Wall clock time and date at job start Mon Mar 30 2020 01:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46510 * 119.99910 * 2 1 4 4 C 1.39068 * 120.00301 * 179.97438 * 2 1 3 5 5 C 1.39451 * 120.40197 * 359.97438 * 4 2 1 6 6 C 1.38224 * 118.43118 * 179.97438 * 5 4 2 7 7 C 1.39533 * 119.15777 * 359.97438 * 6 5 4 8 8 C 1.47845 * 119.63852 * 180.02562 * 7 6 5 9 9 O 1.21561 * 119.99669 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00239 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00207 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47509 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47395 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47149 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99760 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00202 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99598 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00213 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47306 * 59.99697 * 18 16 14 20 20 H 1.48492 * 109.46968 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46751 * 299.99599 * 18 16 14 22 22 N 1.32833 * 120.72633 * 0.02562 * 7 6 5 23 23 C 1.31323 * 121.71734 * 359.72400 * 22 7 6 24 24 H 1.09002 * 109.47391 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46813 * 240.00026 * 1 2 3 26 26 H 1.09004 * 109.47041 * 120.00153 * 1 2 3 27 27 H 1.08999 * 109.47096 * 89.99783 * 3 2 1 28 28 H 1.09001 * 109.46763 * 210.00177 * 3 2 1 29 29 H 1.09005 * 109.46576 * 330.00159 * 3 2 1 30 30 H 1.08002 * 120.78078 * 359.95664 * 5 4 2 31 31 H 1.08000 * 120.42378 * 179.97438 * 6 5 4 32 32 H 0.97001 * 119.99497 * 0.02562 * 10 8 7 33 33 H 1.09001 * 109.47072 * 300.00549 * 11 10 8 34 34 H 1.09002 * 109.46744 * 59.99933 * 11 10 8 35 35 H 1.09005 * 109.46878 * 300.00589 * 12 11 10 36 36 H 1.08999 * 109.47074 * 59.99385 * 12 11 10 37 37 H 1.09001 * 109.46996 * 299.99962 * 13 12 11 38 38 H 1.09007 * 109.46905 * 59.99888 * 13 12 11 39 39 H 0.97000 * 120.00367 * 180.02562 * 17 16 14 40 40 H 1.07996 * 119.61977 * 180.26876 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1604 -1.2043 0.0005 5 6 1.4717 -2.4169 0.0016 6 6 2.2036 -3.5894 0.0016 7 6 3.5973 -3.5209 -0.0001 8 6 4.3907 -4.7684 -0.0007 9 8 3.8284 -5.8462 0.0007 10 7 5.7371 -4.7108 -0.0028 11 6 6.5233 -5.9470 -0.0029 12 6 8.0142 -5.6033 -0.0049 13 6 8.8352 -6.8944 -0.0056 14 6 10.3036 -6.5559 -0.0081 15 1 10.6197 -5.5231 -0.0096 16 6 11.2437 -7.5645 -0.0097 17 7 10.8587 -8.8221 -0.0085 18 14 13.0639 -7.1449 -0.0122 19 1 13.3907 -6.3518 1.2000 20 1 13.8607 -8.3980 -0.0142 21 1 13.3872 -6.3513 -1.2250 22 7 4.2190 -2.3471 -0.0011 23 6 3.5551 -1.2141 -0.0060 24 1 -0.3634 1.0277 0.0005 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 -0.5139 -0.8900 27 1 2.3791 1.5835 1.0277 28 1 3.1499 1.1384 -0.5139 29 1 1.6083 2.0284 -0.5138 30 1 0.3919 -2.4393 0.0028 31 1 1.7032 -4.5465 0.0028 32 1 6.1857 -3.8507 -0.0036 33 1 6.2860 -6.5285 0.8880 34 1 6.2833 -6.5301 -0.8920 35 1 8.2517 -5.0215 -0.8955 36 1 8.2538 -5.0203 0.8844 37 1 8.5977 -7.4765 0.8849 38 1 8.5954 -7.4770 -0.8952 39 1 11.5200 -9.5317 -0.0092 40 1 4.0952 -0.2789 -0.0110 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444175483.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:44 Heat of formation + Delta-G solvation = -4.723112 kcal Electronic energy + Delta-G solvation = -20120.343617 eV Core-core repulsion = 16934.813217 eV Total energy + Delta-G solvation = -3185.530400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.74811 -39.01956 -37.05502 -35.30902 -33.27806 -32.51276 -31.36476 -30.52875 -28.90332 -27.01550 -25.68793 -23.57079 -23.23212 -21.99163 -20.58553 -20.11683 -18.09731 -17.29735 -16.90726 -16.24452 -15.74788 -15.41167 -15.21960 -14.96853 -14.55752 -14.37567 -14.11007 -13.98552 -13.51472 -13.20046 -13.18825 -12.89159 -12.55919 -12.22397 -12.19979 -11.75778 -11.62888 -10.83778 -10.72445 -10.64847 -10.57609 -10.14115 -9.82000 -9.77042 -9.67963 -9.28917 -9.05879 -8.64323 -8.31157 -7.82365 -5.96036 -3.98718 0.74242 1.08616 2.52832 2.90712 3.36491 3.40668 3.42623 3.50025 3.91237 4.18459 4.40493 4.45246 4.49588 4.52956 4.77529 4.80976 4.93401 5.03256 5.09804 5.15535 5.18779 5.39500 5.50394 5.63570 5.77597 5.88687 5.94745 6.16899 6.27337 6.58031 6.62231 6.70578 6.82315 6.95991 7.09574 7.62412 7.70367 7.84000 7.96521 8.03335 8.44365 8.52542 9.07796 9.64924 11.15292 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036027 B = 0.002568 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.014584 B =10901.499491 C =11642.159483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.625 5.625 3 C 0.087 3.913 4 C 0.182 3.818 5 C -0.168 4.168 6 C -0.058 4.058 7 C 0.017 3.983 8 C 0.569 3.431 9 O -0.547 6.547 10 N -0.707 5.707 11 C 0.115 3.885 12 C -0.121 4.121 13 C 0.024 3.976 14 C -0.521 4.521 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 N -0.415 5.415 23 C 0.028 3.972 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.138 0.862 31 H 0.147 0.853 32 H 0.408 0.592 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.562 21.457 -0.075 31.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.335 5.335 3 C -0.056 4.056 4 C 0.076 3.924 5 C -0.198 4.198 6 C -0.079 4.079 7 C -0.122 4.122 8 C 0.354 3.646 9 O -0.425 6.425 10 N -0.357 5.357 11 C -0.007 4.007 12 C -0.159 4.159 13 C -0.014 4.014 14 C -0.560 4.560 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 N -0.125 5.125 23 C -0.139 4.139 24 H 0.095 0.905 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.155 0.845 31 H 0.165 0.835 32 H 0.243 0.757 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.071 0.929 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -22.046 20.629 -0.073 30.192 hybrid contribution 0.261 0.678 0.007 0.727 sum -21.785 21.307 -0.065 30.472 Atomic orbital electron populations 1.21710 0.78967 1.02913 1.01637 1.46244 1.05411 1.03143 1.78712 1.21801 0.97528 0.84460 1.01790 1.19088 0.92959 0.86623 0.93727 1.21036 1.00437 0.90418 1.07934 1.21882 0.93515 0.99360 0.93166 1.20923 0.91816 0.91803 1.07699 1.17772 0.82546 0.87276 0.76964 1.90770 1.71260 1.29127 1.51344 1.46045 1.05615 1.11233 1.72811 1.21686 0.91818 0.85213 1.02020 1.21886 0.91141 1.01840 1.01011 1.19031 0.93750 0.90950 0.97639 1.21186 0.91274 0.92683 1.50810 0.92675 1.25033 0.99079 0.95055 0.95358 1.69958 1.33970 0.98797 1.50644 0.86637 0.85087 0.77559 0.78574 1.20260 1.21324 1.20266 1.67371 1.40411 0.97670 1.07098 1.22381 0.89029 0.96702 1.05746 0.90458 0.92371 0.92372 0.92727 0.90809 0.91040 0.84464 0.83488 0.75698 0.91664 0.91655 0.92666 0.92661 0.96261 0.96264 0.92924 0.82396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.36 9.42 59.85 0.56 0.92 16 2 N -0.63 -3.93 3.39 -187.38 -0.64 -4.57 16 3 C 0.09 0.35 10.17 59.85 0.61 0.96 16 4 C 0.18 1.65 6.57 -83.67 -0.55 1.10 16 5 C -0.17 -1.57 9.40 -39.13 -0.37 -1.94 16 6 C -0.06 -0.69 9.62 -39.10 -0.38 -1.07 16 7 C 0.02 0.25 6.74 -83.02 -0.56 -0.31 16 8 C 0.57 9.88 7.80 -12.33 -0.10 9.78 16 9 O -0.55 -10.99 16.31 5.31 0.09 -10.90 16 10 N -0.71 -12.01 5.54 -61.25 -0.34 -12.35 16 11 C 0.12 2.20 5.67 -4.05 -0.02 2.18 16 12 C -0.12 -2.52 5.27 -26.73 -0.14 -2.66 16 13 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 14 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 15 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -27.32 13.29 55.43 0.74 -26.59 16 18 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 N -0.42 -5.47 9.52 -9.63 -0.09 -5.57 16 23 C 0.03 0.29 10.38 -17.31 -0.18 0.11 16 24 H 0.08 0.16 7.79 -51.93 -0.40 -0.24 16 25 H 0.06 0.22 7.97 -51.93 -0.41 -0.19 16 26 H 0.06 0.22 7.98 -51.93 -0.41 -0.19 16 27 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 0.28 6.19 -51.93 -0.32 -0.04 16 29 H 0.07 0.17 7.92 -51.93 -0.41 -0.24 16 30 H 0.14 0.92 6.85 -52.49 -0.36 0.56 16 31 H 0.15 1.69 7.63 -52.49 -0.40 1.29 16 32 H 0.41 6.26 7.79 -40.82 -0.32 5.94 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.16 1.20 6.14 -52.49 -0.32 0.88 16 LS Contribution 338.79 15.07 5.11 5.11 Total: -1.00 -34.33 338.79 -7.70 -42.03 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -5.87 Total: 0.10 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -1.67 Total: -4.16 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.33 Total: -49.07 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.33 -7.70 -42.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444175483.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.302 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds