Wall clock time and date at job start Mon Mar 30 2020 02:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47053 * 2 1 4 4 N 1.46503 * 109.47286 * 119.99764 * 2 1 3 5 5 N 1.40444 * 126.82491 * 299.97827 * 4 2 1 6 6 C 1.30709 * 106.78972 * 180.02562 * 5 4 2 7 7 N 1.33234 * 108.94865 * 0.24213 * 6 5 4 8 8 C 1.30833 * 109.82960 * 359.58808 * 7 6 5 9 9 C 1.50699 * 125.95995 * 180.12226 * 8 7 6 10 10 N 1.46900 * 109.47355 * 270.33365 * 9 8 7 11 11 C 1.46899 * 110.99778 * 190.00193 * 10 9 8 12 12 C 1.50701 * 109.46963 * 168.99237 * 11 10 9 13 13 H 1.08000 * 119.99882 * 354.96407 * 12 11 10 14 14 C 1.37874 * 120.00103 * 174.95703 * 12 11 10 15 15 N 1.31517 * 120.00096 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00082 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47276 * 90.00051 * 16 14 12 18 18 H 1.48506 * 109.47215 * 210.00001 * 16 14 12 19 19 H 1.48497 * 109.47197 * 330.00228 * 16 14 12 20 20 C 1.46896 * 110.99902 * 66.04953 * 10 9 8 21 21 C 1.52991 * 109.47428 * 62.03052 * 20 10 9 22 22 C 1.47202 * 109.47049 * 179.60335 * 21 20 10 23 23 N 7.86490 * 140.84117 * 146.97945 * 2 1 3 24 24 H 1.09001 * 109.47572 * 59.99994 * 1 2 3 25 25 H 1.09002 * 109.46915 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47292 * 300.00051 * 1 2 3 27 27 H 1.08998 * 109.47058 * 240.00136 * 2 1 3 28 28 H 1.08990 * 109.47374 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46936 * 300.00395 * 3 2 1 30 30 H 1.09006 * 109.47113 * 59.99839 * 3 2 1 31 31 H 1.08003 * 125.52419 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.47185 * 30.33333 * 9 8 7 33 33 H 1.09004 * 109.47116 * 150.32936 * 9 8 7 34 34 H 1.09002 * 109.47247 * 288.99186 * 11 10 9 35 35 H 1.09000 * 109.47219 * 48.99359 * 11 10 9 36 36 H 0.96999 * 120.00212 * 179.97438 * 15 14 12 37 37 H 1.09005 * 109.46928 * 182.03341 * 20 10 9 38 38 H 1.09009 * 109.47013 * 302.02579 * 20 10 9 39 39 H 1.08998 * 109.47615 * 299.60165 * 21 20 10 40 40 H 1.09001 * 109.46920 * 59.60698 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 7 1.7694 -0.3376 2.5326 6 6 2.3902 -1.2148 3.2767 7 7 3.0139 -2.0880 2.4870 8 6 2.7943 -1.7876 1.2327 9 6 3.3245 -2.5368 0.0375 10 7 4.6275 -1.9805 -0.3507 11 6 5.0658 -2.5200 -1.6448 12 6 6.2559 -1.7379 -2.1379 13 1 6.5974 -0.8718 -1.5905 14 6 6.9089 -2.1282 -3.2878 15 7 6.4929 -3.1827 -3.9546 16 14 8.3846 -1.1593 -3.8986 17 1 9.6246 -1.7172 -3.3018 18 1 8.4612 -1.2546 -5.3786 19 1 8.2410 0.2643 -3.5010 20 6 5.6352 -2.2247 0.6899 21 6 5.8266 -3.7318 0.8709 22 6 6.8432 -3.9763 1.9070 23 7 7.6284 -4.1643 2.7064 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.3998 -1.2269 4.3566 32 1 3.4404 -3.5905 0.2912 33 1 2.6253 -2.4379 -0.7929 34 1 5.3430 -3.5675 -1.5268 35 1 4.2531 -2.4383 -2.3665 36 1 6.9521 -3.4571 -4.7638 37 1 6.5811 -1.7714 0.3933 38 1 5.3007 -1.7854 1.6298 39 1 4.8825 -4.1842 1.1745 40 1 6.1543 -4.1721 -0.0708 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000434474295.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:28 Heat of formation + Delta-G solvation = 116.422961 kcal Electronic energy + Delta-G solvation = -21845.650348 eV Core-core repulsion = 18697.665987 eV Total energy + Delta-G solvation = -3147.984361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.93265 -37.87193 -36.03046 -35.84241 -32.86826 -31.64050 -30.82193 -30.13054 -27.69276 -27.33503 -25.56696 -23.79349 -23.17851 -21.07698 -20.45549 -19.38211 -17.41245 -17.02473 -16.30949 -15.83102 -15.03563 -14.79993 -14.63840 -14.33517 -14.21770 -13.93066 -13.71037 -13.21326 -13.09793 -12.67923 -12.43031 -12.30910 -12.15985 -12.00292 -11.79457 -11.57619 -11.48522 -11.25642 -11.19986 -10.98144 -10.83060 -10.69543 -10.23440 -10.03634 -9.74364 -9.49296 -9.46573 -9.28502 -8.56950 -7.59456 -6.16813 -4.18638 1.82605 2.46927 3.14674 3.18922 3.23274 3.25459 3.32981 3.36274 4.24102 4.36941 4.42075 4.48820 4.83665 4.87395 4.93502 5.07972 5.11615 5.20177 5.45235 5.49468 5.53648 5.60371 5.63863 5.71378 5.76694 5.82412 5.97894 6.07454 6.18351 6.26726 6.50670 6.60152 6.68906 6.96946 7.01912 7.11427 7.58980 7.75242 7.93141 8.01188 8.28212 8.34857 8.88962 9.47111 10.93342 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.013785 B = 0.006104 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.756219 B = 4585.682388 C = 5995.773979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.152 3.848 3 C -0.157 4.157 4 N -0.359 5.359 5 N -0.327 5.327 6 C 0.191 3.809 7 N -0.546 5.546 8 C 0.299 3.701 9 C 0.116 3.884 10 N -0.523 5.523 11 C 0.187 3.813 12 C -0.511 4.511 13 H 0.065 0.935 14 C 0.060 3.940 15 N -0.895 5.895 16 Si 0.894 3.106 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.072 3.928 21 C -0.069 4.069 22 C 0.229 3.771 23 N -0.463 5.463 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.210 0.790 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.010 0.990 35 H 0.032 0.968 36 H 0.263 0.737 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.809 3.791 5.675 13.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.050 3.950 3 C -0.214 4.214 4 N -0.150 5.150 5 N -0.155 5.155 6 C -0.112 4.112 7 N -0.275 5.275 8 C 0.022 3.978 9 C -0.014 4.014 10 N -0.247 5.247 11 C 0.063 3.937 12 C -0.549 4.549 13 H 0.083 0.917 14 C -0.142 4.142 15 N -0.534 5.534 16 Si 0.722 3.278 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.058 4.058 21 C -0.111 4.111 22 C -0.088 4.088 23 N -0.141 5.141 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.131 0.869 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.226 0.774 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.028 0.972 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.121 0.879 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.932 4.303 6.948 13.649 hybrid contribution 0.613 -0.355 -0.794 1.064 sum -10.319 3.948 6.155 12.647 Atomic orbital electron populations 1.22133 0.93543 1.02754 1.03286 1.21451 0.95002 0.94662 0.83915 1.22065 1.02748 0.93863 1.02766 1.50457 1.37797 1.21204 1.05559 1.77893 1.26220 1.24281 0.87126 1.25811 0.94469 0.90010 1.00927 1.70486 1.27049 1.30274 0.99702 1.24376 0.90849 0.87490 0.95046 1.20687 0.94245 0.95814 0.90668 1.62446 0.99424 1.58058 1.04743 1.19912 0.96380 0.94469 0.82931 1.21065 1.12365 1.12682 1.08824 0.91725 1.24927 0.97509 0.95130 0.96602 1.69925 1.40913 1.24977 1.17631 0.86548 0.82831 0.80506 0.77890 1.20667 1.21242 1.19772 1.22048 0.97770 0.90648 0.95307 1.20141 0.94091 1.02414 0.94453 1.29167 0.93674 0.92426 0.93552 1.81125 1.11427 1.09782 1.11799 0.90546 0.92242 0.91416 0.86898 0.91195 0.90729 0.91759 0.77373 0.91116 0.88902 0.97207 0.95005 0.92748 0.89039 0.91142 0.87900 0.86241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.47 37.16 0.35 -1.14 16 2 C 0.15 1.75 3.68 -67.93 -0.25 1.50 16 3 C -0.16 -1.75 9.47 37.16 0.35 -1.39 16 4 N -0.36 -5.03 3.28 -51.88 -0.17 -5.20 16 5 N -0.33 -4.77 12.60 29.29 0.37 -4.40 16 6 C 0.19 2.64 13.03 -91.82 -1.20 1.45 16 7 N -0.55 -8.37 10.38 -11.97 -0.12 -8.50 16 8 C 0.30 4.43 6.62 -155.70 -1.03 3.40 16 9 C 0.12 1.68 4.92 -4.98 -0.02 1.65 16 10 N -0.52 -9.06 4.69 -237.52 -1.11 -10.17 16 11 C 0.19 3.93 4.53 -4.98 -0.02 3.91 16 12 C -0.51 -12.47 8.40 -34.44 -0.29 -12.76 16 13 H 0.06 1.60 7.37 -52.49 -0.39 1.22 16 14 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -23.92 13.29 55.43 0.74 -23.18 16 16 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 C 0.07 1.23 4.94 -3.83 -0.02 1.21 16 21 C -0.07 -1.06 5.05 -29.52 -0.15 -1.21 16 22 C 0.23 3.91 15.43 -20.75 -0.32 3.59 16 23 N -0.46 -8.83 18.54 42.16 0.78 -8.05 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.11 1.28 6.74 -51.93 -0.35 0.93 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.21 2.13 8.06 -52.48 -0.42 1.70 16 32 H 0.07 0.95 6.07 -51.93 -0.32 0.64 16 33 H 0.09 1.21 6.91 -51.93 -0.36 0.85 16 34 H 0.01 0.22 6.01 -51.93 -0.31 -0.09 16 35 H 0.03 0.71 7.91 -51.93 -0.41 0.30 16 36 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 37 H 0.09 1.72 6.98 -51.93 -0.36 1.36 16 38 H 0.07 1.20 6.61 -51.92 -0.34 0.86 16 39 H 0.10 1.40 6.34 -51.93 -0.33 1.07 16 40 H 0.12 1.96 6.28 -51.93 -0.33 1.63 16 LS Contribution 337.07 15.07 5.08 5.08 Total: -1.00 -29.12 337.07 -7.75 -36.87 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.59 Total: 0.72 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -2.69 Total: 1.65 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: 0.48 Total: -59.50 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.12 -7.75 -36.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434474295.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.291 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds