Wall clock time and date at job start Mon Mar 30 2020 01:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34951 * 126.03680 * 2 1 4 4 C 1.35313 * 107.74399 * 180.15556 * 3 2 1 5 5 C 1.50707 * 126.03856 * 179.87591 * 4 3 2 6 6 C 1.52994 * 109.47009 * 269.71116 * 5 4 3 7 7 C 1.50698 * 109.47153 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00330 * 359.97438 * 7 6 5 9 9 N 1.34782 * 120.00135 * 180.02562 * 7 6 5 10 10 C 1.46495 * 120.00258 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47269 * 184.79147 * 10 9 7 12 12 C 1.50694 * 115.55114 * 294.81128 * 11 10 9 13 13 H 1.08008 * 119.99906 * 95.20873 * 12 11 10 14 14 C 1.37875 * 120.00314 * 274.92789 * 12 11 10 15 15 N 1.31509 * 119.99913 * 355.42420 * 14 12 11 16 16 Si 1.86807 * 120.00040 * 175.41703 * 14 12 11 17 17 H 1.48494 * 109.47052 * 60.00642 * 16 14 12 18 18 H 1.48500 * 109.47055 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47106 * 300.00083 * 16 14 12 20 20 C 1.53003 * 117.49834 * 80.48431 * 11 10 9 21 21 C 1.53006 * 117.49908 * 149.14426 * 11 10 9 22 22 C 1.39872 * 107.92260 * 359.60574 * 4 3 2 23 23 N 1.30839 * 108.19746 * 0.24673 * 22 4 3 24 24 H 1.09010 * 109.46530 * 270.25797 * 1 2 3 25 25 H 1.09002 * 109.47451 * 30.25628 * 1 2 3 26 26 H 1.08995 * 109.47368 * 150.25835 * 1 2 3 27 27 H 1.07998 * 126.12723 * 359.97438 * 3 2 1 28 28 H 1.09003 * 109.47080 * 149.70953 * 5 4 3 29 29 H 1.09002 * 109.46869 * 29.71061 * 5 4 3 30 30 H 1.09005 * 109.47336 * 59.99445 * 6 5 4 31 31 H 1.09009 * 109.47164 * 300.00067 * 6 5 4 32 32 H 0.96999 * 119.99637 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.47395 * 64.78624 * 10 9 7 34 34 H 1.09007 * 109.47080 * 304.78945 * 10 9 7 35 35 H 0.97001 * 119.99960 * 184.99387 * 15 14 12 36 36 H 1.09003 * 117.50034 * 214.99852 * 20 11 10 37 37 H 1.09002 * 117.49971 * 0.02686 * 20 11 10 38 38 H 1.08996 * 117.49810 * 359.97342 * 21 11 10 39 39 H 1.08995 * 117.50078 * 144.97442 * 21 11 10 40 40 H 1.07999 * 125.89693 * 180.26236 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0035 5 6 4.7680 1.5453 -0.0074 6 6 5.1824 1.8361 -1.4512 7 6 6.4070 2.7143 -1.4551 8 8 6.8996 3.0728 -0.4065 9 7 6.9543 3.1023 -2.6241 10 6 8.1451 3.9555 -2.6280 11 6 8.4889 4.3449 -4.0671 12 6 8.9046 3.2092 -4.9661 13 1 8.1748 2.7272 -5.5999 14 6 10.2176 2.7891 -4.9839 15 7 11.1246 3.4362 -4.2852 16 14 10.7084 1.3005 -6.0002 17 1 10.3926 1.5510 -7.4294 18 1 12.1656 1.0572 -5.8501 19 1 9.9570 0.1096 -5.5286 20 6 7.6952 5.4909 -4.6976 21 6 9.1556 5.7037 -4.2913 22 6 3.5346 -0.7321 0.0034 23 7 2.2891 -1.1327 0.0055 24 1 -0.3633 0.0046 1.0278 25 1 -0.3634 0.8877 -0.5178 26 1 -0.3634 -0.8922 -0.5098 27 1 1.9281 2.1193 -0.0004 28 1 5.5821 1.0365 0.5088 29 1 4.5441 2.4825 0.5021 30 1 4.3682 2.3449 -1.9675 31 1 5.4062 0.8988 -1.9608 32 1 6.5601 2.8159 -3.4629 33 1 8.9822 3.4131 -2.1885 34 1 7.9492 4.8555 -2.0451 35 1 12.0593 3.1862 -4.3540 36 1 7.4737 5.4234 -5.7628 37 1 6.9284 5.9678 -4.0871 38 1 9.3489 6.3203 -3.4136 39 1 9.8951 5.7760 -5.0887 40 1 4.4054 -1.3710 0.0068 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431170124.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:05 Heat of formation + Delta-G solvation = 32.073506 kcal Electronic energy + Delta-G solvation = -20605.086601 eV Core-core repulsion = 17421.151822 eV Total energy + Delta-G solvation = -3183.934779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.08889 -40.54514 -38.45974 -35.21676 -34.85638 -33.93728 -33.42421 -30.53335 -28.47272 -27.61419 -26.81832 -24.43684 -22.91053 -21.96233 -21.33324 -21.11000 -20.67986 -18.34010 -17.89497 -17.28438 -16.70947 -16.56807 -16.42473 -16.18899 -15.55596 -15.32383 -14.84903 -14.60348 -14.31754 -13.86047 -13.73181 -13.60008 -13.49041 -13.27940 -12.94012 -12.90594 -12.78305 -12.74949 -12.37284 -12.00485 -11.97565 -11.40427 -11.39279 -10.92434 -10.81514 -10.41748 -10.32310 -10.00790 -9.76606 -9.24853 -8.07757 -6.22165 0.99196 1.44610 1.46690 1.52550 1.74941 1.83459 1.85044 2.42990 2.54886 3.20347 3.53266 3.70668 4.01186 4.05538 4.27066 4.29955 4.34597 4.43574 4.47916 4.57862 4.66776 4.70291 4.72866 4.75298 4.80279 4.87150 4.97736 5.02298 5.10393 5.30820 5.33601 5.40999 5.59145 5.65147 5.73191 5.76524 5.80615 6.20214 6.38647 6.77281 6.83775 6.89242 7.47263 7.49512 8.99053 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021993 B = 0.003379 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.849932 B = 8283.742976 C = 8854.334643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.383 5.383 3 C 0.064 3.936 4 C -0.247 4.247 5 C -0.013 4.013 6 C -0.119 4.119 7 C 0.499 3.501 8 O -0.600 6.600 9 N -0.703 5.703 10 C 0.179 3.821 11 C 0.004 3.996 12 C -0.506 4.506 13 H 0.065 0.935 14 C 0.024 3.976 15 N -0.909 5.909 16 Si 0.949 3.051 17 H -0.269 1.269 18 H -0.292 1.292 19 H -0.271 1.271 20 C -0.176 4.176 21 C -0.156 4.156 22 C 0.042 3.958 23 N -0.337 5.337 24 H 0.084 0.916 25 H 0.115 0.885 26 H 0.088 0.912 27 H 0.206 0.794 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.410 0.590 33 H 0.023 0.977 34 H 0.037 0.963 35 H 0.259 0.741 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.835 -3.952 5.340 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.165 5.165 3 C -0.083 4.083 4 C -0.259 4.259 5 C -0.052 4.052 6 C -0.159 4.159 7 C 0.288 3.712 8 O -0.482 6.482 9 N -0.353 5.353 10 C 0.054 3.946 11 C 0.003 3.997 12 C -0.544 4.544 13 H 0.083 0.917 14 C -0.177 4.177 15 N -0.546 5.546 16 Si 0.776 3.224 17 H -0.194 1.194 18 H -0.218 1.218 19 H -0.196 1.196 20 C -0.213 4.213 21 C -0.195 4.195 22 C -0.143 4.143 23 N -0.159 5.159 24 H 0.103 0.897 25 H 0.133 0.867 26 H 0.106 0.894 27 H 0.223 0.777 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.133 0.867 31 H 0.120 0.880 32 H 0.246 0.754 33 H 0.041 0.959 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -21.275 -4.754 6.156 22.652 hybrid contribution 1.497 -0.085 -0.813 1.705 sum -19.778 -4.839 5.343 21.051 Atomic orbital electron populations 1.22179 0.72100 1.05903 1.04490 1.48816 1.07921 1.03423 1.56327 1.22856 0.90376 0.94556 1.00493 1.20114 0.94868 0.93661 1.17229 1.19410 0.93323 0.98066 0.94433 1.21653 0.94365 0.99753 1.00126 1.21524 0.86192 0.80634 0.82874 1.90632 1.65567 1.58994 1.33008 1.45953 1.29320 1.50974 1.09018 1.20520 0.85805 0.91791 0.96475 1.19066 1.00103 0.88818 0.91693 1.20666 0.94277 1.16082 1.23325 0.91725 1.25711 0.96982 0.98804 0.96206 1.70109 1.01228 1.41876 1.41409 0.85750 0.76728 0.80547 0.79419 1.19435 1.21846 1.19589 1.22998 0.93429 1.04436 1.00465 1.22388 0.94574 1.01258 1.01245 1.24118 0.95380 0.95407 0.99409 1.77278 1.02413 1.09996 1.26262 0.89733 0.86660 0.89353 0.77740 0.92142 0.91100 0.86717 0.87985 0.75392 0.95882 0.94507 0.93244 0.89708 0.89286 0.91368 0.91814 0.79201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 11.47 127.77 1.47 2.27 16 2 N -0.38 -6.92 4.01 -369.56 -1.48 -8.41 16 3 C 0.06 1.08 11.40 83.54 0.95 2.03 16 4 C -0.25 -5.19 5.35 -20.14 -0.11 -5.30 16 5 C -0.01 -0.31 4.99 29.85 0.15 -0.16 16 6 C -0.12 -2.83 5.68 29.85 0.17 -2.66 16 7 C 0.50 17.40 7.83 87.66 0.69 18.09 16 8 O -0.60 -25.88 15.98 -3.02 -0.05 -25.93 16 9 N -0.70 -26.07 5.48 -463.07 -2.54 -28.60 16 10 C 0.18 8.11 5.50 86.38 0.48 8.59 16 11 C 0.00 0.18 1.47 -52.93 -0.08 0.10 16 12 C -0.51 -25.64 8.59 25.60 0.22 -25.42 16 13 H 0.06 3.14 7.82 -2.91 -0.02 3.11 16 14 C 0.02 1.25 5.43 84.65 0.46 1.71 16 15 N -0.91 -51.46 12.65 21.45 0.27 -51.19 16 16 Si 0.95 42.09 29.54 68.60 2.03 44.11 16 17 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 18 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 C -0.18 -6.95 9.96 30.62 0.30 -6.64 16 21 C -0.16 -7.17 9.14 30.62 0.28 -6.89 16 22 C 0.04 0.95 11.96 85.24 1.02 1.97 16 23 N -0.34 -8.15 12.57 -57.02 -0.72 -8.87 16 24 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 25 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.21 1.92 8.06 -2.91 -0.02 1.89 16 28 H 0.06 1.60 8.10 -2.39 -0.02 1.58 16 29 H 0.07 1.68 8.10 -2.39 -0.02 1.66 16 30 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 32 H 0.41 13.51 8.33 -92.71 -0.77 12.74 16 33 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.04 1.66 8.09 -2.38 -0.02 1.64 16 35 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 36 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 37 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 38 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 39 H 0.06 3.18 8.14 -2.39 -0.02 3.16 16 40 H 0.19 3.65 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -69.94 346.64 3.76 -66.18 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.26 Total: 25.02 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 6.00 Total: -12.31 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -4.47 Total: -97.07 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.05 Total: -25.93 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Total: -69.94 3.76 -66.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431170124.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.252 kcal (2) G-P(sol) polarization free energy of solvation -69.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds