 -2.38 -0.01 2.06 16 40 H 0.08 2.13 7.86 -2.39 -0.02 2.12 16 Total: -1.00 -80.15 315.37 3.69 -76.46 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 1.01 Total: 6.03 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 6.74 Total: 12.51 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -5.78 Total: -112.00 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -0.05 Total: -39.40 kcal Atomic # 14 Polarization: 54.63 SS G_CDS: 1.77 Total: 56.40 kcal Total: -80.15 3.69 -76.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408225389.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.479 kcal (2) G-P(sol) polarization free energy of solvation -80.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds