Wall clock time and date at job start Mon Mar 30 2020 01:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34259 * 125.75484 * 2 1 4 4 C 1.38049 * 107.41597 * 180.02562 * 3 2 1 5 5 C 1.47425 * 126.41465 * 179.97438 * 4 3 2 6 6 O 1.21603 * 120.00000 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99743 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72398 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 C 1.50700 * 109.47208 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99770 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99720 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00513 * 0.02562 * 12 10 9 14 14 Si 1.86809 * 119.99651 * 179.97438 * 12 10 9 15 15 H 1.48491 * 109.47115 * 89.99974 * 14 12 10 16 16 H 1.48509 * 109.46780 * 210.00159 * 14 12 10 17 17 H 1.48497 * 109.46888 * 329.99916 * 14 12 10 18 18 C 1.41292 * 107.16918 * 0.23255 * 4 3 2 19 19 C 1.50699 * 125.98838 * 179.74107 * 18 4 3 20 20 C 1.53785 * 113.61368 * 219.13759 * 19 18 4 21 21 C 1.53955 * 87.01649 * 220.04640 * 20 19 18 22 22 C 1.53774 * 113.61855 * 121.52505 * 19 18 4 23 23 N 1.30447 * 108.02271 * 359.61324 * 18 4 3 24 24 H 1.09000 * 109.47394 * 89.99335 * 1 2 3 25 25 H 1.08997 * 109.47440 * 209.99730 * 1 2 3 26 26 H 1.09007 * 109.46953 * 329.99660 * 1 2 3 27 27 H 1.07999 * 126.29421 * 0.02562 * 3 2 1 28 28 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 29 29 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 30 30 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 31 31 H 1.08995 * 109.46638 * 300.00121 * 9 8 7 32 32 H 1.09006 * 109.47139 * 60.00254 * 9 8 7 33 33 H 0.96999 * 120.00239 * 180.02562 * 13 12 10 34 34 H 1.09007 * 112.84757 * 350.32873 * 19 18 4 35 35 H 1.09000 * 113.60877 * 334.56103 * 20 19 18 36 36 H 1.08993 * 113.61517 * 105.46569 * 20 19 18 37 37 H 1.09006 * 113.53618 * 270.81142 * 21 20 19 38 38 H 1.09000 * 113.74407 * 139.94451 * 21 20 19 39 39 H 1.08999 * 113.61658 * 254.53453 * 22 19 18 40 40 H 1.09007 * 113.61392 * 25.43087 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5599 0.6552 -0.0006 5 6 4.7639 1.5060 -0.0013 6 8 5.8682 0.9968 -0.0023 7 7 4.6406 2.8481 -0.0010 8 6 5.8370 3.6935 0.0044 9 6 5.4210 5.1659 0.0107 10 6 6.6518 6.0356 0.0156 11 1 7.6325 5.5833 0.0147 12 6 6.5256 7.4086 0.0211 13 7 5.3314 7.9593 0.0226 14 14 8.0513 8.4866 0.0279 15 1 8.4576 8.7780 -1.3703 16 1 7.7547 9.7596 0.7329 17 1 9.1541 7.7791 0.7267 18 6 3.5310 -0.7574 -0.0064 19 6 4.7321 -1.6676 -0.0146 20 6 4.5597 -2.9070 -0.9086 21 6 5.2757 -3.7044 0.1967 22 6 4.7824 -2.6319 1.1822 23 7 2.2826 -1.1356 -0.0008 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.9166 2.1170 0.0004 28 1 3.7597 3.2543 0.0002 29 1 6.4292 3.4795 0.8942 30 1 6.4314 3.4877 -0.8858 31 1 4.8289 5.3799 -0.8790 32 1 4.8267 5.3718 0.9010 33 1 5.2427 8.9252 0.0262 34 1 5.6669 -1.1334 -0.1845 35 1 3.5197 -3.1992 -1.0538 36 1 5.1196 -2.8533 -1.8421 37 1 6.3596 -3.7281 0.0837 38 1 4.8470 -4.6908 0.3741 39 1 5.5220 -2.3565 1.9341 40 1 3.8034 -2.8489 1.6096 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425247173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:03 Heat of formation + Delta-G solvation = 21.862286 kcal Electronic energy + Delta-G solvation = -20868.525541 eV Core-core repulsion = 17684.147971 eV Total energy + Delta-G solvation = -3184.377571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.50699 -40.10685 -39.36005 -36.51949 -34.79422 -34.20515 -32.22165 -30.71634 -28.73873 -26.98619 -26.50121 -25.81930 -23.63715 -22.81019 -21.75589 -20.97242 -19.77740 -18.78623 -18.43083 -17.11381 -16.75133 -16.52155 -16.40238 -16.24989 -16.10503 -15.87246 -14.90034 -14.71357 -14.32281 -14.14506 -13.88358 -13.62230 -13.35076 -13.31407 -13.17901 -12.93576 -12.85764 -12.51562 -12.20580 -12.09349 -11.69603 -11.56739 -11.45281 -11.38003 -11.26494 -10.66571 -10.58258 -10.29889 -10.05000 -9.56896 -8.22472 -6.32176 0.52004 1.07534 1.43247 1.43477 1.45901 1.55091 2.33175 2.46940 2.51355 3.12470 3.33406 3.60582 3.82027 3.84145 3.91919 4.06380 4.22776 4.25220 4.44049 4.50009 4.54175 4.55491 4.66460 4.71804 4.80137 4.85335 4.89440 4.95659 5.06542 5.07758 5.29885 5.33785 5.41467 5.53102 5.61996 5.63631 5.81433 5.91174 6.19229 6.53183 6.75528 6.81093 7.36833 7.37528 8.89320 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023302 B = 0.003471 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.349063 B = 8065.618127 C = 9116.244016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.357 5.357 3 C 0.119 3.881 4 C -0.319 4.319 5 C 0.586 3.414 6 O -0.588 6.588 7 N -0.714 5.714 8 C 0.143 3.857 9 C 0.024 3.976 10 C -0.547 4.547 11 H 0.058 0.942 12 C 0.008 3.992 13 N -0.926 5.926 14 Si 0.963 3.037 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.267 1.267 18 C 0.131 3.869 19 C -0.057 4.057 20 C -0.123 4.123 21 C -0.127 4.127 22 C -0.123 4.123 23 N -0.314 5.314 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.121 0.879 27 H 0.221 0.779 28 H 0.407 0.593 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.266 0.734 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.862 -18.737 0.142 22.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.134 5.134 3 C -0.034 4.034 4 C -0.334 4.334 5 C 0.375 3.625 6 O -0.470 6.470 7 N -0.365 5.365 8 C 0.020 3.980 9 C -0.013 4.013 10 C -0.585 4.585 11 H 0.076 0.924 12 C -0.190 4.190 13 N -0.565 5.565 14 Si 0.788 3.212 15 H -0.198 1.198 16 H -0.205 1.205 17 H -0.191 1.191 18 C -0.036 4.036 19 C -0.077 4.077 20 C -0.161 4.161 21 C -0.164 4.164 22 C -0.161 4.161 23 N -0.136 5.136 24 H 0.113 0.887 25 H 0.116 0.884 26 H 0.140 0.860 27 H 0.237 0.763 28 H 0.243 0.757 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.074 0.926 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.189 -19.911 0.147 23.347 hybrid contribution 0.802 1.959 -0.021 2.117 sum -11.387 -17.953 0.126 21.260 Atomic orbital electron populations 1.22431 0.70599 1.06753 1.05438 1.48711 1.08545 1.03002 1.53158 1.23588 0.89311 0.95368 0.95174 1.20285 0.93122 0.94149 1.25837 1.17664 0.88008 0.81750 0.75084 1.90648 1.28664 1.74332 1.53384 1.45907 1.10610 1.05317 1.74635 1.21209 0.86573 0.90525 0.99742 1.19127 0.96472 0.89286 0.96447 1.21479 0.93576 0.92025 1.51420 0.92418 1.25835 0.99235 0.99516 0.94454 1.70045 1.23935 1.11455 1.51097 0.85475 0.79362 0.77902 0.78495 1.19802 1.20505 1.19150 1.22363 0.93540 0.92282 0.95411 1.21403 0.93577 0.92814 0.99926 1.22935 1.01475 0.94176 0.97542 1.22792 1.00839 0.97918 0.94859 1.22873 1.01691 0.95678 0.95873 1.77004 1.01011 1.08394 1.27180 0.88719 0.88353 0.86042 0.76278 0.75677 0.93680 0.93646 0.97143 0.97134 0.92558 0.87709 0.89742 0.91172 0.89338 0.89567 0.91546 0.90106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 11.44 127.77 1.46 2.22 16 2 N -0.36 -7.09 3.98 -367.77 -1.46 -8.55 16 3 C 0.12 2.53 10.99 84.28 0.93 3.46 16 4 C -0.32 -9.68 6.13 -20.15 -0.12 -9.80 16 5 C 0.59 21.73 7.81 86.66 0.68 22.41 16 6 O -0.59 -25.88 14.70 -4.04 -0.06 -25.94 16 7 N -0.71 -25.62 5.54 -466.36 -2.59 -28.20 16 8 C 0.14 6.27 5.61 86.38 0.48 6.75 16 9 C 0.02 1.21 5.09 29.85 0.15 1.36 16 10 C -0.55 -30.54 9.11 25.60 0.23 -30.30 16 11 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 12 C 0.01 0.47 5.46 84.65 0.46 0.93 16 13 N -0.93 -53.73 13.29 21.45 0.28 -53.45 16 14 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 C 0.13 3.91 6.31 43.52 0.27 4.18 16 19 C -0.06 -1.61 3.96 -11.01 -0.04 -1.65 16 20 C -0.12 -2.78 7.63 31.18 0.24 -2.55 16 21 C -0.13 -2.41 8.09 31.18 0.25 -2.16 16 22 C -0.12 -2.89 7.63 31.12 0.24 -2.65 16 23 N -0.31 -8.27 12.13 -46.68 -0.57 -8.84 16 24 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.12 0.38 8.14 -2.38 -0.02 0.36 16 27 H 0.22 2.83 7.46 -2.91 -0.02 2.81 16 28 H 0.41 11.97 7.40 -92.71 -0.69 11.29 16 29 H 0.04 2.06 8.14 -2.38 -0.02 2.05 16 30 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 34 H 0.10 3.55 6.00 -2.38 -0.01 3.53 16 35 H 0.08 1.90 7.80 -2.39 -0.02 1.88 16 36 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 1.87 8.09 -2.38 -0.02 1.85 16 Total: -1.00 -73.35 338.13 3.22 -70.13 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.35 Total: 17.11 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 5.23 Total: -7.81 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -4.33 Total: -99.04 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.06 Total: -25.94 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -73.35 3.22 -70.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425247173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.991 kcal (2) G-P(sol) polarization free energy of solvation -73.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds