Wall clock time and date at job start Mon Mar 30 2020 01:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 110.99641 * 2 1 4 4 C 1.53003 * 109.46757 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46876 * 180.02562 * 4 3 2 6 6 N 1.46503 * 109.47298 * 179.97438 * 5 4 3 7 7 C 1.34771 * 120.00229 * 179.97438 * 6 5 4 8 8 O 1.21588 * 120.00283 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00064 * 180.02562 * 7 6 5 10 10 C 1.39954 * 120.00332 * 174.28599 * 9 7 6 11 11 C 1.39287 * 119.94740 * 145.41890 * 10 9 7 12 12 C 1.38488 * 120.42965 * 179.97438 * 11 10 9 13 13 C 1.37684 * 120.31943 * 0.29646 * 12 11 10 14 14 C 1.40741 * 119.88448 * 359.43409 * 13 12 11 15 15 C 1.41402 * 120.21165 * 180.31428 * 14 13 12 16 16 H 1.08005 * 120.00193 * 214.42933 * 15 14 13 17 17 C 1.39936 * 120.00261 * 34.42542 * 15 14 13 18 18 N 1.30829 * 119.99792 * 5.54066 * 17 15 14 19 19 Si 1.86796 * 120.00084 * 185.53871 * 17 15 14 20 20 H 1.48498 * 109.47298 * 90.00248 * 19 17 15 21 21 H 1.48508 * 109.46888 * 210.00025 * 19 17 15 22 22 H 1.48496 * 109.47281 * 329.99848 * 19 17 15 23 23 C 1.38231 * 119.94527 * 325.39964 * 10 9 7 24 24 H 1.08998 * 109.47279 * 299.99846 * 1 2 3 25 25 H 1.08999 * 109.47195 * 60.00185 * 1 2 3 26 26 H 1.09000 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.00899 * 110.99968 * 123.95870 * 2 1 3 28 28 H 1.09004 * 109.47042 * 60.00349 * 3 2 1 29 29 H 1.08999 * 109.47583 * 300.00262 * 3 2 1 30 30 H 1.08995 * 109.47215 * 60.00109 * 4 3 2 31 31 H 1.09000 * 109.46973 * 299.99681 * 4 3 2 32 32 H 1.09004 * 109.47165 * 60.00146 * 5 4 3 33 33 H 1.08999 * 109.47342 * 300.00131 * 5 4 3 34 34 H 0.97007 * 119.99378 * 0.02562 * 6 5 4 35 35 H 0.97005 * 119.99652 * 354.28660 * 9 7 6 36 36 H 1.08000 * 119.78500 * 359.97438 * 11 10 9 37 37 H 1.08005 * 119.84069 * 180.02562 * 12 11 10 38 38 H 1.08002 * 120.05909 * 179.70650 * 13 12 11 39 39 H 0.97001 * 120.00167 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.16362 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5248 1.3306 -0.0006 5 6 4.0731 2.7590 0.0000 6 7 5.5376 2.7200 0.0000 7 6 6.2423 3.8688 0.0000 8 8 5.6627 4.9376 0.0005 9 7 7.5896 3.8329 -0.0005 10 6 8.3213 5.0198 -0.1212 11 6 9.5339 5.1604 0.5495 12 6 10.2664 6.3303 0.4367 13 6 9.8002 7.3705 -0.3356 14 6 8.5793 7.2407 -1.0236 15 6 8.0973 8.3020 -1.8240 16 1 7.0354 8.4864 -1.8942 17 6 8.9961 9.1137 -2.5252 18 7 10.2723 8.8258 -2.5279 19 14 8.3737 10.6081 -3.4571 20 1 8.3890 11.7921 -2.5610 21 1 9.2513 10.8621 -4.6280 22 1 6.9862 10.3582 -3.9235 23 6 7.8395 6.0506 -0.9061 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8306 -0.5262 0.7813 28 1 1.6459 1.8947 0.8900 29 1 1.6458 1.8948 -0.8899 30 1 3.8740 0.8074 -0.8908 31 1 3.8747 0.8072 0.8891 32 1 3.7239 3.2818 0.8905 33 1 3.7232 3.2829 -0.8895 34 1 6.0000 1.8673 -0.0008 35 1 8.0522 2.9843 0.0827 36 1 9.9054 4.3517 1.1615 37 1 11.2057 6.4289 0.9606 38 1 10.3725 8.2828 -0.4168 39 1 10.8954 9.3882 -3.0142 40 1 6.8997 5.9424 -1.4271 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415800451.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:42 Heat of formation + Delta-G solvation = -38.482340 kcal Electronic energy + Delta-G solvation = -20365.549783 eV Core-core repulsion = 17178.555473 eV Total energy + Delta-G solvation = -3186.994310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.42844 -39.23340 -37.83733 -36.23528 -35.81930 -34.79098 -32.33120 -31.71232 -29.76783 -27.30426 -27.05266 -24.45520 -23.19755 -22.69596 -22.57677 -21.54922 -19.58135 -19.19158 -17.59692 -17.23108 -17.13045 -16.55136 -16.38684 -16.09314 -15.67923 -15.55198 -15.00473 -14.83024 -14.71987 -14.52628 -13.97293 -13.56187 -13.36985 -12.96982 -12.91292 -12.87373 -12.81979 -12.46861 -12.35556 -12.17462 -12.01452 -11.86700 -11.51231 -11.21632 -11.07532 -10.76131 -10.12144 -9.44102 -9.30091 -8.69736 -8.50076 -6.38592 0.93619 1.02573 1.36684 1.47161 1.51597 1.69336 2.19068 2.24078 2.80714 3.16542 3.40900 3.71577 3.98218 4.13671 4.15848 4.45134 4.48262 4.56244 4.61813 4.63151 4.70529 4.75500 5.04072 5.04454 5.08944 5.13558 5.15173 5.16624 5.22476 5.34675 5.46795 5.74081 5.84855 5.97460 6.06021 6.12971 6.19897 6.39567 6.45301 6.71231 6.97069 7.02218 7.12315 7.60660 8.43216 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022973 B = 0.003125 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.549966 B = 8956.545683 C =10025.931653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.703 5.703 3 C 0.061 3.939 4 C -0.111 4.111 5 C 0.140 3.860 6 N -0.725 5.725 7 C 0.692 3.308 8 O -0.621 6.621 9 N -0.670 5.670 10 C 0.171 3.829 11 C -0.238 4.238 12 C -0.094 4.094 13 C -0.184 4.184 14 C 0.087 3.913 15 C -0.508 4.508 16 H 0.059 0.941 17 C 0.033 3.967 18 N -0.838 5.838 19 Si 0.984 3.016 20 H -0.260 1.260 21 H -0.263 1.263 22 H -0.267 1.267 23 C -0.227 4.227 24 H 0.025 0.975 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.350 0.650 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.415 0.585 35 H 0.419 0.581 36 H 0.136 0.864 37 H 0.127 0.873 38 H 0.102 0.898 39 H 0.286 0.714 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.287 -17.255 5.251 20.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.335 5.335 3 C -0.069 4.069 4 C -0.149 4.149 5 C 0.015 3.985 6 N -0.382 5.382 7 C 0.393 3.607 8 O -0.501 6.501 9 N -0.318 5.318 10 C 0.077 3.923 11 C -0.260 4.260 12 C -0.113 4.113 13 C -0.204 4.204 14 C 0.085 3.915 15 C -0.539 4.539 16 H 0.078 0.922 17 C -0.179 4.179 18 N -0.466 5.466 19 Si 0.805 3.195 20 H -0.185 1.185 21 H -0.187 1.187 22 H -0.191 1.191 23 C -0.249 4.249 24 H 0.044 0.956 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.168 0.832 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.252 0.748 35 H 0.257 0.743 36 H 0.154 0.846 37 H 0.144 0.856 38 H 0.120 0.880 39 H 0.096 0.904 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.615 -16.359 4.459 20.005 hybrid contribution -0.067 0.477 0.341 0.591 sum -10.682 -15.882 4.800 19.733 Atomic orbital electron populations 1.22234 0.87008 1.02678 1.00527 1.60372 1.08624 1.13878 1.50616 1.21830 0.94095 0.90023 1.00975 1.21591 0.94973 0.93887 1.04428 1.21153 0.77606 0.98438 1.01308 1.44866 1.07202 1.06557 1.79620 1.16231 0.81852 0.84783 0.77875 1.90958 1.70224 1.30706 1.58194 1.42317 1.04147 1.09030 1.76338 1.17301 0.92488 0.86284 0.96223 1.20522 0.97335 1.00403 1.07717 1.20872 0.99004 0.93172 0.98258 1.21305 0.99078 0.99540 1.00504 1.17844 0.92178 0.91529 0.89964 1.19664 0.94151 1.13176 1.26872 0.92239 1.26648 0.94536 1.00399 0.96351 1.69828 1.03821 1.36966 1.35939 0.85182 0.78955 0.77314 0.78040 1.18456 1.18699 1.19123 1.21054 1.02368 0.95264 1.06177 0.95613 0.92071 0.90220 0.83205 0.94677 0.91356 0.89847 0.89509 0.92678 0.93242 0.74818 0.74322 0.84641 0.85562 0.88039 0.90361 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.70 127.69 1.37 1.64 16 2 N -0.70 -9.05 6.86 -537.15 -3.68 -12.73 16 3 C 0.06 0.86 5.68 86.31 0.49 1.35 16 4 C -0.11 -1.50 5.59 30.60 0.17 -1.33 16 5 C 0.14 3.05 5.67 86.38 0.49 3.54 16 6 N -0.72 -17.36 5.56 -478.53 -2.66 -20.02 16 7 C 0.69 25.31 8.28 179.06 1.48 26.80 16 8 O -0.62 -30.14 14.13 -3.99 -0.06 -30.19 16 9 N -0.67 -23.28 5.34 -317.33 -1.70 -24.98 16 10 C 0.17 7.80 6.25 38.09 0.24 8.04 16 11 C -0.24 -9.98 9.97 22.58 0.23 -9.76 16 12 C -0.09 -4.32 10.02 22.20 0.22 -4.10 16 13 C -0.18 -10.08 8.62 22.75 0.20 -9.88 16 14 C 0.09 5.16 5.50 -21.31 -0.12 5.04 16 15 C -0.51 -30.34 9.04 23.46 0.21 -30.13 16 16 H 0.06 3.59 7.85 -2.91 -0.02 3.56 16 17 C 0.03 1.80 5.31 85.25 0.45 2.25 16 18 N -0.84 -46.13 10.97 21.82 0.24 -45.89 16 19 Si 0.98 41.60 29.56 68.60 2.03 43.63 16 20 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 21 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 C -0.23 -12.57 8.39 22.85 0.19 -12.38 16 24 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.35 3.39 8.82 -89.69 -0.79 2.60 16 28 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.41 6.44 8.49 -92.70 -0.79 5.65 16 35 H 0.42 10.21 8.84 -92.70 -0.82 9.39 16 36 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.13 4.86 8.06 -2.91 -0.02 4.83 16 38 H 0.10 5.77 6.48 -2.91 -0.02 5.76 16 39 H 0.29 14.19 8.30 -92.71 -0.77 13.42 16 40 H 0.08 4.87 6.51 -2.91 -0.02 4.86 16 Total: -1.00 -75.36 337.44 -1.53 -76.90 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: -1.33 Total: 32.20 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: 5.62 Total: -18.91 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -7.80 Total: -103.62 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.06 Total: -30.19 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -75.36 -1.53 -76.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415800451.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.416 kcal (2) G-P(sol) polarization free energy of solvation -75.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds