Wall clock time and date at job start Mon Mar 30 2020 01:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34951 * 126.03680 * 2 1 4 4 C 1.35313 * 107.74399 * 180.15556 * 3 2 1 5 5 C 1.50707 * 126.03856 * 179.87591 * 4 3 2 6 6 C 1.52994 * 109.47009 * 269.71116 * 5 4 3 7 7 C 1.50698 * 109.47153 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00330 * 359.97438 * 7 6 5 9 9 N 1.34782 * 120.00135 * 180.02562 * 7 6 5 10 10 C 1.46495 * 120.00258 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47269 * 184.79147 * 10 9 7 12 12 C 1.50694 * 115.55114 * 294.81128 * 11 10 9 13 13 H 1.08008 * 119.99906 * 95.20873 * 12 11 10 14 14 C 1.37875 * 120.00314 * 274.92789 * 12 11 10 15 15 N 1.31509 * 119.99913 * 355.42420 * 14 12 11 16 16 Si 1.86807 * 120.00040 * 175.41703 * 14 12 11 17 17 H 1.48494 * 109.47052 * 60.00642 * 16 14 12 18 18 H 1.48500 * 109.47055 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47106 * 300.00083 * 16 14 12 20 20 C 1.53003 * 117.49834 * 80.48431 * 11 10 9 21 21 C 1.53006 * 117.49908 * 149.14426 * 11 10 9 22 22 C 1.39872 * 107.92260 * 359.60574 * 4 3 2 23 23 N 1.30839 * 108.19746 * 0.24673 * 22 4 3 24 24 H 1.09010 * 109.46530 * 270.25797 * 1 2 3 25 25 H 1.09002 * 109.47451 * 30.25628 * 1 2 3 26 26 H 1.08995 * 109.47368 * 150.25835 * 1 2 3 27 27 H 1.07998 * 126.12723 * 359.97438 * 3 2 1 28 28 H 1.09003 * 109.47080 * 149.70953 * 5 4 3 29 29 H 1.09002 * 109.46869 * 29.71061 * 5 4 3 30 30 H 1.09005 * 109.47336 * 59.99445 * 6 5 4 31 31 H 1.09009 * 109.47164 * 300.00067 * 6 5 4 32 32 H 0.96999 * 119.99637 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.47395 * 64.78624 * 10 9 7 34 34 H 1.09007 * 109.47080 * 304.78945 * 10 9 7 35 35 H 0.97001 * 119.99960 * 184.99387 * 15 14 12 36 36 H 1.09003 * 117.50034 * 214.99852 * 20 11 10 37 37 H 1.09002 * 117.49971 * 0.02686 * 20 11 10 38 38 H 1.08996 * 117.49810 * 359.97342 * 21 11 10 39 39 H 1.08995 * 117.50078 * 144.97442 * 21 11 10 40 40 H 1.07999 * 125.89693 * 180.26236 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0035 5 6 4.7680 1.5453 -0.0074 6 6 5.1824 1.8361 -1.4512 7 6 6.4070 2.7143 -1.4551 8 8 6.8996 3.0728 -0.4065 9 7 6.9543 3.1023 -2.6241 10 6 8.1451 3.9555 -2.6280 11 6 8.4889 4.3449 -4.0671 12 6 8.9046 3.2092 -4.9661 13 1 8.1748 2.7272 -5.5999 14 6 10.2176 2.7891 -4.9839 15 7 11.1246 3.4362 -4.2852 16 14 10.7084 1.3005 -6.0002 17 1 10.3926 1.5510 -7.4294 18 1 12.1656 1.0572 -5.8501 19 1 9.9570 0.1096 -5.5286 20 6 7.6952 5.4909 -4.6976 21 6 9.1556 5.7037 -4.2913 22 6 3.5346 -0.7321 0.0034 23 7 2.2891 -1.1327 0.0055 24 1 -0.3633 0.0046 1.0278 25 1 -0.3634 0.8877 -0.5178 26 1 -0.3634 -0.8922 -0.5098 27 1 1.9281 2.1193 -0.0004 28 1 5.5821 1.0365 0.5088 29 1 4.5441 2.4825 0.5021 30 1 4.3682 2.3449 -1.9675 31 1 5.4062 0.8988 -1.9608 32 1 6.5601 2.8159 -3.4629 33 1 8.9822 3.4131 -2.1885 34 1 7.9492 4.8555 -2.0451 35 1 12.0593 3.1862 -4.3540 36 1 7.4737 5.4234 -5.7628 37 1 6.9284 5.9678 -4.0871 38 1 9.3489 6.3203 -3.4136 39 1 9.8951 5.7760 -5.0887 40 1 4.4054 -1.3710 0.0068 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431170124.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:06 Heat of formation + Delta-G solvation = 52.244066 kcal Electronic energy + Delta-G solvation = -20604.211940 eV Core-core repulsion = 17421.151822 eV Total energy + Delta-G solvation = -3183.060118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.30085 -39.03336 -36.69632 -34.31646 -33.21904 -32.60577 -31.95414 -29.60416 -27.35246 -26.13891 -25.19441 -23.32141 -21.21145 -21.15319 -20.19156 -19.63260 -19.14693 -17.05808 -16.54346 -15.91380 -15.59793 -15.24929 -14.86202 -14.64518 -14.53690 -13.94248 -13.49164 -13.46163 -13.07037 -12.88941 -12.77351 -12.52126 -12.12762 -11.82789 -11.68281 -11.53550 -11.01347 -10.96545 -10.93371 -10.54316 -10.51470 -10.23288 -9.59092 -9.54863 -9.25836 -9.03178 -8.48481 -8.44996 -8.22658 -8.05294 -6.06974 -4.17031 1.75188 2.37525 2.69553 3.27188 3.28434 3.33503 3.34731 3.97637 4.33800 4.35930 4.70115 4.83818 4.96972 5.09068 5.13979 5.21052 5.25274 5.33745 5.41977 5.58994 5.66946 5.83815 5.88814 6.06142 6.29399 6.33794 6.35365 6.49130 6.56838 6.58573 6.71029 6.86740 6.90558 7.12750 7.32715 7.41437 7.54323 7.56976 7.81330 8.33909 8.35973 8.83925 8.94482 9.50190 11.00179 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021993 B = 0.003379 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.849932 B = 8283.742976 C = 8854.334643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.382 5.382 3 C 0.053 3.947 4 C -0.229 4.229 5 C -0.023 4.023 6 C -0.134 4.134 7 C 0.501 3.499 8 O -0.561 6.561 9 N -0.706 5.706 10 C 0.163 3.837 11 C 0.025 3.975 12 C -0.501 4.501 13 H 0.059 0.941 14 C 0.074 3.926 15 N -0.875 5.875 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.211 4.211 21 C -0.143 4.143 22 C 0.054 3.946 23 N -0.302 5.302 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.173 0.827 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.400 0.600 33 H 0.066 0.934 34 H 0.039 0.961 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.126 -3.832 6.077 19.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.164 5.164 3 C -0.093 4.093 4 C -0.240 4.240 5 C -0.062 4.062 6 C -0.174 4.174 7 C 0.287 3.713 8 O -0.441 6.441 9 N -0.354 5.354 10 C 0.040 3.960 11 C 0.024 3.976 12 C -0.539 4.539 13 H 0.077 0.923 14 C -0.131 4.131 15 N -0.511 5.511 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.249 4.249 21 C -0.181 4.181 22 C -0.132 4.132 23 N -0.123 5.123 24 H 0.090 0.910 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.190 0.810 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.234 0.766 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -18.518 -4.609 6.916 20.297 hybrid contribution 0.733 -0.158 -1.080 1.315 sum -17.784 -4.766 5.836 19.315 Atomic orbital electron populations 1.21815 0.74465 1.04388 1.03167 1.48440 1.06510 1.03961 1.57507 1.22362 0.90938 0.93301 1.02654 1.20209 0.94608 0.94042 1.15160 1.19586 0.93279 0.98208 0.95175 1.21659 0.96320 1.00323 0.99105 1.20634 0.85442 0.81134 0.84091 1.90648 1.64171 1.57556 1.31694 1.46031 1.30305 1.51154 1.07927 1.20971 0.85747 0.91987 0.97334 1.19037 0.98304 0.88813 0.91418 1.20318 0.94266 1.15754 1.23563 0.92260 1.24987 0.96666 0.96468 0.94945 1.69978 1.01216 1.40203 1.39681 0.86689 0.77516 0.83483 0.80483 1.20304 1.21271 1.20095 1.23015 0.94527 1.07420 0.99893 1.22466 0.93270 1.00914 1.01467 1.23874 0.95103 0.94794 0.99458 1.77333 1.01829 1.08316 1.24867 0.90964 0.89546 0.89437 0.80996 0.90386 0.90818 0.89604 0.89176 0.76561 0.91562 0.94303 0.92802 0.90442 0.91766 0.91848 0.89551 0.79972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.59 11.47 59.85 0.69 1.28 16 2 N -0.38 -3.92 4.01 -68.16 -0.27 -4.19 16 3 C 0.05 0.52 11.40 -17.22 -0.20 0.33 16 4 C -0.23 -2.61 5.35 -105.05 -0.56 -3.17 16 5 C -0.02 -0.29 4.99 -27.88 -0.14 -0.43 16 6 C -0.13 -1.74 5.68 -27.89 -0.16 -1.89 16 7 C 0.50 8.97 7.83 -10.98 -0.09 8.88 16 8 O -0.56 -12.05 15.98 5.56 0.09 -11.96 16 9 N -0.71 -13.43 5.48 -60.30 -0.33 -13.76 16 10 C 0.16 3.67 5.50 -4.05 -0.02 3.65 16 11 C 0.03 0.58 1.47 -155.66 -0.23 0.36 16 12 C -0.50 -12.84 8.59 -34.44 -0.30 -13.14 16 13 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 14 C 0.07 1.95 5.43 -17.82 -0.10 1.85 16 15 N -0.87 -24.24 12.65 55.43 0.70 -23.54 16 16 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 20 C -0.21 -4.39 9.96 -26.69 -0.27 -4.65 16 21 C -0.14 -3.28 9.14 -26.69 -0.24 -3.53 16 22 C 0.05 0.64 11.96 -17.36 -0.21 0.43 16 23 N -0.30 -3.83 12.57 30.63 0.39 -3.45 16 24 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 25 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 28 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 29 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 32 H 0.40 6.97 8.33 -40.82 -0.34 6.63 16 33 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 34 H 0.04 0.87 8.09 -51.92 -0.42 0.45 16 35 H 0.26 7.00 8.32 -40.82 -0.34 6.67 16 36 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 39 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 40 H 0.18 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 346.64 15.07 5.22 5.22 Total: -1.00 -32.02 346.64 -7.27 -39.28 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.22 Total: 6.94 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -1.82 Total: -10.03 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.48 Total: -44.94 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.96 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.02 -7.27 -39.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431170124.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.525 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds