Wall clock time and date at job start Mon Mar 30 2020 01:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 119.99678 * 2 1 4 4 C 1.39668 * 120.00000 * 179.72289 * 2 1 3 5 5 C 1.38937 * 120.07554 * 173.97514 * 4 2 1 6 6 C 1.38078 * 119.92753 * 179.79108 * 5 4 2 7 7 C 1.38312 * 120.07285 * 0.49141 * 6 5 4 8 8 C 1.38258 * 120.15142 * 359.74022 * 7 6 5 9 9 C 1.50697 * 119.96388 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.46895 * 270.01636 * 9 8 7 11 11 C 1.34771 * 120.00327 * 179.97438 * 10 9 8 12 12 O 1.21590 * 119.99972 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00447 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00620 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.47589 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99740 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99930 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00350 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99653 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47221 * 59.99729 * 19 17 15 21 21 H 1.48502 * 109.47184 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47226 * 299.99950 * 19 17 15 23 23 C 1.38131 * 120.07511 * 0.02562 * 8 7 6 24 24 H 1.09004 * 109.47302 * 270.27467 * 1 2 3 25 25 H 1.08991 * 109.47526 * 30.27488 * 1 2 3 26 26 H 1.09000 * 109.47127 * 150.28055 * 1 2 3 27 27 H 1.09000 * 109.46659 * 184.75494 * 3 2 1 28 28 H 1.09007 * 109.47002 * 304.74895 * 3 2 1 29 29 H 1.09001 * 109.47207 * 64.74653 * 3 2 1 30 30 H 1.08006 * 120.03121 * 0.02562 * 5 4 2 31 31 H 1.07995 * 119.96369 * 180.20673 * 6 5 4 32 32 H 1.08001 * 119.92455 * 179.76660 * 7 6 5 33 33 H 1.08995 * 109.47535 * 30.01529 * 9 8 7 34 34 H 1.08997 * 109.47469 * 150.02262 * 9 8 7 35 35 H 0.97005 * 119.99820 * 0.02562 * 10 9 8 36 36 H 0.97005 * 119.99700 * 0.02562 * 13 11 10 37 37 H 1.08994 * 109.47238 * 300.01078 * 14 13 11 38 38 H 1.09009 * 109.46551 * 60.00582 * 14 13 11 39 39 H 0.96996 * 120.00485 * 180.02562 * 18 17 15 40 40 H 1.07995 * 120.04074 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1633 -1.2095 0.0058 5 6 3.5470 -1.2153 -0.1203 6 6 4.2347 -2.4126 -0.1098 7 6 3.5468 -3.6059 0.0159 8 6 2.1695 -3.6041 0.1368 9 6 1.4243 -4.9068 0.2742 10 7 1.0625 -5.4048 -1.0553 11 6 0.3863 -6.5639 -1.1796 12 8 0.0761 -7.1962 -0.1884 13 7 0.0529 -7.0219 -2.4026 14 6 -0.6816 -8.2821 -2.5378 15 6 -0.9274 -8.5663 -3.9972 16 1 -0.5716 -7.8772 -4.7489 17 6 -1.6065 -9.7060 -4.3728 18 7 -2.0402 -10.5448 -3.4575 19 14 -1.9105 -10.0585 -6.1819 20 1 -0.6100 -10.1657 -6.8906 21 1 -2.6563 -11.3353 -6.3189 22 1 -2.7075 -8.9543 -6.7743 23 6 1.4757 -2.4097 0.1319 24 1 -0.3634 0.0049 1.0277 25 1 -0.3634 0.8874 -0.5180 26 1 -0.3633 -0.8925 -0.5095 27 1 3.2660 1.0713 -0.0852 28 1 1.8718 1.8763 -0.8444 29 1 1.9994 1.8026 0.9295 30 1 4.0843 -0.2840 -0.2227 31 1 5.3105 -2.4175 -0.2045 32 1 4.0868 -4.5412 0.0200 33 1 2.0590 -5.6374 0.7755 34 1 0.5197 -4.7478 0.8611 35 1 1.3103 -4.9006 -1.8461 36 1 0.3001 -6.5173 -3.1933 37 1 -0.0960 -9.0924 -2.1038 38 1 -1.6360 -8.2041 -2.0168 39 1 -2.5176 -11.3467 -3.7217 40 1 0.3999 -2.4090 0.2260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426415598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:24 Heat of formation + Delta-G solvation = 4.302651 kcal Electronic energy + Delta-G solvation = -20391.489860 eV Core-core repulsion = 17206.350846 eV Total energy + Delta-G solvation = -3185.139014 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.99016 -38.97052 -36.69408 -34.52576 -33.88253 -32.30000 -31.27745 -30.22239 -28.69460 -27.23573 -25.38304 -25.01141 -22.47847 -21.81039 -20.47666 -20.08583 -18.13523 -17.46282 -16.13392 -16.01734 -15.63282 -15.56540 -15.33339 -14.84724 -14.58645 -14.24811 -13.98091 -13.69696 -13.32675 -12.98821 -12.86903 -12.64244 -12.56718 -12.29254 -12.06063 -11.89559 -11.66052 -11.43186 -10.95833 -10.89173 -10.83026 -10.26179 -10.05827 -9.43056 -9.33724 -8.91013 -8.71499 -8.60725 -7.68727 -7.49061 -6.11005 -4.17384 1.20603 1.47225 2.86127 3.28751 3.32724 3.34372 3.44552 3.91174 4.03379 4.37367 4.50489 4.67960 4.78385 4.93867 4.99756 5.05981 5.23812 5.24377 5.24888 5.29255 5.33115 5.40084 5.44401 5.50196 5.77326 5.82538 5.95047 6.11629 6.40413 6.59811 6.70739 6.93152 6.98386 7.19729 7.27551 7.57941 7.61606 7.63040 7.97308 8.10654 8.81813 9.01562 9.39607 9.54143 10.99276 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025796 B = 0.002903 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.188066 B = 9643.509680 C = 9974.578795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.641 5.641 3 C 0.091 3.909 4 C 0.209 3.791 5 C -0.197 4.197 6 C -0.075 4.075 7 C -0.157 4.157 8 C -0.053 4.053 9 C 0.181 3.819 10 N -0.752 5.752 11 C 0.693 3.307 12 O -0.602 6.602 13 N -0.730 5.730 14 C 0.267 3.733 15 C -0.542 4.542 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.904 3.096 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.176 4.176 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.392 0.608 36 H 0.386 0.614 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.266 0.734 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.463 23.888 6.012 26.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.353 5.353 3 C -0.052 4.052 4 C 0.108 3.892 5 C -0.219 4.219 6 C -0.094 4.094 7 C -0.178 4.178 8 C -0.054 4.054 9 C 0.057 3.943 10 N -0.410 5.410 11 C 0.392 3.608 12 O -0.481 6.481 13 N -0.382 5.382 14 C 0.146 3.854 15 C -0.580 4.580 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.199 4.199 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.225 0.775 36 H 0.218 0.782 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.076 0.924 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.919 23.229 6.957 26.198 hybrid contribution 0.001 0.331 -1.682 1.714 sum 9.920 23.560 5.275 26.102 Atomic orbital electron populations 1.21616 0.79378 1.02774 1.01216 1.46272 1.05025 1.03044 1.80993 1.21673 0.97673 0.85019 1.00871 1.17805 0.91239 0.85653 0.94458 1.20721 0.92298 0.98641 1.10245 1.20871 0.99423 0.91818 0.97269 1.20906 0.93564 0.98199 1.05128 1.19719 0.93751 0.93988 0.97965 1.19912 0.98410 0.91065 0.84917 1.45163 1.62900 1.24748 1.08186 1.16154 0.79033 0.80630 0.84939 1.90870 1.60861 1.59233 1.37171 1.45707 1.60371 1.27306 1.04809 1.18964 0.91099 0.78753 0.96570 1.21203 1.37725 1.07574 0.91501 0.92021 1.24942 0.95247 0.95722 0.98122 1.69967 1.37211 1.12063 1.33109 0.86477 0.78395 0.77640 0.84373 1.20102 1.21100 1.20121 1.20622 0.99816 0.90532 1.08951 0.93418 0.91635 0.91094 0.90436 0.92738 0.93149 0.86072 0.86087 0.86053 0.91051 0.91289 0.77480 0.78194 0.95763 0.95772 0.92434 0.85814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.10 59.85 0.60 1.29 16 2 N -0.64 -5.60 3.41 -187.55 -0.64 -6.24 16 3 C 0.09 0.56 10.63 59.85 0.64 1.19 16 4 C 0.21 2.18 6.53 -83.79 -0.55 1.63 16 5 C -0.20 -1.87 9.31 -39.38 -0.37 -2.24 16 6 C -0.08 -0.72 10.04 -39.61 -0.40 -1.12 16 7 C -0.16 -1.72 9.70 -39.55 -0.38 -2.10 16 8 C -0.05 -0.63 5.24 -104.66 -0.55 -1.18 16 9 C 0.18 2.57 5.80 -5.19 -0.03 2.54 16 10 N -0.75 -11.99 5.55 -66.42 -0.37 -12.35 16 11 C 0.69 14.86 8.57 -86.93 -0.74 14.12 16 12 O -0.60 -15.53 16.34 5.29 0.09 -15.44 16 13 N -0.73 -16.17 5.55 -66.42 -0.37 -16.54 16 14 C 0.27 7.33 5.43 -5.20 -0.03 7.30 16 15 C -0.54 -15.02 9.28 -34.44 -0.32 -15.34 16 16 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 17 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 19 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 C -0.18 -1.99 8.81 -39.38 -0.35 -2.34 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.38 8.07 -51.93 -0.42 -0.04 16 26 H 0.07 0.56 6.46 -51.93 -0.34 0.22 16 27 H 0.08 0.42 5.32 -51.93 -0.28 0.15 16 28 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.12 0.91 5.75 -52.48 -0.30 0.61 16 31 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 34 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 35 H 0.39 5.30 8.48 -40.82 -0.35 4.95 16 36 H 0.39 7.35 8.34 -40.82 -0.34 7.01 16 37 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.02 0.73 8.14 -51.92 -0.42 0.31 16 39 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.12 1.35 6.31 -52.49 -0.33 1.01 16 LS Contribution 337.51 15.07 5.09 5.09 Total: -1.00 -34.02 337.51 -8.74 -42.76 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -5.68 Total: 6.96 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -2.57 Total: 5.45 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: -0.64 Total: -60.93 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: 0.09 Total: -15.44 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.02 -8.74 -42.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426415598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.062 kcal (2) G-P(sol) polarization free energy of solvation -34.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds