Wall clock time and date at job start Mon Mar 30 2020 02:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47053 * 2 1 4 4 N 1.46503 * 109.47286 * 119.99764 * 2 1 3 5 5 N 1.40444 * 126.82491 * 299.97827 * 4 2 1 6 6 C 1.30709 * 106.78972 * 180.02562 * 5 4 2 7 7 N 1.33234 * 108.94865 * 0.24213 * 6 5 4 8 8 C 1.30833 * 109.82960 * 359.58808 * 7 6 5 9 9 C 1.50699 * 125.95995 * 180.12226 * 8 7 6 10 10 N 1.46900 * 109.47355 * 270.33365 * 9 8 7 11 11 C 1.46899 * 110.99778 * 190.00193 * 10 9 8 12 12 C 1.50701 * 109.46963 * 168.99237 * 11 10 9 13 13 H 1.08000 * 119.99882 * 354.96407 * 12 11 10 14 14 C 1.37874 * 120.00103 * 174.95703 * 12 11 10 15 15 N 1.31517 * 120.00096 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00082 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47276 * 90.00051 * 16 14 12 18 18 H 1.48506 * 109.47215 * 210.00001 * 16 14 12 19 19 H 1.48497 * 109.47197 * 330.00228 * 16 14 12 20 20 C 1.46896 * 110.99902 * 66.04953 * 10 9 8 21 21 C 1.52991 * 109.47428 * 62.03052 * 20 10 9 22 22 C 1.47202 * 109.47049 * 179.60335 * 21 20 10 23 23 N 7.86490 * 140.84117 * 146.97945 * 2 1 3 24 24 H 1.09001 * 109.47572 * 59.99994 * 1 2 3 25 25 H 1.09002 * 109.46915 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47292 * 300.00051 * 1 2 3 27 27 H 1.08998 * 109.47058 * 240.00136 * 2 1 3 28 28 H 1.08990 * 109.47374 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46936 * 300.00395 * 3 2 1 30 30 H 1.09006 * 109.47113 * 59.99839 * 3 2 1 31 31 H 1.08003 * 125.52419 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.47185 * 30.33333 * 9 8 7 33 33 H 1.09004 * 109.47116 * 150.32936 * 9 8 7 34 34 H 1.09002 * 109.47247 * 288.99186 * 11 10 9 35 35 H 1.09000 * 109.47219 * 48.99359 * 11 10 9 36 36 H 0.96999 * 120.00212 * 179.97438 * 15 14 12 37 37 H 1.09005 * 109.46928 * 182.03341 * 20 10 9 38 38 H 1.09009 * 109.47013 * 302.02579 * 20 10 9 39 39 H 1.08998 * 109.47615 * 299.60165 * 21 20 10 40 40 H 1.09001 * 109.46920 * 59.60698 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 7 1.7694 -0.3376 2.5326 6 6 2.3902 -1.2148 3.2767 7 7 3.0139 -2.0880 2.4870 8 6 2.7943 -1.7876 1.2327 9 6 3.3245 -2.5368 0.0375 10 7 4.6275 -1.9805 -0.3507 11 6 5.0658 -2.5200 -1.6448 12 6 6.2559 -1.7379 -2.1379 13 1 6.5974 -0.8718 -1.5905 14 6 6.9089 -2.1282 -3.2878 15 7 6.4929 -3.1827 -3.9546 16 14 8.3846 -1.1593 -3.8986 17 1 9.6246 -1.7172 -3.3018 18 1 8.4612 -1.2546 -5.3786 19 1 8.2410 0.2643 -3.5010 20 6 5.6352 -2.2247 0.6899 21 6 5.8266 -3.7318 0.8709 22 6 6.8432 -3.9763 1.9070 23 7 7.6284 -4.1643 2.7064 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.3998 -1.2269 4.3566 32 1 3.4404 -3.5905 0.2912 33 1 2.6253 -2.4379 -0.7929 34 1 5.3430 -3.5675 -1.5268 35 1 4.2531 -2.4383 -2.3665 36 1 6.9521 -3.4571 -4.7638 37 1 6.5811 -1.7714 0.3933 38 1 5.3007 -1.7854 1.6298 39 1 4.8825 -4.1842 1.1745 40 1 6.1543 -4.1721 -0.0708 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000434474295.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:27 Heat of formation + Delta-G solvation = 100.208078 kcal Electronic energy + Delta-G solvation = -21846.353478 eV Core-core repulsion = 18697.665987 eV Total energy + Delta-G solvation = -3148.687491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.01897 -39.28305 -37.33449 -36.92004 -34.71951 -32.86120 -31.90390 -31.48442 -29.23858 -28.15664 -26.96870 -25.35520 -24.27499 -22.35766 -21.66607 -20.52621 -18.84459 -18.28468 -17.88852 -17.13735 -16.52607 -16.12814 -15.86430 -15.47964 -15.42150 -15.17531 -15.06999 -14.53722 -14.13835 -14.05210 -13.62585 -13.54205 -13.44189 -13.10833 -13.03601 -12.97383 -12.88789 -12.61363 -12.53410 -12.38192 -12.33908 -11.96889 -11.83883 -11.52659 -11.26139 -10.85752 -10.58099 -10.51301 -10.40918 -9.03802 -8.11427 -6.16480 0.72136 1.45107 1.46517 1.49219 1.56454 1.78719 1.83883 2.04194 2.47195 3.01692 3.19735 3.24617 3.55057 3.57888 3.89247 4.00925 4.07101 4.19040 4.21097 4.27834 4.46298 4.61886 4.67143 4.71909 4.76980 4.84813 4.90553 4.96190 5.17516 5.24059 5.27176 5.37864 5.42857 5.48092 5.64040 5.75084 5.97571 6.12139 6.25396 6.57472 6.63282 6.98127 7.25372 7.51980 8.97887 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.013785 B = 0.006104 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.756219 B = 4585.682388 C = 5995.773979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.142 3.858 3 C -0.150 4.150 4 N -0.359 5.359 5 N -0.341 5.341 6 C 0.186 3.814 7 N -0.563 5.563 8 C 0.289 3.711 9 C 0.119 3.881 10 N -0.526 5.526 11 C 0.201 3.799 12 C -0.514 4.514 13 H 0.056 0.944 14 C 0.017 3.983 15 N -0.923 5.923 16 Si 0.944 3.056 17 H -0.283 1.283 18 H -0.286 1.286 19 H -0.271 1.271 20 C 0.081 3.919 21 C -0.056 4.056 22 C 0.246 3.754 23 N -0.496 5.496 24 H 0.100 0.900 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.115 0.885 28 H 0.044 0.956 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.239 0.761 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.004 0.996 35 H 0.023 0.977 36 H 0.262 0.738 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.128 0.872 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.870 4.139 5.811 14.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.041 3.959 3 C -0.208 4.208 4 N -0.150 5.150 5 N -0.169 5.169 6 C -0.117 4.117 7 N -0.292 5.292 8 C 0.012 3.988 9 C -0.011 4.011 10 N -0.249 5.249 11 C 0.076 3.924 12 C -0.552 4.552 13 H 0.074 0.926 14 C -0.182 4.182 15 N -0.564 5.564 16 Si 0.771 3.229 17 H -0.209 1.209 18 H -0.211 1.211 19 H -0.195 1.195 20 C -0.050 4.050 21 C -0.098 4.098 22 C -0.070 4.070 23 N -0.175 5.175 24 H 0.119 0.881 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.133 0.867 28 H 0.063 0.937 29 H 0.117 0.883 30 H 0.078 0.922 31 H 0.255 0.745 32 H 0.102 0.898 33 H 0.126 0.874 34 H 0.022 0.978 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.145 0.855 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.003 4.670 7.090 14.702 hybrid contribution 0.888 -0.410 -0.794 1.259 sum -11.116 4.261 6.297 13.467 Atomic orbital electron populations 1.22074 0.91668 1.02959 1.04053 1.21726 0.96503 0.94518 0.83144 1.22012 1.01030 0.93996 1.03716 1.50662 1.37391 1.20957 1.05988 1.77866 1.26771 1.24796 0.87482 1.26441 0.93708 0.89291 1.02212 1.70465 1.27602 1.31044 1.00074 1.24335 0.91401 0.88006 0.95030 1.20721 0.92733 0.96323 0.91302 1.62252 1.00679 1.58455 1.03549 1.19583 0.94842 0.93608 0.84342 1.21370 1.13103 1.12361 1.08397 0.92572 1.25517 0.99605 0.95940 0.97120 1.70000 1.42069 1.26235 1.18109 0.85769 0.80339 0.79489 0.77320 1.20886 1.21144 1.19526 1.21877 0.96668 0.91450 0.94976 1.20090 0.94670 1.01351 0.93657 1.29363 0.93161 0.91434 0.93067 1.81141 1.12472 1.10888 1.13000 0.88129 0.92296 0.92235 0.86694 0.93661 0.88338 0.92249 0.74516 0.89761 0.87406 0.97816 0.95935 0.92882 0.91319 0.91009 0.85463 0.86843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.47 71.98 0.68 -1.80 16 2 C 0.14 3.05 3.68 44.99 0.17 3.21 16 3 C -0.15 -3.15 9.47 71.98 0.68 -2.47 16 4 N -0.36 -9.54 3.28 -318.05 -1.04 -10.58 16 5 N -0.34 -9.45 12.60 -61.25 -0.77 -10.22 16 6 C 0.19 4.83 13.03 180.77 2.36 7.18 16 7 N -0.56 -16.28 10.38 -191.79 -1.99 -18.27 16 8 C 0.29 8.11 6.62 138.23 0.91 9.02 16 9 C 0.12 3.22 4.92 85.56 0.42 3.65 16 10 N -0.53 -17.69 4.69 -905.37 -4.24 -21.93 16 11 C 0.20 8.33 4.53 85.56 0.39 8.72 16 12 C -0.51 -24.93 8.40 25.60 0.21 -24.71 16 13 H 0.06 2.78 7.37 -2.91 -0.02 2.76 16 14 C 0.02 0.87 5.46 84.65 0.46 1.34 16 15 N -0.92 -49.17 13.29 21.45 0.28 -48.89 16 16 Si 0.94 41.26 29.54 68.60 2.03 43.29 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 18 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 20 C 0.08 2.66 4.94 86.30 0.43 3.09 16 21 C -0.06 -1.65 5.05 28.79 0.15 -1.51 16 22 C 0.25 8.18 15.43 89.44 1.38 9.56 16 23 N -0.50 -18.60 18.54 20.01 0.37 -18.23 16 24 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.12 2.41 6.74 -2.39 -0.02 2.39 16 28 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.24 4.32 8.06 -2.91 -0.02 4.29 16 32 H 0.08 2.07 6.07 -2.39 -0.01 2.06 16 33 H 0.11 2.59 6.91 -2.39 -0.02 2.57 16 34 H 0.00 0.18 6.01 -2.39 -0.01 0.16 16 35 H 0.02 0.98 7.91 -2.39 -0.02 0.97 16 36 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 37 H 0.07 2.59 6.98 -2.38 -0.02 2.57 16 38 H 0.07 2.38 6.61 -2.38 -0.02 2.37 16 39 H 0.13 3.16 6.34 -2.39 -0.02 3.15 16 40 H 0.11 3.60 6.28 -2.39 -0.01 3.58 16 Total: -1.00 -60.97 337.07 3.92 -57.05 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 1.05 Total: 12.50 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 8.24 Total: 15.28 kcal Atomic # 7 Polarization: -120.73 SS G_CDS: -7.39 Total: -128.12 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -60.97 3.92 -57.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434474295.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.258 kcal (2) G-P(sol) polarization free energy of solvation -60.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds