Wall clock time and date at job start Mon Mar 30 2020 01:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 119.99678 * 2 1 4 4 C 1.39668 * 120.00000 * 179.72289 * 2 1 3 5 5 C 1.38937 * 120.07554 * 173.97514 * 4 2 1 6 6 C 1.38078 * 119.92753 * 179.79108 * 5 4 2 7 7 C 1.38312 * 120.07285 * 0.49141 * 6 5 4 8 8 C 1.38258 * 120.15142 * 359.74022 * 7 6 5 9 9 C 1.50697 * 119.96388 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.46895 * 270.01636 * 9 8 7 11 11 C 1.34771 * 120.00327 * 179.97438 * 10 9 8 12 12 O 1.21590 * 119.99972 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00447 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00620 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.47589 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99740 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99930 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00350 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99653 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47221 * 59.99729 * 19 17 15 21 21 H 1.48502 * 109.47184 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47226 * 299.99950 * 19 17 15 23 23 C 1.38131 * 120.07511 * 0.02562 * 8 7 6 24 24 H 1.09004 * 109.47302 * 270.27467 * 1 2 3 25 25 H 1.08991 * 109.47526 * 30.27488 * 1 2 3 26 26 H 1.09000 * 109.47127 * 150.28055 * 1 2 3 27 27 H 1.09000 * 109.46659 * 184.75494 * 3 2 1 28 28 H 1.09007 * 109.47002 * 304.74895 * 3 2 1 29 29 H 1.09001 * 109.47207 * 64.74653 * 3 2 1 30 30 H 1.08006 * 120.03121 * 0.02562 * 5 4 2 31 31 H 1.07995 * 119.96369 * 180.20673 * 6 5 4 32 32 H 1.08001 * 119.92455 * 179.76660 * 7 6 5 33 33 H 1.08995 * 109.47535 * 30.01529 * 9 8 7 34 34 H 1.08997 * 109.47469 * 150.02262 * 9 8 7 35 35 H 0.97005 * 119.99820 * 0.02562 * 10 9 8 36 36 H 0.97005 * 119.99700 * 0.02562 * 13 11 10 37 37 H 1.08994 * 109.47238 * 300.01078 * 14 13 11 38 38 H 1.09009 * 109.46551 * 60.00582 * 14 13 11 39 39 H 0.96996 * 120.00485 * 180.02562 * 18 17 15 40 40 H 1.07995 * 120.04074 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1633 -1.2095 0.0058 5 6 3.5470 -1.2153 -0.1203 6 6 4.2347 -2.4126 -0.1098 7 6 3.5468 -3.6059 0.0159 8 6 2.1695 -3.6041 0.1368 9 6 1.4243 -4.9068 0.2742 10 7 1.0625 -5.4048 -1.0553 11 6 0.3863 -6.5639 -1.1796 12 8 0.0761 -7.1962 -0.1884 13 7 0.0529 -7.0219 -2.4026 14 6 -0.6816 -8.2821 -2.5378 15 6 -0.9274 -8.5663 -3.9972 16 1 -0.5716 -7.8772 -4.7489 17 6 -1.6065 -9.7060 -4.3728 18 7 -2.0402 -10.5448 -3.4575 19 14 -1.9105 -10.0585 -6.1819 20 1 -0.6100 -10.1657 -6.8906 21 1 -2.6563 -11.3353 -6.3189 22 1 -2.7075 -8.9543 -6.7743 23 6 1.4757 -2.4097 0.1319 24 1 -0.3634 0.0049 1.0277 25 1 -0.3634 0.8874 -0.5180 26 1 -0.3633 -0.8925 -0.5095 27 1 3.2660 1.0713 -0.0852 28 1 1.8718 1.8763 -0.8444 29 1 1.9994 1.8026 0.9295 30 1 4.0843 -0.2840 -0.2227 31 1 5.3105 -2.4175 -0.2045 32 1 4.0868 -4.5412 0.0200 33 1 2.0590 -5.6374 0.7755 34 1 0.5197 -4.7478 0.8611 35 1 1.3103 -4.9006 -1.8461 36 1 0.3001 -6.5173 -3.1933 37 1 -0.0960 -9.0924 -2.1038 38 1 -1.6360 -8.2041 -2.0168 39 1 -2.5176 -11.3467 -3.7217 40 1 0.3999 -2.4090 0.2260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426415598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:23 Heat of formation + Delta-G solvation = -19.634493 kcal Electronic energy + Delta-G solvation = -20392.527852 eV Core-core repulsion = 17206.350846 eV Total energy + Delta-G solvation = -3186.177006 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.07026 -40.41212 -37.52582 -36.20510 -35.53339 -34.32780 -32.33507 -31.00435 -29.56703 -28.93684 -26.65472 -25.67805 -24.47330 -22.63906 -21.86840 -21.31795 -19.82281 -18.43911 -17.88379 -17.30048 -16.95870 -16.44997 -16.36940 -16.33479 -15.92363 -15.40096 -15.04225 -14.96146 -14.74653 -14.19233 -14.12088 -13.97335 -13.41933 -13.37537 -13.35621 -12.91351 -12.88693 -12.72548 -12.66298 -12.28302 -12.21975 -11.69415 -11.48541 -11.31316 -10.78157 -10.73778 -10.27849 -9.79023 -9.57757 -8.26783 -8.18852 -6.43377 0.35392 0.67994 1.44227 1.48906 1.56931 1.98320 2.24683 2.26532 2.41344 2.96760 3.07885 3.62692 3.65803 3.98237 4.07788 4.26816 4.35824 4.48612 4.52723 4.53544 4.65006 4.70912 4.77803 4.89697 4.91651 4.96306 5.08818 5.10628 5.28884 5.33529 5.48771 5.51051 5.62695 5.68889 5.76510 5.86545 5.93203 6.26901 6.35458 6.56480 6.68098 7.25565 7.31650 7.72733 8.85490 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025796 B = 0.002903 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.188066 B = 9643.509680 C = 9974.578795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.646 5.646 3 C 0.085 3.915 4 C 0.202 3.798 5 C -0.196 4.196 6 C -0.072 4.072 7 C -0.168 4.168 8 C -0.061 4.061 9 C 0.184 3.816 10 N -0.727 5.727 11 C 0.692 3.308 12 O -0.649 6.649 13 N -0.723 5.723 14 C 0.286 3.714 15 C -0.556 4.556 16 H 0.083 0.917 17 C 0.004 3.996 18 N -0.931 5.931 19 Si 0.987 3.013 20 H -0.262 1.262 21 H -0.285 1.285 22 H -0.262 1.262 23 C -0.189 4.189 24 H 0.049 0.951 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.124 0.876 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.408 0.592 36 H 0.404 0.596 37 H -0.014 1.014 38 H -0.014 1.014 39 H 0.269 0.731 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.777 26.329 4.176 29.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.358 5.358 3 C -0.057 4.057 4 C 0.100 3.900 5 C -0.218 4.218 6 C -0.091 4.091 7 C -0.188 4.188 8 C -0.062 4.062 9 C 0.060 3.940 10 N -0.384 5.384 11 C 0.391 3.609 12 O -0.532 6.532 13 N -0.377 5.377 14 C 0.162 3.838 15 C -0.594 4.594 16 H 0.101 0.899 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.809 3.191 20 H -0.187 1.187 21 H -0.210 1.210 22 H -0.187 1.187 23 C -0.212 4.212 24 H 0.067 0.933 25 H 0.102 0.898 26 H 0.080 0.920 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.163 0.837 31 H 0.164 0.836 32 H 0.142 0.858 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.244 0.756 36 H 0.239 0.761 37 H 0.004 0.996 38 H 0.004 0.996 39 H 0.078 0.922 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.274 25.772 5.104 28.589 hybrid contribution -0.370 -0.303 -1.013 1.120 sum 10.904 25.469 4.091 28.005 Atomic orbital electron populations 1.21694 0.78976 1.03206 1.01478 1.46524 1.05598 1.03329 1.80338 1.21852 0.97937 0.84035 1.01856 1.17972 0.91891 0.85975 0.94191 1.21043 0.92017 0.99680 1.09056 1.21158 1.00709 0.91153 0.96067 1.21016 0.93123 0.99148 1.05562 1.19449 0.94096 0.92705 0.99930 1.19955 0.98235 0.92318 0.83497 1.44948 1.60839 1.22688 1.09888 1.16302 0.79074 0.81591 0.83890 1.90837 1.62702 1.61022 1.38602 1.45303 1.60199 1.26126 1.06035 1.18412 0.89111 0.79806 0.96445 1.21574 1.37905 1.08301 0.91608 0.89876 1.26073 0.94556 0.95270 1.03696 1.70135 1.38027 1.12743 1.36045 0.85185 0.78812 0.77605 0.77451 1.18660 1.21031 1.18663 1.20630 0.99817 0.90943 1.09806 0.93275 0.89830 0.92030 0.89650 0.91544 0.92303 0.83744 0.83567 0.85817 0.91721 0.92197 0.75603 0.76069 0.99628 0.99632 0.92213 0.86172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.19 10.10 127.77 1.29 2.48 16 2 N -0.65 -9.99 3.41 -747.28 -2.55 -12.54 16 3 C 0.09 0.81 10.63 127.77 1.36 2.17 16 4 C 0.20 3.85 6.53 38.22 0.25 4.10 16 5 C -0.20 -3.19 9.31 22.40 0.21 -2.98 16 6 C -0.07 -1.20 10.04 22.25 0.22 -0.98 16 7 C -0.17 -3.44 9.70 22.29 0.22 -3.22 16 8 C -0.06 -1.41 5.24 -19.89 -0.10 -1.51 16 9 C 0.18 5.29 5.80 85.63 0.50 5.79 16 10 N -0.73 -23.16 5.55 -482.31 -2.68 -25.84 16 11 C 0.69 30.41 8.57 179.06 1.53 31.94 16 12 O -0.65 -34.94 16.34 -4.00 -0.07 -35.01 16 13 N -0.72 -32.57 5.55 -482.31 -2.68 -35.25 16 14 C 0.29 16.29 5.43 85.63 0.46 16.76 16 15 C -0.56 -30.96 9.28 25.60 0.24 -30.72 16 16 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 17 C 0.00 0.20 5.46 84.66 0.46 0.67 16 18 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 19 Si 0.99 42.84 29.54 68.60 2.03 44.87 16 20 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 22 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 23 C -0.19 -4.14 8.81 22.40 0.20 -3.94 16 24 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 25 H 0.08 0.79 8.07 -2.39 -0.02 0.77 16 26 H 0.06 0.93 6.46 -2.39 -0.02 0.91 16 27 H 0.09 0.66 5.32 -2.39 -0.01 0.64 16 28 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.15 1.63 5.75 -2.91 -0.02 1.61 16 31 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 32 H 0.12 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 34 H 0.06 1.84 8.08 -2.39 -0.02 1.82 16 35 H 0.41 10.61 8.48 -92.70 -0.79 9.83 16 36 H 0.40 15.11 8.34 -92.70 -0.77 14.33 16 37 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 38 H -0.01 -0.91 8.14 -2.38 -0.02 -0.93 16 39 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 40 H 0.12 2.63 6.31 -2.91 -0.02 2.61 16 Total: -1.00 -75.40 337.51 0.68 -74.72 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -0.50 Total: 25.29 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: 6.83 Total: 20.55 kcal Atomic # 7 Polarization: -122.79 SS G_CDS: -7.62 Total: -130.41 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -0.07 Total: -35.01 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -75.40 0.68 -74.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426415598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.083 kcal (2) G-P(sol) polarization free energy of solvation -75.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds