Wall clock time and date at job start Mon Mar 30 2020 01:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 110.99641 * 2 1 4 4 C 1.53003 * 109.46757 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46876 * 180.02562 * 4 3 2 6 6 N 1.46503 * 109.47298 * 179.97438 * 5 4 3 7 7 C 1.34771 * 120.00229 * 179.97438 * 6 5 4 8 8 O 1.21588 * 120.00283 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00064 * 180.02562 * 7 6 5 10 10 C 1.39954 * 120.00332 * 174.28599 * 9 7 6 11 11 C 1.39287 * 119.94740 * 145.41890 * 10 9 7 12 12 C 1.38488 * 120.42965 * 179.97438 * 11 10 9 13 13 C 1.37684 * 120.31943 * 0.29646 * 12 11 10 14 14 C 1.40741 * 119.88448 * 359.43409 * 13 12 11 15 15 C 1.41402 * 120.21165 * 180.31428 * 14 13 12 16 16 H 1.08005 * 120.00193 * 214.42933 * 15 14 13 17 17 C 1.39936 * 120.00261 * 34.42542 * 15 14 13 18 18 N 1.30829 * 119.99792 * 5.54066 * 17 15 14 19 19 Si 1.86796 * 120.00084 * 185.53871 * 17 15 14 20 20 H 1.48498 * 109.47298 * 90.00248 * 19 17 15 21 21 H 1.48508 * 109.46888 * 210.00025 * 19 17 15 22 22 H 1.48496 * 109.47281 * 329.99848 * 19 17 15 23 23 C 1.38231 * 119.94527 * 325.39964 * 10 9 7 24 24 H 1.08998 * 109.47279 * 299.99846 * 1 2 3 25 25 H 1.08999 * 109.47195 * 60.00185 * 1 2 3 26 26 H 1.09000 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.00899 * 110.99968 * 123.95870 * 2 1 3 28 28 H 1.09004 * 109.47042 * 60.00349 * 3 2 1 29 29 H 1.08999 * 109.47583 * 300.00262 * 3 2 1 30 30 H 1.08995 * 109.47215 * 60.00109 * 4 3 2 31 31 H 1.09000 * 109.46973 * 299.99681 * 4 3 2 32 32 H 1.09004 * 109.47165 * 60.00146 * 5 4 3 33 33 H 1.08999 * 109.47342 * 300.00131 * 5 4 3 34 34 H 0.97007 * 119.99378 * 0.02562 * 6 5 4 35 35 H 0.97005 * 119.99652 * 354.28660 * 9 7 6 36 36 H 1.08000 * 119.78500 * 359.97438 * 11 10 9 37 37 H 1.08005 * 119.84069 * 180.02562 * 12 11 10 38 38 H 1.08002 * 120.05909 * 179.70650 * 13 12 11 39 39 H 0.97001 * 120.00167 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.16362 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5248 1.3306 -0.0006 5 6 4.0731 2.7590 0.0000 6 7 5.5376 2.7200 0.0000 7 6 6.2423 3.8688 0.0000 8 8 5.6627 4.9376 0.0005 9 7 7.5896 3.8329 -0.0005 10 6 8.3213 5.0198 -0.1212 11 6 9.5339 5.1604 0.5495 12 6 10.2664 6.3303 0.4367 13 6 9.8002 7.3705 -0.3356 14 6 8.5793 7.2407 -1.0236 15 6 8.0973 8.3020 -1.8240 16 1 7.0354 8.4864 -1.8942 17 6 8.9961 9.1137 -2.5252 18 7 10.2723 8.8258 -2.5279 19 14 8.3737 10.6081 -3.4571 20 1 8.3890 11.7921 -2.5610 21 1 9.2513 10.8621 -4.6280 22 1 6.9862 10.3582 -3.9235 23 6 7.8395 6.0506 -0.9061 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8306 -0.5262 0.7813 28 1 1.6459 1.8947 0.8900 29 1 1.6458 1.8948 -0.8899 30 1 3.8740 0.8074 -0.8908 31 1 3.8747 0.8072 0.8891 32 1 3.7239 3.2818 0.8905 33 1 3.7232 3.2829 -0.8895 34 1 6.0000 1.8673 -0.0008 35 1 8.0522 2.9843 0.0827 36 1 9.9054 4.3517 1.1615 37 1 11.2057 6.4289 0.9606 38 1 10.3725 8.2828 -0.4168 39 1 10.8954 9.3882 -3.0142 40 1 6.8997 5.9424 -1.4271 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415800451.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:42 Heat of formation + Delta-G solvation = -14.028978 kcal Electronic energy + Delta-G solvation = -20364.489405 eV Core-core repulsion = 17178.555473 eV Total energy + Delta-G solvation = -3185.933933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.89398 -37.58574 -36.93665 -34.90058 -34.25106 -32.95536 -31.36935 -29.73588 -28.08868 -26.28495 -25.20028 -23.62226 -21.92204 -21.49657 -20.79820 -19.93848 -17.94731 -17.52799 -16.58003 -15.96597 -15.59618 -15.13185 -14.87121 -14.67516 -14.55392 -14.20620 -13.94184 -13.79111 -13.05213 -12.83913 -12.54338 -12.26987 -12.11163 -11.80232 -11.64433 -11.59140 -11.23303 -11.09867 -11.04960 -10.88219 -10.39773 -10.16389 -9.62346 -9.40023 -9.18477 -8.92761 -8.90659 -8.84879 -7.31131 -6.82656 -6.55184 -4.29165 2.77054 2.90940 3.06630 3.15431 3.19838 3.26343 3.76166 3.85268 4.05720 4.54287 4.66454 4.78104 4.82195 4.93467 5.00980 5.11828 5.28042 5.43017 5.50447 5.55017 5.73006 5.91322 5.93145 6.26898 6.41708 6.51572 6.62492 6.82619 6.84549 6.92989 7.08745 7.15669 7.31502 7.40491 7.75731 7.86185 8.02616 8.19278 8.31327 8.48535 8.74457 8.97118 9.05190 9.09569 10.38574 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022973 B = 0.003125 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.549966 B = 8956.545683 C =10025.931653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.697 5.697 3 C 0.059 3.941 4 C -0.129 4.129 5 C 0.141 3.859 6 N -0.752 5.752 7 C 0.697 3.303 8 O -0.567 6.567 9 N -0.682 5.682 10 C 0.164 3.836 11 C -0.253 4.253 12 C -0.097 4.097 13 C -0.159 4.159 14 C 0.120 3.880 15 C -0.464 4.464 16 H 0.076 0.924 17 C 0.072 3.928 18 N -0.812 5.812 19 Si 0.912 3.088 20 H -0.270 1.270 21 H -0.279 1.279 22 H -0.263 1.263 23 C -0.200 4.200 24 H 0.022 0.978 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.341 0.659 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.393 0.607 35 H 0.394 0.606 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.118 0.882 39 H 0.277 0.723 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.704 -15.148 4.463 19.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.327 5.327 3 C -0.070 4.070 4 C -0.167 4.167 5 C 0.016 3.984 6 N -0.409 5.409 7 C 0.398 3.602 8 O -0.442 6.442 9 N -0.328 5.328 10 C 0.071 3.929 11 C -0.274 4.274 12 C -0.116 4.116 13 C -0.179 4.179 14 C 0.117 3.883 15 C -0.495 4.495 16 H 0.094 0.906 17 C -0.143 4.143 18 N -0.439 5.439 19 Si 0.737 3.263 20 H -0.195 1.195 21 H -0.204 1.204 22 H -0.188 1.188 23 C -0.222 4.222 24 H 0.041 0.959 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.158 0.842 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.226 0.774 35 H 0.227 0.773 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.136 0.864 39 H 0.088 0.912 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.041 -14.139 3.651 18.307 hybrid contribution 0.094 0.002 0.496 0.505 sum -10.946 -14.137 4.147 18.354 Atomic orbital electron populations 1.22199 0.87585 1.01918 1.00624 1.60387 1.07968 1.14337 1.49995 1.21895 0.94237 0.89564 1.01331 1.21747 0.95113 0.96521 1.03307 1.21042 0.78741 0.96113 1.02500 1.45084 1.06729 1.07309 1.81761 1.15969 0.81813 0.84190 0.78250 1.90979 1.69217 1.28118 1.55906 1.42580 1.04181 1.09376 1.76712 1.17243 0.92073 0.85684 0.97854 1.20072 0.98543 0.99874 1.08937 1.20482 0.97859 0.93774 0.99490 1.21358 0.99150 0.98706 0.98717 1.17514 0.90922 0.90763 0.89075 1.19519 0.94468 1.10972 1.24514 0.90553 1.25840 0.94513 0.97893 0.96017 1.69782 1.02913 1.35845 1.35382 0.86255 0.79720 0.81297 0.79032 1.19491 1.20433 1.18754 1.21118 1.02892 0.93903 1.04237 0.95920 0.91543 0.91390 0.84197 0.94721 0.90406 0.90289 0.91459 0.91827 0.91481 0.77405 0.77277 0.89259 0.88957 0.86431 0.91225 0.87484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.70 60.07 0.64 0.81 16 2 N -0.70 -5.15 6.86 -121.13 -0.83 -5.98 16 3 C 0.06 0.46 5.68 -3.83 -0.02 0.44 16 4 C -0.13 -1.01 5.59 -26.73 -0.15 -1.16 16 5 C 0.14 1.60 5.67 -4.04 -0.02 1.58 16 6 N -0.75 -9.66 5.56 -65.22 -0.36 -10.02 16 7 C 0.70 12.96 8.28 -86.92 -0.72 12.24 16 8 O -0.57 -13.34 14.13 5.29 0.07 -13.27 16 9 N -0.68 -12.46 5.34 -14.27 -0.08 -12.54 16 10 C 0.16 3.80 6.25 -83.76 -0.52 3.27 16 11 C -0.25 -5.64 9.97 -39.10 -0.39 -6.03 16 12 C -0.10 -2.30 10.02 -39.69 -0.40 -2.69 16 13 C -0.16 -4.26 8.62 -38.84 -0.33 -4.60 16 14 C 0.12 3.38 5.50 -106.85 -0.59 2.80 16 15 C -0.46 -13.09 9.04 -37.74 -0.34 -13.43 16 16 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 17 C 0.07 1.91 5.31 -17.34 -0.09 1.82 16 18 N -0.81 -21.81 10.97 55.55 0.61 -21.20 16 19 Si 0.91 19.79 29.56 -169.99 -5.03 14.76 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 23 C -0.20 -5.33 8.39 -38.69 -0.32 -5.65 16 24 H 0.02 0.13 8.14 -51.93 -0.42 -0.29 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.34 2.07 8.82 -39.29 -0.35 1.72 16 28 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.39 3.69 8.49 -40.82 -0.35 3.34 16 35 H 0.39 5.49 8.84 -40.82 -0.36 5.13 16 36 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 37 H 0.09 1.92 8.06 -52.48 -0.42 1.49 16 38 H 0.12 3.23 6.48 -52.49 -0.34 2.89 16 39 H 0.28 6.79 8.30 -40.82 -0.34 6.46 16 40 H 0.11 2.97 6.51 -52.49 -0.34 2.63 16 LS Contribution 337.44 15.07 5.09 5.09 Total: -1.00 -32.74 337.44 -9.72 -42.46 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -5.93 Total: 11.31 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -3.26 Total: -10.61 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.66 Total: -49.74 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.07 Total: -13.27 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.76 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.74 -9.72 -42.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415800451.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.432 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds